BAC Information

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BAC

Clone NameB6Ng01-199J04
Chromosome14 (Build37)
Map Location 44,102,029 - 44,103,179
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502
Downstream geneLOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199J04.bB6Ng01-199J04.g
ACCGA020871GA020872
length1,2051,150
definitionB6Ng01-199J04.b B6Ng01-199J04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttcccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgtttaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtatctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataaatatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccatagtgtgtgggttcatttctgggtcttcaattctattccattggt
ctacttgtctgtctctataccagtaccatgcagtttttatcacaattgct
ctgtagtaaagctttaggtctggcatggtgattccgccagaagtttttta
tccttgagaagactttttgctatcctaggttttttgttattccagacaaa
tttgcaaattgctccttccaattcgttgaagaattgagttggaattttga
tggggattgcattgaatctgtagattgcttttggcaagatagccattttt
acaatgttgatcctgccaatccatgagcatgggagatctttccatcttct
gagatcttccttaattttctttcttcagagatttgaagtttttatcatac
agatctttcacttccttaagttagagtcacgccaagatatttatattatt
tgtgactattgagaagggtgttgtttccttattttcttttcctcagcctg
attattctttgtatagagaaagggccattgacttggtttgagtttattta
ttatccagctacttccaccgaaagcctgcttatcaagtttaggagttctc
tcctggtagaaattttacggctactgatacatataccatatccatatcat
ctgccaaggtggaatttggaactttcctctttgcctaaattgtgtagtcc
ccttg
gaattctagtaatacagtggttcacagtaaatgaggtgaacagatgattc
caaaaaggagtgaaatggtgaataaataatgaaccacattaaatattttc
aggcataaaaggaatgaacatttaaagaaaaccacaccaacatgcaatct
cattccagacagcatgtgcacaattaagggaacaaacaacaaatggttta
gaggatgtgaggaaaggagcattattcactaagactggaaactagcaaag
ccgctggagaaaaccttggtttagaggatgctcaaagtcctgaaatagaa
ctgcaatgtatgctgcaatcctacatttaaacatttacctggaagattga
tgtcagtagaggtgcctgcatacaaggatgtgccctgcagcactgtacac
gaaaccacattgtagaaaatgcctggaaacacattactagaccaaaacat
tgggaaatgggaaatgttattcagaatgcacttatgtcatctgctgaaga
atggagggaatggaagacagtcaaagagatgaaatgaaccaaaatcaaaa
ggacaaataccgcacattttctctcatcatgctgaatctaaacttaaatt
aagatgatatcaaaggtttactgggaatattctgagaaatggtcagtata
aaggatgcggtgtgataggagatgatgaacagagagaattctatgaatgc
attgtttgcatttgtgacaatgttgcaaggtgcacataatagatgctata
acagcctatgtaataatacatggcagtacataatattatacaaaagcttg
aggcctgagttcagagtcctatcacccctatctaaagcttctcatggagt
catgcacctgtaataacagcagtggggcgacacctaggcaaatccctgag
tacactgggtagtgtagccaattgctgaggtccctgatcagtgagagatc
tgttcttcaaaattacatgttactgtgtttgacgcagattcccagtagtg
acctctgaccctcaaccttgtatgcacaaccccacacccctttaaaaaga
acattgtcatgaaagcatactgacctatgtaatgatgtcaatccctgtaa
cctaggtatgcctcatcatgtcctgcgctgcactctgtcaaacactttct

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_44102029_44103179
seq2: B6Ng01-199J04.g_64_1213

seq1  GAATTCTAGTAATACAGTGGTTCACAGTAAATGAGGTGAACAGATGATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTAATACAGTGGTTCACAGTAAATGAGGTGAACAGATGATTC  50

seq1  CAAAAAGGAGTGAAATGGTGAATAAATAATGAACCACATTAAATATTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGGAGTGAAATGGTGAATAAATAATGAACCACATTAAATATTTTC  100

seq1  AGGCATAAAAGGAATGAACATTTAAAGAAAACCACACCAACATGCAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAAAAGGAATGAACATTTAAAGAAAACCACACCAACATGCAATCT  150

seq1  CATTCCAGACAGCATGTGCACAATTAAGGGAACAAACAACAAATGGTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCAGACAGCATGTGCACAATTAAGGGAACAAACAACAAATGGTTTA  200

seq1  GAGGATGTGAGGAAAGGAGCATTATTCACTAAGACTGGAAACTAGCAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGTGAGGAAAGGAGCATTATTCACTAAGACTGGAAACTAGCAAAG  250

seq1  CCGCTGGAGAAAACCTTGGTTTAGAGGATGCTCAAAGTCCTGAAATAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTGGAGAAAACCTTGGTTTAGAGGATGCTCAAAGTCCTGAAATAGAA  300

seq1  CTGCAATGTATGCTGCAATCCTACATTTAAACATTTACCTGGAAGATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAATGTATGCTGCAATCCTACATTTAAACATTTACCTGGAAGATTGA  350

seq1  TGTCAGTAGAGGTGCCTGCATACAAGGATGTGCCCTGCAGCACTGTACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTAGAGGTGCCTGCATACAAGGATGTGCCCTGCAGCACTGTACAC  400

seq1  GAAACCACATTGTAGAAAATGCCTGGAAACACATTACTAGACCAAAACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCACATTGTAGAAAATGCCTGGAAACACATTACTAGACCAAAACAT  450

seq1  TGGGAAATGGGAAATGTTATTCAGAATGCACTTATGTCATCTGCTGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAATGGGAAATGTTATTCAGAATGCACTTATGTCATCTGCTGAAGA  500

seq1  ATGGAGGGAATGGAAGACAGTCAAAGAGATGAAATGAACCAAAATCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGGAATGGAAGACAGTCAAAGAGATGAAATGAACCAAAATCAAAA  550

seq1  GGACAAATACCGCACATTTTCTCTCATCATGCTGAATCTAAACTTAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAATACCGCACATTTTCTCTCATCATGCTGAATCTAAACTTAAATT  600

seq1  AAGATGATATCAAAGGTTTACTGGGAATATTCTGAGAAATGGTCAGTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGATATCAAAGGTTTACTGGGAATATTCTGAGAAATGGTCAGTATA  650

seq1  AAGGATGCGGTGTGATAGGAGATGATGAACAGAGAGAATTCTATGAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAGGATGCGGTGTGATAGGAGATGATGAACAGAGAGAATTCTATG-AATG  699

seq1  CATTGTTTGCATTTGTGACAATGTTGCAAGGTGCACATAATAGATGCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTTGCATTTGTGACAATGTTGCAAGGTGCACATAATAGATGCTAT  749

seq1  AACAGCCTATGTAATAATACATGGCAGTACATAATATTATACAAAAGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCTATGTAATAATACATGGCAGTACATAATATTATACAAAAGCTT  799

seq1  GAGGCCTGAGTTCAGAGTCCTATCACCCCTATCTAAAGCTTCTCATGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTGAGTTCAGAGTCCTATCACCCCTATCTAAAGCTTCTCATGGAG  849

seq1  TCATGCACCTGTAATAACAGCAGTGGGGCGACACCTAGGCAAATCCCTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCACCTGTAATAACAGCAGTGGGGCGACACCTAGGCAAATCCCTGA  899

seq1  GTACACTGGGTAGTGTAGCCAATTGCTGAGGTCCCTGATCAGTGAGAGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTGGGTAGTGTAGCCAATTGCTGAGGTCCCTGATCAGTGAGAGAT  949

seq1  CTGTTCTTCAAAATTACAATGTTACTGTGTTTGACGCAGATTCCCAGTAG  1000
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTGTTCTTCAAAATTAC-ATGTTACTGTGTTTGACGCAGATTCCCAGTAG  998

seq1  TGACCTCTGA-CCTCAA-CTTGTATGCACAACCCCACACCCCTT--AAAA  1046
      |||||||||| |||||| ||||||||||||||||||||||||||  ||||
seq2  TGACCTCTGACCCTCAACCTTGTATGCACAACCCCACACCCCTTTAAAAA  1048

seq1  GAACATTGTCATG-AAGCATTACTGACTAATGTATTGATGTCATCCCTTG  1095
      ||||||||||||| ||||| |||||||  ||||| ||||||||  || ||
seq2  GAACATTGTCATGAAAGCA-TACTGACCTATGTAATGATGTCAATCCCTG  1097

seq1  TAAACTTAGTATGCTTCATCATGT-CTGCGGCTTCCACTCTGTTCAAACA  1144
      ||| ||  |||||| ||||||||| |||||   | ||||||| |||||| 
seq2  TAACCTAGGTATGCCTCATCATGTCCTGCG--CTGCACTCTG-TCAAAC-  1143

seq1  ACTTTCT  1151
      |||||||
seq2  ACTTTCT  1150