BAC Information

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BAC

Clone NameB6Ng01-199M07
Chromosome14 (Build37)
Map Location 75,085,602 - 75,232,613
singlet/doubletdoublet
Overlap geneHtr2a, LOC668508, Esd, Lrch1
Upstream geneLOC100043734, EG629578, LOC629583
Downstream geneENSMUSG00000075519, LOC100043169, 5031414D18Rik, 4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13, Gm912, Spert, 4930564B18Rik, Cog3, Slc25a30
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199M07.bB6Ng01-199M07.g
ACCGA021013GA021014
length1,1961,023
definitionB6Ng01-199M07.b B6Ng01-199M07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,231,413 - 75,232,613)(75,085,602 - 75,086,611)
sequence
gaattccttattacagtttgctgtgactttcttattaaacttgtgacaag
ccacaacttgcagatgagccggagaccttctccttgatggccctggacaa
ataggcatgtctgaatgtttccttacagtagaaccaggtcaggttgcgag
catctgtagccttctgtagactaaatctcacttaaactcaactaaaacct
ttggaacttgttgaacttgtgtgtgtatgtgtgtttgcatgtttataaat
gtatttggaggccagagataagtcttgggtgtcttccttaatgggttctc
catttgcatacgtgtctctctgtgtgtttgtgtatgcacaagtgttggta
tggtagtgcatttatgtgtgtacacgtaacatatgtgcctgttcccgtgc
atggggaagccagagaaggatgttcagggttctctgtcactctctgccat
attcccaggagacatgatctctcggagaacctagacgctgtatttcggca
agactggcaggacagcaggccccagcagtcctctcttagccttccactca
cagtgcagaggacgatagacacacagcaccacacttggctttgagattca
ctctggagatctgcctcaggtcctcatactcctgctataaggactcctac
tgagtgaggccagactccgggacttctaccttattttttgaggtgggatc
tctcactgactgagctattctagctgaccagcaagccccaggaatcttct
agttcccgtccctcctcccagggctgggattacaggcagctgcttctggc
ccagctttttaacacagttgctggagatacaaattcaatgccttacaagg
gtttcactggccgagccatctctggaaatgtgcttctttttctgtccgat
cctgctgacagatgaggtgtgtctggtgagagtgctctatcatgggccac
atgtacagttgactagcagctgtgaagactggcatgctacagctcagtaa
agtcgggtccttttacagatgagacctttgcaggacccagggagttccac
cctggtgctgtgcacttggagtgggtgctggccctcgctggcttgcctgc
attctctcaatgtctccctggctgacattcccatcttggccaatgctaga
acgagggcctgacttaggaacctgctctcaagcagaaggcacacca
gaattctgtgcctaagccttgactttgtcttttcaaaatggtatattagt
ttgattataaatctatgagggactgatgccttgcttttactttaatgagt
ttctacagagaaaaatttcaactgtgtactctcacaagggatgagacagt
actggcaggggcccaagaatgtcttgagtcttgttctcagcccactgcga
aatgcctcagttttctaagacaaagcacaggaagggactactttcatcta
cccctttgtcctcaactcacatcacatcattgcttcccccattggatgct
aggaagcaggtcccttataagaaggtctaggtgagagcaggtgggatcag
aaggcagcataagttctagcattcagtgccatttcagacctttgatacct
cttatttttggagagcctacttacatatatataaatgtgttatgctaaat
aacttagatgtttaactattaggcatgtccaatgaataggaacattttaa
cagatatttaaatgtattaattctgagattgcaaattgtcatattttgga
taatacatttttccacacttaaaattctcatagattcctacctgcctgtc
tgccaccttcattagggagggtaatgtggggattctacctatgtttacat
gtttgttggctacatggaatgaagggcattctaaaagcattaaaaaataa
ataaaaagcaaagaaaaatgtctctatttgggtattccttccccattttc
tcactccccgaggagctgcaaactgaaagcgacatgaccatatatggttc
caaagagatgtctacagagatctctttgctaaaagacatactagatttaa
gtcctgtgaaatttttgtttcgaagatccataatgttttatcagactgtc
tgtatttttagtcttgtattttgtagtaggtgtccctgaagttgaccagc
cctacaagtatccctttctgaatgatatggcagggggtgaatcacttccc
tgggtttgggtgcagctatggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_75231413_75232613
seq2: B6Ng01-199M07.b_50_1245 (reverse)

seq1  TGGTGGGCCTTCTGCTGTGAAGGCAGGCTCCTAAGTCAGGCCCTCTGTTC  50
      ||||| |||||||||| |||  ||||| ||||||||||||||||| ||||
seq2  TGGTGTGCCTTCTGCT-TGAGAGCAGGTTCCTAAGTCAGGCCCTC-GTTC  48

seq1  TTCTGCA-TGGC--AGATGGGGATGCTCAGCCAGGGAGGACA-TGAGAGA  96
      |   ||| ||||  ||||||| ||| ||||||||||| |||| |||||||
seq2  T--AGCATTGGCCAAGATGGGAATG-TCAGCCAGGGA-GACATTGAGAGA  94

seq1  AAGCAAGCAAAGCCAGCGA-GGCCAGCAACCCACT-CAAGTGCACAGCAC  144
      | ||| || |||||||||| ||||||| ||||||| ||||||||||||||
seq2  ATGCAGGC-AAGCCAGCGAGGGCCAGC-ACCCACTCCAAGTGCACAGCAC  142

seq1  CAGGGTGGAACT-CCTGGGTCCTTGGCAAAGGTCTCATCTGTAAAAGGAC  193
      |||||||||||| ||||||||||  |||||||||||||||||||||||||
seq2  CAGGGTGGAACTCCCTGGGTCCT--GCAAAGGTCTCATCTGTAAAAGGAC  190

seq1  CCGACTTTACTGAGCTGTTAGCATGCCAGTCTTCACAGCTGCTAGTCAAC  243
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCGACTTTACTGAGCTG-TAGCATGCCAGTCTTCACAGCTGCTAGTCAAC  239

seq1  TGTAACATGTGG-CCATGATAGAGCACCTCTCACCAGACACACCTCATCT  292
      ||| |||||||| ||||||||||||| |||||||||||||||||||||||
seq2  TGT-ACATGTGGCCCATGATAGAGCA-CTCTCACCAGACACACCTCATCT  287

seq1  GTCAGCAGGATCGGACAGAAAAAGAAGCACATTTCCAGAGATGGCTCGGC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCAGGATCGGACAGAAAAAGAAGCACATTTCCAGAGATGGCTCGGC  337

seq1  CAGTGAAACCCTTGTAAGGCATTGAATTTGTATCTCCAGCAACTGTGTTA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAACCCTTGTAAGGCATTGAATTTGTATCTCCAGCAACTGTGTTA  387

seq1  AAAAGCTGGGCCAGAAGCAGCTGCCTGTAATCCCAGCCCTGGGAGGAGGG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTGGGCCAGAAGCAGCTGCCTGTAATCCCAGCCCTGGGAGGAGGG  437

seq1  ACGGGAACTAGAAGATTCCTGGGGCTTGCTGGTCAGCTAGAATAGCTCAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGAACTAGAAGATTCCTGGGGCTTGCTGGTCAGCTAGAATAGCTCAG  487

seq1  TCAGTGAGAGATCCCACCTCAAAAAATAAGGTAGAAGTCCCGGAGTCTGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAGAGATCCCACCTCAAAAAATAAGGTAGAAGTCCCGGAGTCTGG  537

seq1  CCTCACTCAGTAGGAGTCCTTATAGCAGGAGTATGAGGACCTGAGGCAGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTCAGTAGGAGTCCTTATAGCAGGAGTATGAGGACCTGAGGCAGA  587

seq1  TCTCCAGAGTGAATCTCAAAGCCAAGTGTGGTGCTGTGTGTCTATCGTCC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGAGTGAATCTCAAAGCCAAGTGTGGTGCTGTGTGTCTATCGTCC  637

seq1  TCTGCACTGTGAGTGGAAGGCTAAGAGAGGACTGCTGGGGCCTGCTGTCC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACTGTGAGTGGAAGGCTAAGAGAGGACTGCTGGGGCCTGCTGTCC  687

seq1  TGCCAGTCTTGCCGAAATACAGCGTCTAGGTTCTCCGAGAGATCATGTCT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTCTTGCCGAAATACAGCGTCTAGGTTCTCCGAGAGATCATGTCT  737

seq1  CCTGGGAATATGGCAGAGAGTGACAGAGAACCCTGAACATCCTTCTCTGG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAATATGGCAGAGAGTGACAGAGAACCCTGAACATCCTTCTCTGG  787

seq1  CTTCCCCATGCACGGGAACAGGCACATATGTTACGTGTACACACATAAAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCATGCACGGGAACAGGCACATATGTTACGTGTACACACATAAAT  837

seq1  GCACTACCATACCAACACTTGTGCATACACAAACACACAGAGAGACACGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTACCATACCAACACTTGTGCATACACAAACACACAGAGAGACACGT  887

seq1  ATGCAAATGGAGAACCCATTAAGGAAGACACCCAAGACTTATCTCTGGCC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAATGGAGAACCCATTAAGGAAGACACCCAAGACTTATCTCTGGCC  937

seq1  TCCAAATACATTTATAAACATGCAAACACACATACACACACAAGTTCAAC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATACATTTATAAACATGCAAACACACATACACACACAAGTTCAAC  987

seq1  AAGTTCCAAAGGTTTTAGTTGAGTTTAAGTGAGATTTAGTCTACAGAAGG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCAAAGGTTTTAGTTGAGTTTAAGTGAGATTTAGTCTACAGAAGG  1037

seq1  CTACAGATGCTCGCAACCTGACCTGGTTCTACTGTAAGGAAACATTCAGA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGATGCTCGCAACCTGACCTGGTTCTACTGTAAGGAAACATTCAGA  1087

seq1  CATGCCTATTTGTCCAGGGCCATCAAGGAGAAGGTCTCCGGCTCATCTGC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTATTTGTCCAGGGCCATCAAGGAGAAGGTCTCCGGCTCATCTGC  1137

seq1  AAGTTGTGGCTTGTCACAAGTTTAATAAGAAAGTCACAGCAAACTGTAAT  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTGGCTTGTCACAAGTTTAATAAGAAAGTCACAGCAAACTGTAAT  1187

seq1  AAGGAATTC  1201
      |||||||||
seq2  AAGGAATTC  1196

seq1: chr14_75085602_75086611
seq2: B6Ng01-199M07.g_65_1087

seq1  GAATTCTGTGCCTAAGCCTTGACTTTGTCTTTTCAAAATGGTATATTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGCCTAAGCCTTGACTTTGTCTTTTCAAAATGGTATATTAGT  50

seq1  TTGATTATAAATCTATGAGGGACTGATGCCTTGCTTTTACTTTAATGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTATAAATCTATGAGGGACTGATGCCTTGCTTTTACTTTAATGAGT  100

seq1  TTCTACAGAGAAAAATTTCAACTGTGTACTCTCACAAGGGATGAGACAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAGAGAAAAATTTCAACTGTGTACTCTCACAAGGGATGAGACAGT  150

seq1  ACTGGCAGGGGCCCAAGAATGTCTTGAGTCTTGTTCTCAGCCCACTGCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCAGGGGCCCAAGAATGTCTTGAGTCTTGTTCTCAGCCCACTGCGA  200

seq1  AATGCCTCAGTTTTCTAAGACAAAGCACAGGAAGGGACTACTTTCATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTCAGTTTTCTAAGACAAAGCACAGGAAGGGACTACTTTCATCTA  250

seq1  CCCCTTTGTCCTCAACTCACATCACATCATTGCTTCCCCCATTGGATGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTGTCCTCAACTCACATCACATCATTGCTTCCCCCATTGGATGCT  300

seq1  AGGAAGCAGGTCCCTTATAAGAAGGTCTAGGTGAGAGCAGGTGGGATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCAGGTCCCTTATAAGAAGGTCTAGGTGAGAGCAGGTGGGATCAG  350

seq1  AAGGCAGCATAAGTTCTAGCATTCAGTGCCATTTCAGACCTTTGATACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGCATAAGTTCTAGCATTCAGTGCCATTTCAGACCTTTGATACCT  400

seq1  CTTATTTTTGGAGAGCCTACTTACATATATATAAATGTGTTATGCTAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTTGGAGAGCCTACTTACATATATATAAATGTGTTATGCTAAAT  450

seq1  AACTTAGATGTTTAACTATTAGGCATGTCCAATGAATAGGAACATTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGATGTTTAACTATTAGGCATGTCCAATGAATAGGAACATTTTAA  500

seq1  CAGATATTTAAATGTATTAATTCTGAGATTGCAAATTGTCATATTTTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATTTAAATGTATTAATTCTGAGATTGCAAATTGTCATATTTTGGA  550

seq1  TAATACATTTTTCCACACTTAAAATTCTCATAGATTCCTACCTGCCTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACATTTTTCCACACTTAAAATTCTCATAGATTCCTACCTGCCTGTC  600

seq1  TGCCACCTTCATTAGGGAGGGTAATGTGGGGATTCTACCTATGTTTACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCTTCATTAGGGAGGGTAATGTGGGGATTCTACCTATGTTTACAT  650

seq1  GTTTGTTGGCTACATGGAATGAAGGGCATTCTAAAAGCATTAAAAAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTGGCTACATGGAATGAAGGGCATTCTAAAAGCATTAAAAAATAA  700

seq1  ATAAAAAGCAAAGAAAAATGTCTCTATTTGGGTATTCCTTCCCCATTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGCAAAGAAAAATGTCTCTATTTGGGTATTCCTTCCCCATTTTC  750

seq1  TCACTCCCCGAGGAGCTGCAAACTGAAAGCGACATGACCATATATGGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCCCGAGGAGCTGCAAACTGAAAGCGACATGACCATATATGGTTC  800

seq1  CAAAGAGATGTCTACAGAGATCTCTTTGCTAAAAGACATACTAGA-TTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAAAGAGATGTCTACAGAGATCTCTTTGCTAAAAGACATACTAGATTTAA  850

seq1  GTCCTGTGAAATTTTTGTTTCGAAGAT-CATAATG-TTTATCAGACTGTC  897
      ||||||||||||||||||||||||||| ||||||| ||||||||||||||
seq2  GTCCTGTGAAATTTTTGTTTCGAAGATCCATAATGTTTTATCAGACTGTC  900

seq1  TGTA-TTTTAGTC-TGTA-TTTGT-GTAGGTGTCCCTGAGTTTGACCAG-  942
      |||| |||||||| |||| ||||| ||||||||||||||  |||||||| 
seq2  TGTATTTTTAGTCTTGTATTTTGTAGTAGGTGTCCCTGAAGTTGACCAGC  950

seq1  CCTAC-AGTATCCC-TTCTGAATGATAGTGCA-GGGGTGTATCAACTTCC  989
      ||||| |||||||| ||||||||||||  ||| |||||| ||||  | ||
seq2  CCTACAAGTATCCCTTTCTGAATGATATGGCAGGGGGTGAATCACTTCCC  1000

seq1  TGGGTTT-GGTGCAGC-ATGGTT  1010
      ||||||| |||||||| ||||||
seq2  TGGGTTTGGGTGCAGCTATGGTT  1023