BAC Information

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BAC

Clone NameB6Ng01-199L08
Chromosome14 (Build37)
Map Location 49,922,487 - 50,061,540
singlet/doubletdoublet
Overlap geneSlc35f4
Upstream geneLOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik
Downstream gene3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199L08.bB6Ng01-199L08.g
ACCGA020973GA020974
length1,070296
definitionB6Ng01-199L08.b B6Ng01-199L08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,922,487 - 49,923,539)(50,061,245 - 50,061,540)
sequence
gaattccatgcacatggaagtggccaaagggaagtgacattttggttatg
attggctccagctagactatttctggccaggaaatgatcagagcagtttt
aattagtatactttgatcttatggcaacactaccaacttccaaatatact
attgattttcactcaacttagaggtaatgagagatgataaccatacagtt
ttggccttgggaagcagaactccagggaccaacatttaatgcttgatctt
tttcttgaatgttttcagtttaaggaccttccctgagggatctagactga
agtggaaaaagatgagccaatcgatgatcttgctggaatcaggacttttt
tttttcccttggaactgcagtattgctactgtttccagagtcacgttggc
ttagaaggtcaggagaagggcaatgctggccctgcagggctagtacattg
ggtaaatgtggaacaaaagagtgattgacactgggcagtatatgcaagaa
gcagaatgaagctggctttattcagaataagctctgggaattggggtttg
ccgttttcaatagcttgggaggaggaacagggtcctcttacatcaagtac
aggtagatgaacatctggaaagtgggagctgggagttcagctccagagtt
ttaggacacctaaggaaagactctgggtgacctttatttggctttcaaat
gggcacattctgcttagccagggccaccaagctcagcacatgctacgttc
tttctctcctgaaaggggattcctggtggattctccatgctcagtagagt
gggctgttccgtatgcaggtatgagcctgtcatgtccagctctaagataa
agtagattttaaacccgagccctctcaatgtggtgcttcaacttcttcat
gatcttcaatctctcttgaattttgttcccttccctcctgtccccttggg
ctccttcttcacttctttgcttcatgtccatctcagctgaatctcagtgc
tctagcttacttttggaggcatttggaatggcatcgggccattattaact
ttcttgccctggtcatacta
ttagtcaccagggactagaactctttggtagaattagaaggattagggga
tgtggtctagttgaagtaagtgtggctttgttgaaggaagcatgtcactg
gggatgaagggctgaaaagcccattgttaggctcagctcttactctcttc
tgcagatcagcatgcagatctcagccatttgtcttcctggtggagagttc
ctcctgaaatttggtggcattccttaatggttttagtcatttttctgttc
tttgaaagttaattgtgtatgtgtgtgtgtgtgagtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_49922487_49923539
seq2: B6Ng01-199L08.b_41_1110

seq1  GAATTCCATGCACATGGAAGTGGCCAAAGGGAAGTGACATTTTGGTTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCACATGGAAGTGGCCAAAGGGAAGTGACATTTTGGTTATG  50

seq1  ATTGGCTCCAGCTAGACTATTTCTGGCCAGGAAATGATCAGAGCAGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTCCAGCTAGACTATTTCTGGCCAGGAAATGATCAGAGCAGTTTT  100

seq1  AATTAGTATACTTTGATCTTATGGCAACACTACCAACTTCCAAATATACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTATACTTTGATCTTATGGCAACACTACCAACTTCCAAATATACT  150

seq1  ATTGATTTTCACTCAACTTAGAGGTAATGAGAGATGATAACCATACAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTTTCACTCAACTTAGAGGTAATGAGAGATGATAACCATACAGTT  200

seq1  TTGGCCTTGGGAAGCAGAACTCCAGGGACCAACATTTAATGCTTGATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTTGGGAAGCAGAACTCCAGGGACCAACATTTAATGCTTGATCTT  250

seq1  TTTCTTGAATGTTTTCAGTTTAAGGACCTTCCCTGAGGGATCTAGACTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGAATGTTTTCAGTTTAAGGACCTTCCCTGAGGGATCTAGACTGA  300

seq1  AGTGGAAAAAGATGAGCCAATCGATGATCTTGCTGGAATCAGGACTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAAAAGATGAGCCAATCGATGATCTTGCTGGAATCAGGACTTTTT  350

seq1  TTTTTCCCTTGGAACTGCAGTATTGCTACTGTTTCCAGAGTCACGTTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCTTGGAACTGCAGTATTGCTACTGTTTCCAGAGTCACGTTGGC  400

seq1  TTAGAAGGTCAGGAGAAGGGCAATGCTGGCCCTGCAGGGCTAGTACATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGGTCAGGAGAAGGGCAATGCTGGCCCTGCAGGGCTAGTACATTG  450

seq1  GGTAAATGTGGAACAAAAGAGTGATTGACACTGGGCAGTATATGCAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATGTGGAACAAAAGAGTGATTGACACTGGGCAGTATATGCAAGAA  500

seq1  GCAGAATGAAGCTGGCTTTATTCAGAATAAGCTCTGGGAATTGGGGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATGAAGCTGGCTTTATTCAGAATAAGCTCTGGGAATTGGGGTTTG  550

seq1  CCGTTTTCAATAGCTTGGGAGGAGGAACAGGGTCCTCTTACATCAAGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTTTCAATAGCTTGGGAGGAGGAACAGGGTCCTCTTACATCAAGTAC  600

seq1  AGGTAGATGAACATCTGGAAAGTGGGAGCTGGGAGTTCAGCTCCAGAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGATGAACATCTGGAAAGTGGGAGCTGGGAGTTCAGCTCCAGAGTT  650

seq1  TTAGGACACCTAAGGAAAGACTCTGGGTGACCTTTATTTGGCTTTCAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACACCTAAGGAAAGACTCTGGGTGACCTTTATTTGGCTTTCAAAT  700

seq1  GGGCACATTCTGCTTAGCCAGGGCCACCAAGCTCAGCACATGCTACGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACATTCTGCTTAGCCAGGGCCACCAAGCTCAGCACATGCTACGTTC  750

seq1  TTTCTCTCCTGAAAGGGGATTCCTGGTGGATTCTCCATGCTCAGTAGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCCTGAAAGGGGATTCCTGGTGGATTCTCCATGCTCAGTAGAGT  800

seq1  GGGCTGTTCCGTATGCAGGTATGAGCCTGTCATGTCCAGCTCTAAGATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTTCCGTATGCAGGTATGAGCCTGTCATGTCCAGCTCTAAGATAA  850

seq1  AGTAGATTTTAAA-CCGAGCCCTCTCAATGTGGTGCTTCAACTTCTTCAT  899
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGTAGATTTTAAACCCGAGCCCTCTCAATGTGGTGCTTCAACTTCTTCAT  900

seq1  GATCTTC-ATCTCTCTTGAATTTTGTTCCCTTCCCTCCTGTCCCCTT-GG  947
      ||||||| ||||||||||||||||||||||||||||||||||||||| ||
seq2  GATCTTCAATCTCTCTTGAATTTTGTTCCCTTCCCTCCTGTCCCCTTGGG  950

seq1  CTCC-TCTTCACTTCTTTGCTTCATGTCCATCTCAGCTG-ATCTCAGTGC  995
      |||| |||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTCCTTCTTCACTTCTTTGCTTCATGTCCATCTCAGCTGAATCTCAGTGC  1000

seq1  TCTAGC-TACTTT--GA-GCATTT-GAAT-GCATC-GGCCATTATT-ACT  1037
      |||||| ||||||  || |||||| |||| ||||| |||||||||| |||
seq2  TCTAGCTTACTTTTGGAGGCATTTGGAATGGCATCGGGCCATTATTAACT  1050

seq1  T--CTGCC--TGTCATACTA  1053
      |   ||||   |||||||||
seq2  TTCTTGCCCTGGTCATACTA  1070

seq1: chr14_50061245_50061540
seq2: B6Ng01-199L08.g_69_364 (reverse)

seq1  ACACACACACACTCACACACACACACATACACAATTAACTTTCAAAGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACTCACACACACACACATACACAATTAACTTTCAAAGAAC  50

seq1  AGAAAAATGACTAAAACCATTAAGGAATGCCACCAAATTTCAGGAGGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATGACTAAAACCATTAAGGAATGCCACCAAATTTCAGGAGGAAC  100

seq1  TCTCCACCAGGAAGACAAATGGCTGAGATCTGCATGCTGATCTGCAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACCAGGAAGACAAATGGCTGAGATCTGCATGCTGATCTGCAGAAG  150

seq1  AGAGTAAGAGCTGAGCCTAACAATGGGCTTTTCAGCCCTTCATCCCCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAGAGCTGAGCCTAACAATGGGCTTTTCAGCCCTTCATCCCCAGT  200

seq1  GACATGCTTCCTTCAACAAAGCCACACTTACTTCAACTAGACCACATCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGCTTCCTTCAACAAAGCCACACTTACTTCAACTAGACCACATCCC  250

seq1  CTAATCCTTCTAATTCTACCAAAGAGTTCTAGTCCCTGGTGACTAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCCTTCTAATTCTACCAAAGAGTTCTAGTCCCTGGTGACTAA  296