BAC Information

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BAC

Clone NameB6Ng01-198M10
Chromosome14 (Build37)
Map Location 51,704,580 - 51,868,092
singlet/doubletdoublet
Overlap geneRnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14
Upstream geneOlfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441
Downstream geneEar11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198M10.bB6Ng01-198M10.g
ACCGA020288GA020289
length4571,152
definitionB6Ng01-198M10.b B6Ng01-198M10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,704,580 - 51,705,042)(51,866,957 - 51,868,092)
sequence
cacaaatatatgagacagacacatcaacaacaacaataaataataaaaga
caaatctagttggcggtggcaaaatggcttagtgcagcaagccatctttt
tatctccagaactcacatggtgaaagggcctctgactccgtgttccagct
gtggctgtagcattcgatgtgtccccccacaccccttagtagataaatgt
tttagaaataaaaaattgtaaagccaggtgtaatgggggtggggaaggga
gaggcaaaggcaggaagatttctgttgagttcccagacagccagaactac
ataaagacccacctaaaaagcacttagctcagcactccattgcctgagtg
actcaactatttcagcactctatcgccttcatttccagggcaatcaggtt
tttctttttgtcttccacctgcactaggcatgcaggtggtgtattaacct
acatgta
gaattcagtattttctacaagagtctgcatcgttgacttcccctttgatt
tctagtattccttcttatggagggcagtgaggctggagagatggctcaga
ggttaggagcactggctgctcttccagaggatttgagctccactcccacc
actcacatgacagctcacaattatcattacttcaattccacggcacttat
tgccttgttctggccactgatggcattgcacacacatggttcagagatat
acttgagggcacacctatacacataaaatgatatcttaaatagaatagat
ttgggctgacattactagcataagctgtgtgtgaaagcagtggtggtctc
acttgtaagctgagagattccatcctgaaccatccaggggtatgcccttc
ccccaaccttgagtaggctatacaaaccccaggtggttttacaccctagc
tggagttgaatttgcaatttcctacaggagttgaccaccagctgatcttg
ctttgaaactcaatccaactgaaacaaaggatgggtctgtgggctttccc
tatataaactcagtgctgaatattaaaccttgagccttgatcggacactt
tgtgttggcttcatctttctctcacactgtcctttttcatttccagcccc
atttcaggttacccagtaatccatggctgctggacaactacaggtggtgc
ctgaatcagagcactgaaaacagggggcagggatcaactgagaaatactg
actaggtggggctctgcagaaaacagaagaagtaacagtatcctgcactg
tgataagcaacttacagcattagtgttagtgctagcaataaattttattt
tttttggagactgtttttacaggaagtgtgatccttcttacaagggagga
aacaaatacccatggaaaggagttacagaaactaatttcagagcagagac
tgaaggaatgaccattccagaaactgccccaccttggggattcacacaat
aaaaaaccaccaaaccctagacactattgtggatgccaaccagaagcttg
ctgaacagggagcctgatattactgtctcctgagaggttctaccagttac
tggactaattaccagaaggtgaatactcacaaggtcatcattagattgga
gc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_51704580_51705042
seq2: B6Ng01-198M10.b_47_509

seq1  GAATTCCACAAATATATGAGACAGACACATCAACAACAACAATAAATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAAATATATGAGACAGACACATCAACAACAACAATAAATAAT  50

seq1  AAAAGACAAATCTAGTTGGCGGTGGCAAAATGGCTTAGTGCAGCAAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACAAATCTAGTTGGCGGTGGCAAAATGGCTTAGTGCAGCAAGCCA  100

seq1  TCTTTTTATCTCCAGAACTCACATGGTGAAAGGGCCTCTGACTCCGTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTATCTCCAGAACTCACATGGTGAAAGGGCCTCTGACTCCGTGTT  150

seq1  CCAGCTGTGGCTGTAGCATTCGATGTGTCCCCCCACACCCCTTAGTAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGTGGCTGTAGCATTCGATGTGTCCCCCCACACCCCTTAGTAGAT  200

seq1  AAATGTTTTAGAAATAAAAAATTGTAAAGCCAGGTGTAATGGGGGTGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTTAGAAATAAAAAATTGTAAAGCCAGGTGTAATGGGGGTGGGG  250

seq1  AAGGGAGAGGCAAAGGCAGGAAGATTTCTGTTGAGTTCCAAGACAGCCAG  300
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAGGGAGAGGCAAAGGCAGGAAGATTTCTGTTGAGTTCCCAGACAGCCAG  300

seq1  AACTACATAAAGACCCACCTAAAAAGCACTTAGCTCAGCACTCCATTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACATAAAGACCCACCTAAAAAGCACTTAGCTCAGCACTCCATTGCC  350

seq1  TGAGTGACTCAACTAGTTCAGCACTCTATCGCCTTCATTTCCAGGGCAAT  400
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGAGTGACTCAACTATTTCAGCACTCTATCGCCTTCATTTCCAGGGCAAT  400

seq1  CAGGTTTCCCCTTCTGTCTTCCACCTGCACTAGGCATGCAGGTGGTGCAC  450
      |||||||  | || ||||||||||||||||||||||||||||||||| | 
seq2  CAGGTTTTTCTTTTTGTCTTCCACCTGCACTAGGCATGCAGGTGGTGTAT  450

seq1  AAACCTACATGTA  463
       ||||||||||||
seq2  TAACCTACATGTA  463

seq1: chr14_51866957_51868092
seq2: B6Ng01-198M10.g_63_1214 (reverse)

seq1  GCTCC-ATCTAATGGATGAC--TGTGAGTA-TCA-CTTCTG--TATTAGT  43
      ||||| ||||||| ||||||  |||||||| ||| ||||||   ||||||
seq2  GCTCCAATCTAAT-GATGACCTTGTGAGTATTCACCTTCTGGTAATTAGT  49

seq1  -CAGGTACTGGTAGAACCTCTCAGGAGACAGTTATATCAGGCT-CCTG-T  90
       |||  |||||||||||||||||||||||||| |||||||||| |||| |
seq2  CCAGTAACTGGTAGAACCTCTCAGGAGACAGTAATATCAGGCTCCCTGTT  99

seq1  CAGCAAGC-TCTTGTTGGCATCCACAATAGTGTCT-GGGTTTGGTGGTTT  138
      |||||||| ||| |||||||||||||||||||||| ||||||||||||||
seq2  CAGCAAGCTTCTGGTTGGCATCCACAATAGTGTCTAGGGTTTGGTGGTTT  149

seq1  TTTATGGTGTGAATCCCC-AGGTGGGGCAGTTTCTGG-ATGGTCATTCCT  186
      ||||| |||||||||||| |||||||||||||||||| ||||||||||||
seq2  TTTATTGTGTGAATCCCCAAGGTGGGGCAGTTTCTGGAATGGTCATTCCT  199

seq1  TCAGTCTCTGCTCTGAATTTTGTTTCTGTAACTCC-TTCCATGGGTATTT  235
      ||||||||||||||||| || |||||||||||||| ||||||||||||||
seq2  TCAGTCTCTGCTCTGAAATTAGTTTCTGTAACTCCTTTCCATGGGTATTT  249

seq1  TGTTCCT-CCTTGTAAGAAGGATCACACTTCCTGTAAAAACAGTCTCC-A  283
        ||||| |||||||||||||||||||||||||||||||||||||||| |
seq2  GTTTCCTCCCTTGTAAGAAGGATCACACTTCCTGTAAAAACAGTCTCCAA  299

seq1  AAAAAATAAAATTTATTGCTAGCACTAACACTAATGCTGTAAGTTGCTTA  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAAATTTATTGCTAGCACTAACACTAATGCTGTAAGTTGCTTA  349

seq1  TCACAGTGCAGGATACTGTTACTTCTTCTGTTTTCTGCAGAGCCCCACCT  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTGCAGGATACTGTTACTTCTTCTGTTTTCTGCAGAGCCCCACCT  399

seq1  AGTCAGTATTTCTCAGTTGATCCCTGCCCCCTGTTTTCAGTGCTCTGATT  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTATTTCTCAGTTGATCCCTGCCCCCTGTTTTCAGTGCTCTGATT  449

seq1  CAGGCACCACCTGTAGTTGTCCAGCAGCCATGGATTACTGGGTAACCTGA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACCACCTGTAGTTGTCCAGCAGCCATGGATTACTGGGTAACCTGA  499

seq1  AATGGGGCTGGAAATGAAAAAGGACAGTGTGAGAGAAAGATGAAGCCAAC  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGCTGGAAATGAAAAAGGACAGTGTGAGAGAAAGATGAAGCCAAC  549

seq1  ACAAAGTGTCCGATCAAGGCTCAAGGTTTAATATTCAGCACTGAGTTTAT  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTGTCCGATCAAGGCTCAAGGTTTAATATTCAGCACTGAGTTTAT  599

seq1  ATAGGGAAAGCCCACAGACCCATCCTTTGTTTCAGTTGGATTGAGTTTCA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGAAAGCCCACAGACCCATCCTTTGTTTCAGTTGGATTGAGTTTCA  649

seq1  AAGCAAGATCAGCTGGTGGTCAACTCCTGTAGGAAATTGCAAATTCAACT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGATCAGCTGGTGGTCAACTCCTGTAGGAAATTGCAAATTCAACT  699

seq1  CCAGCTAGGGTGTAAAACCACCTGGGGTTTGTATAGCCTACTCAAGGTTG  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTAGGGTGTAAAACCACCTGGGGTTTGTATAGCCTACTCAAGGTTG  749

seq1  GGGGAAGGGCATACCCCTGGATGGTTCAGGATGGAATCTCTCAGCTTACA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGGGCATACCCCTGGATGGTTCAGGATGGAATCTCTCAGCTTACA  799

seq1  AGTGAGACCACCACTGCTTTCACACACAGCTTATGCTAGTAATGTCAGCC  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGACCACCACTGCTTTCACACACAGCTTATGCTAGTAATGTCAGCC  849

seq1  CAAATCTATTCTATTTAAGATATCATTTTATGTGTATAGGTGTGCCCTCA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTATTCTATTTAAGATATCATTTTATGTGTATAGGTGTGCCCTCA  899

seq1  AGTATATCTCTGAACCATGTGTGTGCAATGCCATCAGTGGCCAGAACAAG  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATCTCTGAACCATGTGTGTGCAATGCCATCAGTGGCCAGAACAAG  949

seq1  GCAATAAGTGCCGTGGAATTGAAGTAATGATAATTGTGAGCTGTCATGTG  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAAGTGCCGTGGAATTGAAGTAATGATAATTGTGAGCTGTCATGTG  999

seq1  AGTGGTGGGAGTGGAGCTCAAATCCTCTGGAAGAGCAGCCAGTGCTCCTA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGGGAGTGGAGCTCAAATCCTCTGGAAGAGCAGCCAGTGCTCCTA  1049

seq1  ACCTCTGAGCCATCTCTCCAGCCTCACTGCCCTCCATAAGAAGGAATACT  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGAGCCATCTCTCCAGCCTCACTGCCCTCCATAAGAAGGAATACT  1099

seq1  AGAAATCAAAGGGGAAGTCAACGATGCAGACTCTTGTAGAAAATACTGAA  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCAAAGGGGAAGTCAACGATGCAGACTCTTGTAGAAAATACTGAA  1149

seq1  TTC  1136
      |||
seq2  TTC  1152