BAC Information

Click to search

BAC

Clone NameB6Ng01-198C02
Chromosome14 (Build37)
Map Location 55,986,298 - 56,149,303
singlet/doubletdoublet
Overlap geneLOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl
Upstream geneOxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176
Downstream genePck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198C02.bB6Ng01-198C02.g
ACCGA019808GA019809
length1,1101,112
definitionB6Ng01-198C02.b B6Ng01-198C02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,986,298 - 55,987,416)(56,148,197 - 56,149,303)
sequence
gaattctgtgagaggagagatacttccacccaggggaaagcagtgagatc
tctgctgatgtctcgtgagcaagcttccttgtgcttacttaacaactacc
aggaacagaggaagaatgtctggaggtctcaggtcagaggaaatcctggt
gttggtttgcttgctggtcccgtagtcacactgccttctggtgttagttt
cctttcctgtggcggtgatgaacacctggacaagagcaccttaggggagg
agggattcattttagctcccaggtccaggttaactgctgatctggaaatg
agcaaaatgcgagcagaatatttggtgttgtactctgaatggtccatcac
cagctttctatatgtgagtgcttgtccctcctcacctgcctaaaagatga
ttctctgagattatcatgttaaaaagcaagcttccctgaagaagatggtg
tagctcccccccccccctgtcaaaaggcaacccaaaggggtggatccagt
attgccctgctgctgattggttcagactggaatgtggctttctgtagaat
aaagactgcagaccaatagctgcacaggaagcagaagacaggacttcctg
ttagggaggcaatgactctgggaagaacaaaaagggaggcctttttacca
ggatacacaaaaggagacagacgtgacaaaaggcctgggaggtatagcaa
gccatctggcaggaactagatagttggattgacttaaatgagctagctga
gagtctgcccagctaaggcctaaactttgaaatagtaaaataaataaata
aatgaataaataaataaataaataaatagatttttaaaaaggccttggtg
tctttacttttagcatttagatcctacaacaaaatatcattccctctaaa
tatatttatgtgtctacctacaggtccatcattttcagccttgatcagat
aagctcctttttgctgtggacatcacagactcataactggtgaacgcgct
gagaataaatagctgtggatgcttagcgctaacgggacattttatattca
ctccaactgccagctccggagactacgaatagagggagagtacagatctc
agagattttg
gaattctgtagcttgcctccttgcttcagtttgggataactatacatgtc
tattgcagtacctcagcactcccacccccacccctgtaggtcacattgat
tgcacctgcaacataattcaacttttccctctctctagctttttctctcc
ccccccgaaagtctttcccaataaaccagttgtatccaagtggggacagg
cagaggtgggggctacatgtttatcttcagagcccctgacagtcaaacct
ggtgagcagggaggactagatggcccttgcaaagtgtctgtgcccaaaag
ctgcctctcccacaccactggactttggtgtagatactggttttcaatat
ttgcccacactctttggatatgtctacgttctagctctcagcccactctg
ctcccctgcacaaacaaaataactttgtcaccactgacaagcccgtagac
ctccttgttgctttttttctttgtaaagatttatagagtatactgttatt
ctccttagagagaccagaatggggcatcggatcccattgcagatggttgt
gagccaccatgtgcttgctgggtattgaactgaagacctctggaagagca
gttggcgctcttaacccctaagacacctctccagcccttctcattgcttt
taaggaaagcctaaatcttggaagtgccctccaggctctcccttgtccct
cccgacctgttgacctattgtcattttgctcacctttgaaaactttcttc
cctctggccacgttggccttcaggtttgtcattccgtcccccattctgcc
tgcttcagagccttacatctgtcattcctgcagcctgggatcctcaccct
ctttccatattcaggctcggtcatttgaccagtcttagtttaatgtgact
tctttaggtagcgagtccatttctctgaataagtagaataagatagaaga
ggccagtgattaggttattgatttattgattttattgatggattgagtta
cagcactcctgttactgagtgccaagctcagcttcgctagctgagcagaa
agggccttggagaaattggctgagcaatgggtcatttgcctgtgacgatc
caactcagtgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_55986298_55987416
seq2: B6Ng01-198C02.b_47_1156

seq1  GAATTCTGTGAGAGGAGAGATACTTCCACCCAGGGGAAAGCAGTGAGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGAGAGGAGAGATACTTCCACCCAGGGGAAAGCAGTGAGATC  50

seq1  TCTGCTGATGTCTCGTGAGCAAGCTTCCTTGTGCTTACTTAACAACTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGATGTCTCGTGAGCAAGCTTCCTTGTGCTTACTTAACAACTACC  100

seq1  AGGAACAGAGGAAGAATGTCTGGAGGTCTCAGGTCAGAGGAAATCCTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAGAGGAAGAATGTCTGGAGGTCTCAGGTCAGAGGAAATCCTGGT  150

seq1  GTTGGTTTGCTTGCTGGTCCCGTAGTCACACTGCCTTCTGGTGTTAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTTGCTTGCTGGTCCCGTAGTCACACTGCCTTCTGGTGTTAGTTT  200

seq1  CCTTTCCTGTGGCGGTGATGAACACCTGGACAAGAGCACCTTAGGGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTGTGGCGGTGATGAACACCTGGACAAGAGCACCTTAGGGGAGG  250

seq1  AGGGATTCATTTTAGCTCCCAGGTCCAGGTTAACTGCTGATCTGGAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTCATTTTAGCTCCCAGGTCCAGGTTAACTGCTGATCTGGAAATG  300

seq1  AGCAAAATGCGAGCAGAATATTTGGTGTTGTACTCTGAATGGTCCATCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATGCGAGCAGAATATTTGGTGTTGTACTCTGAATGGTCCATCAC  350

seq1  CAGCTTTCTATATGTGAGTGCTTGTCCCTCCTCACCTGCCTAAAAGATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTCTATATGTGAGTGCTTGTCCCTCCTCACCTGCCTAAAAGATGA  400

seq1  TTCTCTGAGATTATCATGTTAAAAAGCAAGCTTCCCTGAAGAAGATGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGAGATTATCATGTTAAAAAGCAAGCTTCCCTGAAGAAGATGGTG  450

seq1  TAGCTCCCCCCCCCCCCTGTCAAAAGGCAACCCAAAGGGGTGGATCCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCCCCCCCCCCCTGTCAAAAGGCAACCCAAAGGGGTGGATCCAGT  500

seq1  ATTGCCCTGCTGCTGATTGGTTCAGACTGGAATGTGGCTTTCTGTAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCCTGCTGCTGATTGGTTCAGACTGGAATGTGGCTTTCTGTAGAAT  550

seq1  AAAGACTGCAGACCAATAGCTGCACAGGAAGCAGAAGACAGGACTTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGCAGACCAATAGCTGCACAGGAAGCAGAAGACAGGACTTCCTG  600

seq1  TTAGGGAGGCAATGACTCTGGGAAGAACAAAAAGGGAGGCCTTTTTACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGAGGCAATGACTCTGGGAAGAACAAAAAGGGAGGCCTTTTTACCA  650

seq1  GGATACACAAAAGGAGACAGACGTGACAAAAGGCCTGGGAGGTATAGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACACAAAAGGAGACAGACGTGACAAAAGGCCTGGGAGGTATAGCAA  700

seq1  GCCATCTGGCAGGAACTAGATAGTTGGATTGACTTAAATGAGCTAGCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTGGCAGGAACTAGATAGTTGGATTGACTTAAATGAGCTAGCTGA  750

seq1  GAGTCTGCCCAGCTAAGGCCTAAACTTTGAAATAGTAAAATAAATAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGCCCAGCTAAGGCCTAAACTTTGAAATAGTAAAATAAATAAATA  800

seq1  AATGAATAAATAAATAAATAAATAAATAGATTTTTAAAAAGGCCTTGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATAAATAAATAAATAAATAAATAGATTTTTAAAAAGGCCTTGGTG  850

seq1  TCTTTACTTTTAGCA-TTAGATCCTACAACAAAATATCATT-CCTCTAAA  898
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  TCTTTACTTTTAGCATTTAGATCCTACAACAAAATATCATTCCCTCTAAA  900

seq1  TATATTTATGTGTCTACCTACAGGTCCATCATTTTCAGCCTTGATCAGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTATGTGTCTACCTACAGGTCCATCATTTTCAGCCTTGATCAGAT  950

seq1  AAGCTCCTTTTTGCTGTGGACATCACAGACTCATAACTGGTGAACGCGCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCTTTTTGCTGTGGACATCACAGACTCATAACTGGTGAACGCGCT  1000

seq1  GAGAATAAATAGCTGTGGATGCTTAGCGCTAAACGGGACA-TTTATATCA  1047
      |||||||||||||||||||||||||||||| ||||||||| |||||||  
seq2  GAGAATAAATAGCTGTGGATGCTTAGCGCT-AACGGGACATTTTATATTC  1049

seq1  ACCTCCAAACCTTGCCAAGGCTCCGGGGAGGACACGGAATAGAGGGAAGA  1097
      | ||||||    |||||  ||||||| ||  ||   |||||||||||   
seq2  A-CTCCAA---CTGCCA--GCTCCGGAGACTAC---GAATAGAGGGA--G  1088

seq1  AGTACAAGACCCAGAGATTTTG  1119
      ||||||   | |||||||||||
seq2  AGTACAGATCTCAGAGATTTTG  1110

seq1: chr14_56148197_56149303
seq2: B6Ng01-198C02.g_65_1176 (reverse)

seq1  GGCACTGAG-TGGATCGTCACAGGC-AATGGCCCATTGCTTCAG-CAATT  47
      ||||||||| ||||||||||||||| |||| |||||||| |||| |||||
seq2  GGCACTGAGTTGGATCGTCACAGGCAAATGACCCATTGC-TCAGCCAATT  49

seq1  TCTCC-AGGCCC-TTCTGCTCCAGCTAGCGAAGCTGAGCTTGGCACTCAG  95
      ||||| |||||| ||||||| |||||||||||||||||||||||||||||
seq2  TCTCCAAGGCCCTTTCTGCT-CAGCTAGCGAAGCTGAGCTTGGCACTCAG  98

seq1  TACAAGGAGTGCTGTAACTCAATCAATCAAT-AAATCAATAAATCAAT-A  143
      ||  |||||||||||||||||||| |||||| |||||||||||||||| |
seq2  TAACAGGAGTGCTGTAACTCAATCCATCAATAAAATCAATAAATCAATAA  148

seq1  CCTAATCACTGGCCTCTTCTATCTTATTCTACTTATTCAGAGGAATGGAC  193
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCTAATCACTGGCCTCTTCTATCTTATTCTACTTATTCAGAGAAATGGAC  198

seq1  TCGCTACCTAAAGAAGTCACATTAAACTAAGACTGGTCAAATGACCGAGC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTACCTAAAGAAGTCACATTAAACTAAGACTGGTCAAATGACCGAGC  248

seq1  CTGAATATGGGAAGAGGGTGAGGATCCCAGGCTGCAGGAATGACAGATGT  293
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTGAATATGGAAAGAGGGTGAGGATCCCAGGCTGCAGGAATGACAGATGT  298

seq1  AAGGCTCTGAAGCAGGCAGAATGGGGGACGGAATGACAAACCTGAAGGCC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCTGAAGCAGGCAGAATGGGGGACGGAATGACAAACCTGAAGGCC  348

seq1  AACGTGGCCAGAGGGAAGAAAGTTTTCAAAGGTGAGCAAAATGACAATAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGGCCAGAGGGAAGAAAGTTTTCAAAGGTGAGCAAAATGACAATAG  398

seq1  GTCAACAGGTCGGGAGGGACAAGGGAGAGCCTGGAGGGCACTTCCAAGAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACAGGTCGGGAGGGACAAGGGAGAGCCTGGAGGGCACTTCCAAGAT  448

seq1  TTAGGCTTTCCTTAAAAGCAATGAGAAGGGCTGGAGAGGTGTCTTAGGGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCTTTCCTTAAAAGCAATGAGAAGGGCTGGAGAGGTGTCTTAGGGG  498

seq1  TTAAGAGCGCCAACTGCTCTTCCAGAGGTCTTCAGTTCAATACCCAGCAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGCGCCAACTGCTCTTCCAGAGGTCTTCAGTTCAATACCCAGCAA  548

seq1  GCACATGGTGGCTCACAACCATCTGCAATGGGATCCGATGCCCCATTCTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGGTGGCTCACAACCATCTGCAATGGGATCCGATGCCCCATTCTG  598

seq1  GTCTCTCTAAGGAGAATAACAGTATACTCTATAAATCTTTACAAAGAAAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCTAAGGAGAATAACAGTATACTCTATAAATCTTTACAAAGAAAA  648

seq1  AAAGCAACAAGGAGGTCTACGGGCTTGTCAGTGGTGACAAAGTTATTTTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAACAAGGAGGTCTACGGGCTTGTCAGTGGTGACAAAGTTATTTTG  698

seq1  TTTGTGCAGGGGAGCAGAGTGGGCTGAGAGCTAGAACGTAGACATATCCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCAGGGGAGCAGAGTGGGCTGAGAGCTAGAACGTAGACATATCCA  748

seq1  AAGAGTGTGGGCAAATATTGAAAACCAGTATCTACACCAAAGTCCAGTGG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGTGGGCAAATATTGAAAACCAGTATCTACACCAAAGTCCAGTGG  798

seq1  TGTGGGAGAGGCAGCTTTTGGGCACAGACACTTTGCAAGGGCCATCTAGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAGAGGCAGCTTTTGGGCACAGACACTTTGCAAGGGCCATCTAGT  848

seq1  CCTCCCTGCTCACCAGGTTTGACTGTCAGGGGCTCTGAAGATAAACATGT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTGCTCACCAGGTTTGACTGTCAGGGGCTCTGAAGATAAACATGT  898

seq1  AGCCCCCACCTCTGCCTGTCCCCACTTGGATACAACTGGTTTATTGGGAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCACCTCTGCCTGTCCCCACTTGGATACAACTGGTTTATTGGGAA  948

seq1  AGACTTTCGGGGGGGGAGAGAAAAAGCTAGAGAGAGGGAAAAGTTGAATT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTCGGGGGGGGAGAGAAAAAGCTAGAGAGAGGGAAAAGTTGAATT  998

seq1  ATGTTGCAGGTGCAATCAATGTGACCTACAGGGGTGGGGGTGGGAGTGCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCAGGTGCAATCAATGTGACCTACAGGGGTGGGGGTGGGAGTGCT  1048

seq1  GAGGTACTGCAATAGACATGTATAGTTATCCCAAACTGAAGCAAGGAGGC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTACTGCAATAGACATGTATAGTTATCCCAAACTGAAGCAAGGAGGC  1098

seq1  AAGCTACAGAATTC  1107
      ||||||||||||||
seq2  AAGCTACAGAATTC  1112