BAC Information

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BAC

Clone NameB6Ng01-200B16
Chromosome14 (Build37)
Map Location 17,693,548 - 17,817,970
singlet/doubletdoublet
Overlap geneTpi-rs9
Upstream geneLOC667205, 1700062C10Rik, LOC667209, EG435389, Oxsm, Ngly1, Top2b, Rarb
Downstream geneThrb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200B16.bB6Ng01-200B16.g
ACCGA021257GA021258
length1,0981,121
definitionB6Ng01-200B16.b B6Ng01-200B16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,693,548 - 17,694,640)(17,816,866 - 17,817,970)
sequence
gaattccatagtttttcctcccaggcatggctcaggaccgaaagtgggta
gccaagattagaagggagggtgtggatacagcttactacacagttatctg
tgtataacgaacagagatgcagctaggatgcactcacaggtattatcttc
cattgtaaatacaaagtcacgtttaaatccaacaacaatgagttccaaat
atctaacatgattcaacctttagccccaacatggaaagcaagatttttct
attgaaaccaaaactccttttcttcctttaaattccaccgagataatttt
tttgaaatcactgtaaaatatcaacccctgaaatatacataatgttgtat
atttgcattccatgattactggatttaaatctaagaataaggaggccaaa
atcacatcctttactgaagatttcctgataagcagaacacacatcctgta
atatcaaactacatcttgtgtgagaaattataaacattaaaactgcctta
agaattccttgaattttaaggttttagagcttgttttccttagctgcatg
aacctaatgtttgctcaagcccaacttagccacaatgagaaatcttttga
aataagagacatagtcagagaaaatagttggtctcattaactggcctgaa
tgatggcccaagatccatagcccagcctctgggagtacagtctgagcagc
tagggaggacattgctacacacccgtctactgctccttgcctctcatctc
ttctccttgcttctcatcttcttcttcaactttggttctttgcattctgg
tataaatcttgatatttgatattattaactctgttagcccagcgcctcca
aacagaagaccctgcacttcctttcaaataactgtcgtgcatccccctcc
ctacattttcttagcccagcagcactcttccaagacttgtctagctctac
actcagggcatgtttccctgcaaccttatggttttacttttctcattact
atgacataatccctgaaaaaaaatcaacttggaaaggaaaaggtttattt
tggctagctgttttgaggttaaggtacacccacagtagagaaggcatg

gaattcttagttcctctagagggtcatgaaccatgggaccttcagtcatt
tctgtgctgactaccctcgtgagtataaagtagtatcctggtagatttaa
ctgtgttttgaaagtagaagattaggaaagtgtcccctaaaggactgata
cttaaaagaaacaaagtactctgaaagagaagagggaatcctacagacct
cttgacagcagctggagtaacatgaggcccatgtgcagatccaggggagc
tatgagcctttccttcatctcaggacaagaaagaaacattggataccaag
aacaagagcagatctgagttccacaggctaatggagggatgggagatggg
aatggtcaggaggtccgattgctccatatcttaggtaaataggcttccct
tccaggctgtctgtctgcctgtctttctgggcctggatatctataataac
ctatttctgaagacttgaggtatataatggacactgtatctacacacagg
aagcatggccaccatctcagccatgcaccaagaaaggtaactcagcatta
ccaagaattcggatgggacagggttcactgctgcacaatattaagctcat
gacttctatatttgcttctgtaattgctgaagattgaataaaagctgact
ttgtcttcctgttgattaaatgaggacctggatctaaaagcatttgctcc
tgagaacacttaggtcccattaatgcagctgaagagtcatgtcatagaag
ggcatgaggagacaggactctgacacagaaagcctacctacctctatatc
ttgccttaccagagttgtgcttgtagcttctatgtcactcttagggactg
aggtaaacctgacatcatagctagttattaaacatttgaatatagaagag
ttgcatttaccatgtttgtgggataaagacagctatggtagagcagagtg
gctgttctttaacgtgatactatttaagtgaacctcaattatgttgaaca
ctattattcctaaaggtcattaaaatgaccatgtagctatccttagaaaa
atttgtgaagagaaaatttaaaaaattgaatccaaggagaaatctctctc
tagattgttagtgttttgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_17693548_17694640
seq2: B6Ng01-200B16.b_44_1141

seq1  GAATTCCATAGTTTTTCCTCCCAGGCATGGCTCAGGACCGAAAGTGGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAGTTTTTCCTCCCAGGCATGGCTCAGGACCGAAAGTGGGTA  50

seq1  GCCAAGATTAGAAGGGAGGGTGTGGATACAGCTTACTACACAGTTATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGATTAGAAGGGAGGGTGTGGATACAGCTTACTACACAGTTATCTG  100

seq1  TGTATAACGAACAGAGATGCAGCTAGGATGCACTCACAGGTATTATCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAACGAACAGAGATGCAGCTAGGATGCACTCACAGGTATTATCTTC  150

seq1  CATTGTAAATACAAAGTCACGTTTAAATCCAACAACAATGAGTTCCAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTAAATACAAAGTCACGTTTAAATCCAACAACAATGAGTTCCAAAT  200

seq1  ATCTAACATGATTCAACCTTTAGCCCCAACATGGAAAGCAAGATTTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAACATGATTCAACCTTTAGCCCCAACATGGAAAGCAAGATTTTTCT  250

seq1  ATTGAAACCAAAACTCCTTTTCTTCCTTTAAATTCCACCGAGATAATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAACCAAAACTCCTTTTCTTCCTTTAAATTCCACCGAGATAATTTT  300

seq1  TTTGAAATCACTGTAAAATATCAACCCCTGAAATATACATAATGTTGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATCACTGTAAAATATCAACCCCTGAAATATACATAATGTTGTAT  350

seq1  ATTTGCATTCCATGATTACTGGATTTAAATCTAAGAATAAGGAGGCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCATTCCATGATTACTGGATTTAAATCTAAGAATAAGGAGGCCAAA  400

seq1  ATCACATCCTTTACTGAAGATTTCCTGATAAGCAGAACACACATCCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATCCTTTACTGAAGATTTCCTGATAAGCAGAACACACATCCTGTA  450

seq1  ATATCAAACTACATCTTGTGTGAGAAATTATAAACATTAAAACTGCCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAACTACATCTTGTGTGAGAAATTATAAACATTAAAACTGCCTTA  500

seq1  AGAATTCCTTGAATTTTAAGGTTTTAGAGCTTGTTTTCCTTAGCTGCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCCTTGAATTTTAAGGTTTTAGAGCTTGTTTTCCTTAGCTGCATG  550

seq1  AACCTAATGTTTGCTCAAGCCCAACTTAGCCACAATGAGAAATCTTTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAATGTTTGCTCAAGCCCAACTTAGCCACAATGAGAAATCTTTTGA  600

seq1  AATAAGAGACATAGTCAGAGAAAATAGTTGGTCTCATTAACTGGCCTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAGACATAGTCAGAGAAAATAGTTGGTCTCATTAACTGGCCTGAA  650

seq1  TGATGGCCCAAGATCCATAGCCCAGCCTCTGGGAGTACAGTCTGAGCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCCCAAGATCCATAGCCCAGCCTCTGGGAGTACAGTCTGAGCAGC  700

seq1  TAGGGAGGACATTGCTACACACCCGTCTACTGCTCCTTGCCTCTCATCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGGACATTGCTACACACCCGTCTACTGCTCCTTGCCTCTCATCTC  750

seq1  TTCTCCTTGCTTCTCATCTTCTTCTTCAACTTTGGTTCTTTGCATTCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTGCTTCTCATCTTCTTCTTCAACTTTGGTTCTTTGCATTCTGG  800

seq1  TATAAATCTTGATATTTGATATTATTAACTCTGTTAGCCCAGCGCCTCC-  849
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TATAAATCTTGATATTTGATATTATTAACTCTGTTAGCCCAGCGCCTCCA  850

seq1  AACAGAAGACCCTGCACTTCCTTTCAAATAACTGTCGTGCATCCCCCTCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAGACCCTGCACTTCCTTTCAAATAACTGTCGTGCATCCCCCTCC  900

seq1  CTACATTTTCTTAGCCCAGCAGCACTCTTCCAAGACTTGTCTAGCTCTAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTTCTTAGCCCAGCAGCACTCTTCCAAGACTTGTCTAGCTCTAC  950

seq1  ACTCAGGGCATGTTTCCCTGCAACCTTATGGTTTTACTTTTCTCATTACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGGCATGTTTCCCTGCAACCTTATGGTTTTACTTTTCTCATTACT  1000

seq1  ATGACATAATCCCTG-ACAAAAATCAACTTGGAAAGG-AAAGGTTTATTT  1047
      ||||||||||||||| | ||||||||||||||||||| ||||||||||||
seq2  ATGACATAATCCCTGAAAAAAAATCAACTTGGAAAGGAAAAGGTTTATTT  1050

seq1  TGGCTAGTTG-TTTGAGGGTAAAGTACA-CCACAGTAGAGAAGGCATG  1093
      ||||||| || ||||||| ||| ||||| |||||||||||||||||||
seq2  TGGCTAGCTGTTTTGAGGTTAAGGTACACCCACAGTAGAGAAGGCATG  1098


seq1: chr14_17816866_17817970
seq2: B6Ng01-200B16.g_69_1189 (reverse)

seq1  TCACAAAACACTAAC-ATCT--AGAGAGATTTCTCCTTGTATCATTTTTT  47
      ||||||||||||||| ||||  ||||||||||||||||| ||    ||||
seq2  TCACAAAACACTAACAATCTAGAGAGAGATTTCTCCTTGGATTCAATTTT  50

seq1  TTAAATTTTCTCTCAACAAATTTTTCTA--GATTGCTACATTGTCATTTT  95
      |||||||||||||  |||||||||||||  ||| ||||||| ||||||||
seq2  TTAAATTTTCTCTTCACAAATTTTTCTAAGGATAGCTACATGGTCATTTT  100

seq1  AATGA-CTTTAG--ATAATAGTGTTC-ACAT-ATTGAGGTTTCAC-TAAA  139
      ||||| ||||||  |||||||||||| |||| ||||||| ||||| ||||
seq2  AATGACCTTTAGGAATAATAGTGTTCAACATAATTGAGG-TTCACTTAAA  149

seq1  TAGTATCACG-TAAAGAACAGCCACTCTGCTCT-CCATAGCTGTC-TTAT  186
      |||||||||| |||||||||||||||||||||| ||||||||||| ||||
seq2  TAGTATCACGTTAAAGAACAGCCACTCTGCTCTACCATAGCTGTCTTTAT  199

seq1  -CCACAAACATGGT-AATGCAACTCTTCTATATTC-AATG-TTAATAACT  232
       ||||||||||||| |||||||||||||||||||| |||| |||||||||
seq2  CCCACAAACATGGTAAATGCAACTCTTCTATATTCAAATGTTTAATAACT  249

seq1  AGCTATGATGTCAGGTTTACCTCAGTCCCTAAGAGTGACATAGAAGCTAC  282
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGATGTCAGGTTTACCTCAGTCCCTAAGAGTGACATAGAAGCTAC  299

seq1  AAGCACAAACTCTGGTAAGGCAAGATATAGAGGTAGGTAGGCTTTCTGTG  332
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAC-AACTCTGGTAAGGCAAGATATAGAGGTAGGTAGGCTTTCTGTG  348

seq1  TCAGAGTCCTGTCTCCTCATGCCCTTCTATGACATGACTCTTCAGCTGCA  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTCCTGTCTCCTCATGCCCTTCTATGACATGACTCTTCAGCTGCA  398

seq1  TTAATGGGACCTAAGTGTTCTCAGGAGCAAATGCTTTTAGATCCAGGTCC  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGGACCTAAGTGTTCTCAGGAGCAAATGCTTTTAGATCCAGGTCC  448

seq1  TCATTTAATCAACAGGAAGACAAAGTCAGCTTTTATTCAATCTTCAGCAA  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAATCAACAGGAAGACAAAGTCAGCTTTTATTCAATCTTCAGCAA  498

seq1  TTACAGAAGCAAATATAGAAGTCATGAGCTTAATATTGTGCAGCAGTGAA  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAAGCAAATATAGAAGTCATGAGCTTAATATTGTGCAGCAGTGAA  548

seq1  CCCTGTCCCATCCGAATTCTTGGTAATGCTGAGTTACCTTTCTTGGTGCA  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCCCATCCGAATTCTTGGTAATGCTGAGTTACCTTTCTTGGTGCA  598

seq1  TGGCTGAGATGGTGGCCATGCTTCCTGTGTGTAGATACAGTGTCCATTAT  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAGATGGTGGCCATGCTTCCTGTGTGTAGATACAGTGTCCATTAT  648

seq1  ATACCTCAAGTCTTCAGAAATAGGTTATTATAGATATCCAGGCCCAGAAA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTCAAGTCTTCAGAAATAGGTTATTATAGATATCCAGGCCCAGAAA  698

seq1  GACAGGCAGACAGACAGCCTGGAAGGGAAGCCTATTTACCTAAGATATGG  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGCAGACAGACAGCCTGGAAGGGAAGCCTATTTACCTAAGATATGG  748

seq1  AGCAATCGGACCTCCTGACCATTCCCATCTCCCATCCCTCCATTAGCCTG  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCGGACCTCCTGACCATTCCCATCTCCCATCCCTCCATTAGCCTG  798

seq1  TGGAACTCAGATCTGCTCTTGTTCTTGGTATCCAATGTTTCTTTCTTGTC  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCAGATCTGCTCTTGTTCTTGGTATCCAATGTTTCTTTCTTGTC  848

seq1  CTGAGATGAAGGAAAGGCTCATAGCTCCCCTGGATCTGCACATGGGCCTC  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATGAAGGAAAGGCTCATAGCTCCCCTGGATCTGCACATGGGCCTC  898

seq1  ATGTTACTCCAGCTGCTGTCAAGAGGTCTGTAGGATTCCCTCTTCTCTTT  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACTCCAGCTGCTGTCAAGAGGTCTGTAGGATTCCCTCTTCTCTTT  948

seq1  CAGAGTACTTTGTTTCTTTTAAGTATCAGTCCTTTAGGGGACACTTTCCT  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTACTTTGTTTCTTTTAAGTATCAGTCCTTTAGGGGACACTTTCCT  998

seq1  AATCTTCTACTTTCAAAACACAGTTAAATCTACCAGGATACTACTTTATA  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCTACTTTCAAAACACAGTTAAATCTACCAGGATACTACTTTATA  1048

seq1  CTCACGAGGGTAGTCAGCACAGAAATGACTGAAGGTCCCATGGTTCATGA  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGAGGGTAGTCAGCACAGAAATGACTGAAGGTCCCATGGTTCATGA  1098

seq1  CCCTCTAGAGGAACTAAGAATTC  1105
      |||||||||||||||||||||||
seq2  CCCTCTAGAGGAACTAAGAATTC  1121


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