BAC Information

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BAC

Clone NameB6Ng01-199J19
Chromosome14 (Build37)
Map Location 9,794,768 - 9,795,766
singlet/doubletsinglet
Overlap geneLOC100041948
Upstream geneDnase1l3, Abhd6, Rpp14, Pxk, Pdhb, Kctd6, Acox2, BC055107, Oit1, LOC667005, 4930452B06Rik
Downstream geneFhit, LOC100042415
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199J19.bB6Ng01-199J19.g
ACCGA020901GA020902
length1,1991,009
definitionB6Ng01-199J19.b B6Ng01-199J19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccatttttaatggggttatttgattt
tctgaagtccaccttcttgagttctttatatatgttggatattagtcccc
tatctgatttaggataggtaaagatcctttcccactctgttggtggtctt
tttgtcttattgacggtgtcttttgccttgcagaaactttggagtttcat
gaggtcccatttgtcaattctctatcttacagcacaagccattgctgttc
tattcaggaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtgaagttccttgat
ccacttagatttgaccttagtacaaggagacaggtatggatcaattcaca
ttcttctacatgataacaaccagttgtgccagcaccaattgttgaaaatg
ctgtctttcttccactggatggttttagctcccttgtcgaagatcaagta
accataggtgtgtgggttcatctctgggtcttcaattctattccattggt
ctacttgtctgtcagtataccagtaccatgcagtttttatcccaattgct
ctgtagtaaaactttaggtcaggcatggtgattccacgagaggttctttt
atccttgagaagagtttttgctatcctaggttttttgttattccagatga
atttgcagattgctctttctaattcgttgaagaattgagttggaattttg
atggggattgcattgaatctgcagattgcttttggcaagatagccatttt
tacaatgttgatcctgccaatccatgagcatgggagatctttccatcttc
tgagaccttctttaatttctttcttcagagacttgaagtttttatcatac
agatctttcacttcctttagttagagtcacgccaagatattttatattat
tttgttgacttattgagaaaggtgttgttcccttaatttctttcttcagc
ctgtttattcttttgtgtatagaaaggccattgatttgttgagtttattt
tattatccagctacttcattgaagctgttatccagcttaaggagttctct
gttggaaatctttaaggtcacttaatatactatcaagcatctggcaaaaa
agcgaaagttttggaacttcctctctcttttccaatatttgtgatatct
gaattcttatttgttcttgttcctgaagtctcctttttaggtcactataa
tactattggttagtctggagaggggacggaattgaggaaagtggacactc
agtatatggaggtaaaagcatgtgtctaaaggtgtacgcttgtatgcaca
ttcctgtatgtgcatgcctgtgtgtgcagcctgtgtgtgcagcctgtgtg
tactgcctgtgtgtgcagcctgtgtgtgcagcctgtgtgtgcagcctgta
tgggcatgcctgtgtgtgcagcctgtgtgtgcatgcctatatgcatatgc
ctgtgtgtgcagcctgtgtgtgcatgcctgtgtgtgcagcctgtatgggc
atgcctgtgtgtgcagcctgtgtgtgcatgcctatatgcatatgcctgtg
tgtgcaacctgtgtattcatgagtaggccagagaagggtgctaagtgtat
ccctctgttactttctgctttattccttttagactgggtcattcatattc
tctggctaagcttatgaccatcaagtcttcatatcatgctatatctgtgt
tgggatccaatacacatctttgaacaacaagcattgcagagacatctgtc
aatcccccaaaaggaaagaggttttagagaattgatctctatatttcctt
ttgttggacgaagctatattaggaaagtcagggctatgacatatttgttg
tggagaatgaaggagggatgtaggcatccaagctgggtcatgcattctag
aacagtagcatttctgtgaatatctcagctctgtgacttggggcagtcat
tcagtgacgttactacccttgcccattggtatggagataatgtacttcaa
atgaatttctttttgcaagacggccaaaaatttacataaaactgtgtcct
attctataatgcttgtattagagagtgctcaggcaagttgtttcaccctt
aaccctgggactaaggtggcagtttcacttcttcccgtgtttggagcatg
cacaggact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_9794768_9795766
seq2: B6Ng01-199J19.g_65_1073

seq1  GAATTCTTATTTGTTCTTGTTCCTGAAGTCTCCTTTTTAGGTCACTATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTTGTTCTTGTTCCTGAAGTCTCCTTTTTAGGTCACTATAA  50

seq1  TACTATTGGTTAGTCTGGAGAGGGGACGGAATTGAGGAAAGTGGACACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTGGTTAGTCTGGAGAGGGGACGGAATTGAGGAAAGTGGACACTC  100

seq1  AGTATATGGAGGTAAAAGCATGTGTCTAAAGGTGTACGCTTGTATGCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATGGAGGTAAAAGCATGTGTCTAAAGGTGTACGCTTGTATGCACA  150

seq1  TTCCTGTATGTGCATGCCTGTGTGTGCAGCCTGTGTGTGCAGCCTGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTATGTGCATGCCTGTGTGTGCAGCCTGTGTGTGCAGCCTGTGTG  200

seq1  TACTGCCTGTGTGTGCAGCCTGTGTGTGCAGCCTGTGTGTGCAGCCTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCTGTGTGTGCAGCCTGTGTGTGCAGCCTGTGTGTGCAGCCTGTA  250

seq1  TGGGCATGCCTGTGTGTGCAGCCTGTGTGTGCATGCCTATATGCATATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATGCCTGTGTGTGCAGCCTGTGTGTGCATGCCTATATGCATATGC  300

seq1  CTGTGTGTGCAGCCTGTGTGTGCATGCCTGTGTGTGCAGCCTGTATGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTGCAGCCTGTGTGTGCATGCCTGTGTGTGCAGCCTGTATGGGC  350

seq1  ATGCCTGTGTGTGCAGCCTGTGTGTGCATGCCTATATGCATATGCCTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGTGTGTGCAGCCTGTGTGTGCATGCCTATATGCATATGCCTGTG  400

seq1  TGTGCAACCTGTGTATTCATGAGTAGGCCAGAGAAGGGTGCTAAGTGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAACCTGTGTATTCATGAGTAGGCCAGAGAAGGGTGCTAAGTGTAT  450

seq1  CCCTCTGTTACTTTCTGCTTTATTCCTTTTAGACTGGGTCATTCATATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGTTACTTTCTGCTTTATTCCTTTTAGACTGGGTCATTCATATTC  500

seq1  TCTGGCTAAGCTTATGACCATCAAGTCTTCATATCATGCTATATCTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTAAGCTTATGACCATCAAGTCTTCATATCATGCTATATCTGTGT  550

seq1  TGGGATCCAATACACATCTTTGAACAACAAGCATTGCAGAGACATCTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCCAATACACATCTTTGAACAACAAGCATTGCAGAGACATCTGTC  600

seq1  AATCCCCCAAAAGGAAAGAGGTTTTAGAGAATTGATCTCTATATTTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCCAAAAGGAAAGAGGTTTTAGAGAATTGATCTCTATATTTCCTT  650

seq1  TTGTTGGACGAAGCTATATTAGGAAAGTCAGGGCTATGACATATTTGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGACGAAGCTATATTAGGAAAGTCAGGGCTATGACATATTTGTTG  700

seq1  TGGAGAATGAAGGAGGGATGTAGGCATCCAAGCTGGGTCATGCATTCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAATGAAGGAGGGATGTAGGCATCCAAGCTGGGTCATGCATTCTAG  750

seq1  AACAGTAGCATTTCTGTGAATATCTCAGCTCTGTGACTTGGGGCAGTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAGCATTTCTGTGAATATCTCAGCTCTGTGACTTGGGGCAGTCAT  800

seq1  TCAGTGACGTTACTACCCTTGCCCA-TGGTATGGAGATAATGTACTTCAA  849
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCAGTGACGTTACTACCCTTGCCCATTGGTATGGAGATAATGTACTTCAA  850

seq1  ATGAATTTC-TTTTGCAAGACGGCCAAAAA-TTACATAAAACTGTGTCCT  897
      ||||||||| |||||||||||||||||||| |||||||||||||||||||
seq2  ATGAATTTCTTTTTGCAAGACGGCCAAAAATTTACATAAAACTGTGTCCT  900

seq1  ATTCTAT-ATGC-TGTA-TAGAGAGTGCTCA-GCAAG-TGTTCCA-CCTT  941
      ||||||| |||| |||| ||||||||||||| ||||| |||| || ||||
seq2  ATTCTATAATGCTTGTATTAGAGAGTGCTCAGGCAAGTTGTTTCACCCTT  950

seq1  AA-CCTGGGACTAAGGGTGGCAGTTTTCAC-TCTT-CCGTG-TTGGAGCA  987
      || ||||||||||| |||||||| |||||| |||| ||||| ||||||||
seq2  AACCCTGGGACTAA-GGTGGCAG-TTTCACTTCTTCCCGTGTTTGGAGCA  998

seq1  TGCACAAGGACT  999
      ||||| ||||||
seq2  TGCAC-AGGACT  1009