BAC Information

Click to search

BAC

Clone NameB6Ng01-199I07
Chromosome14 (Build37)
Map Location 93,036,146 - 93,037,260
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665377, LOC638252
Downstream genePcdh9, LOC668566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199I07.bB6Ng01-199I07.g
ACCGA020831GA020832
length1,146931
definitionB6Ng01-199I07.b B6Ng01-199I07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaataaatatatctgctttccctttccatctacctatttcaaaga
caagcaaggatttactgtaagtgctcttaatcaaacatattagaattccc
acaaattacttttaataaaagaaacagatctagttacaaaaaaagtgcag
acggtatgaaattatagtttagtgggttaacagcatgcatctttcttgca
gaggatttaagttcaattcttaatacccaggtttggcagtttacattaga
ggggacttgatgtctctggtctccatgtacacttgcaatatattcacata
catacttagtcccctccatacacataactaggataaatattattttaatg
gatttttgtttttaggttattgacagttcctataaaaattacttatttat
tttctcatctacaaaaatataatagtaacaacagattttttacttttata
tggaaaaattaaacagaaattattaaacaaatacaaagtaagatagcaat
tctatagtaaatataaaactttgctaccaatggtcagttgacaataactt
cttgctaagatcttctcattttctttgtgacactgtaacgagttgtaaag
ggaaatgtcttgaaatattgtaaactattattgaagcatggttttctttt
gctaaatttacccttctctgatattagtgatttccctgaatccactcttg
tccagtatgcttggccatatgggatcaccttggtgcaagaacttccacat
agactgacatagatatactatgtcagtgtccacaggacaggaaggctttg
tgaaccagattcaaaatgtaaatcatagatattatcaaaaaataaattaa
agcaacatgagaaagcaaaaggtggttgagataaatttagcatcatttaa
aatcgtgtacaagagagatgtaagttaccaaagtcaccttcaattccgga
gcaccactatactccttcatgtttctatttcctttcctctgcccacgtca
gtctttcacacctcatgacatttcatattaaaaacaaagctattgaacta
gttgaacctaatacgcataaagcctggcatttggaattagcttatctgat
gttattgttaaagaatccagaataggaatacacctctggataaagc

gaattctttgatccacttagacttgagctttgtacaaggagataagaatg
gataaattctcattcttctatatgataaccgccagttgtgccagcaccat
ttgttgaaaatgctgtcttttttccactggatggttttatctcccttgtc
aaagatcaagtgaccataggtgtgtgggttcatttctgggtcttcaattt
tattccattgatctacctgtctgtcgctgtaccagtaccatgcagttttt
atcacagttgctctgtagtactacttgaggtcatacataatgatacatac
ataatgattcccccagagtttattttattgttgagaatagtttttactat
cctaagttttttgttattcaagatgaatttttaaattgccctttctaact
cagtgaagaattgagttagaatttggatggggattgtattgaatctgtag
atagctttcagcaggatagacattttgattatattcattctgccaatcca
tgagcatgggagatctttccatcttctgagatcttcaatttctttcttca
gagacttgaagttcttgtcatacagatctttcacttccttagttatagtc
acacaaagttattttatattatttgtgactattgtgaagggtgttgtttt
ccctaatttctttctcatcctgtttgtcctttgtgtagagaaaggacact
gatgtgtttgaattaattttatatccagctactgtgctgaagctgttcat
caggtttaggagttctctggtggaatttttagggtcactttatatatact
atcatatcatctgcaaatagtgatattttggacttctttcctttccaatt
tgtatccccttgatctccttttgttgtcaaatttgcttctggctaggact
tccagtactatgttgaataggtagggagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_93036146_93037260
seq2: B6Ng01-199I07.b_47_1192

seq1  GAATTCAATAAATATATCTGCTTTCCCTTTCCATCTACCTATTTCAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAAATATATCTGCTTTCCCTTTCCATCTACCTATTTCAAAGA  50

seq1  CAAGCAAGGATTTACTGTAAGTGCTCTTAATCAAACATATTAGAATTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAGGATTTACTGTAAGTGCTCTTAATCAAACATATTAGAATTCCC  100

seq1  ACAAATTACTTTTAATAAAAGAAACAGATCTAGTTACAAAAAAAGTGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTACTTTTAATAAAAGAAACAGATCTAGTTACAAAAAAAGTGCAG  150

seq1  ACGGTATGAAATTATAGTTTAGTGGGTTAACAGCATGCATCTTTCTTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTATGAAATTATAGTTTAGTGGGTTAACAGCATGCATCTTTCTTGCA  200

seq1  GAGGATTTAAGTTCAATTCTTAATACCCAGGTTTGGCAGTTTACATTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTTAAGTTCAATTCTTAATACCCAGGTTTGGCAGTTTACATTAGA  250

seq1  GGGGACTTGATGTCTCTGGTCTCCATGTACACTTGCAATATATTCACATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTTGATGTCTCTGGTCTCCATGTACACTTGCAATATATTCACATA  300

seq1  CATACTTAGTCCCCTCCATACACATAACTAGGATAAATATTATTTTAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTAGTCCCCTCCATACACATAACTAGGATAAATATTATTTTAATG  350

seq1  GATTTTTGTTTTTAGGTTATTGACAGTTCCTATAAAAATTACTTATTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTGTTTTTAGGTTATTGACAGTTCCTATAAAAATTACTTATTTAT  400

seq1  TTTCTCATCTACAAAAATATAATAGTAACAACAGATTTTTTACTTTTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATCTACAAAAATATAATAGTAACAACAGATTTTTTACTTTTATA  450

seq1  TGGAAAAATTAAACAGAAATTATTAAACAAATACAAAGTAAGATAGCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAATTAAACAGAAATTATTAAACAAATACAAAGTAAGATAGCAAT  500

seq1  TCTATAGTAAATATAAAACTTTGCTACCAATGGTCAGTTGACAATAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGTAAATATAAAACTTTGCTACCAATGGTCAGTTGACAATAACTT  550

seq1  CTTGCTAAGATCTTCTCATTTTCTTTGTGACACTGTAACGAGTTGTAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTAAGATCTTCTCATTTTCTTTGTGACACTGTAACGAGTTGTAAAG  600

seq1  GGAAATGTCTTGAAATATTGTAAACTATTATTGAAGCATGGTTTTCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGTCTTGAAATATTGTAAACTATTATTGAAGCATGGTTTTCTTTT  650

seq1  GCTAAATTTACCCTTCTCTGATATTAGTGATTTCCCTGAATCCACTCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATTTACCCTTCTCTGATATTAGTGATTTCCCTGAATCCACTCTTG  700

seq1  TCCAGTATGCTTGGCCATATGGGATCACCTTGGTGCAAGAACTTCCACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTATGCTTGGCCATATGGGATCACCTTGGTGCAAGAACTTCCACAT  750

seq1  AGACTGACATAGATATACTATGTCAGTGTCCACAGGACAGGAAGGC-TTG  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGACTGACATAGATATACTATGTCAGTGTCCACAGGACAGGAAGGCTTTG  800

seq1  TGAACCAGATTC-AAATGTAAATCATAGATATTATCAAAAAAT-AAGTAA  847
      |||||||||||| |||||||||||||||||||||||||||||| || |||
seq2  TGAACCAGATTCAAAATGTAAATCATAGATATTATCAAAAAATAAATTAA  850

seq1  AGCAACATGAG-AAGCAAAAGGTGG-TGAGATAAA-TTAGCATCA-TTAA  893
      ||||||||||| ||||||||||||| ||||||||| ||||||||| ||||
seq2  AGCAACATGAGAAAGCAAAAGGTGGTTGAGATAAATTTAGCATCATTTAA  900

seq1  AATCGTGTACAAGAGAGATGTAAG-TACC-AAGTCACC-TCAATT-CGGA  939
      |||||||||||||||||||||||| |||| |||||||| |||||| ||||
seq2  AATCGTGTACAAGAGAGATGTAAGTTACCAAAGTCACCTTCAATTCCGGA  950

seq1  GCA-CACTATACTCCTTCATG-TTCTATTTC--TTTCTCTG-CCACGTCA  984
      ||| ||||||||||||||||| |||||||||  || ||||| ||||||||
seq2  GCACCACTATACTCCTTCATGTTTCTATTTCCTTTCCTCTGCCCACGTCA  1000

seq1  GTCTTTCACA-CTCATGACA-TTCATA-TAAAAACAAAGCTATTGAA-TA  1030
      |||||||||| ||||||||| |||||| ||||||||||||||||||| ||
seq2  GTCTTTCACACCTCATGACATTTCATATTAAAAACAAAGCTATTGAACTA  1050

seq1  GTGGAA-CTAATAGGCATAAAGC--TGCATTGGGA--TAGGCTAT-TGAT  1074
      || ||| |||||| |||||||||   ||||| |||  |||  ||| ||||
seq2  GTTGAACCTAATACGCATAAAGCCTGGCATTTGGAATTAGCTTATCTGAT  1100

seq1  G-TATTG-TAGAG-ATCCAGGAATAGGAATA-AC--TTGGATAAAGC  1115
      | ||||| || || ||||| ||||||||||| ||   ||||||||||
seq2  GTTATTGTTAAAGAATCCA-GAATAGGAATACACCTCTGGATAAAGC  1146


| Home | SequenceCutter | Blast | Download |