BAC Information

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BAC

Clone NameB6Ng01-201K15
Chromosome14 (Build37)
Map Location 44,066,828 - 44,200,200
singlet/doubletdoublet
Overlap geneLOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342
Upstream geneLOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik
Downstream geneLOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402, BC061237, LOC434476
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201K15.bB6Ng01-201K15.g
ACCGA022374GA022375
length1,1131,144
definitionB6Ng01-201K15.b B6Ng01-201K15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,066,828 - 44,067,946)(44,199,086 - 44,200,200)
sequence
gaattcatagaagataatgattcctacaggtgagtcccagacacagctga
gacccagcactaggcagggaatgcttgtggccttctaggactttgtacaa
aagtgagagctctagttctatactctctgtttcttaataggagccctccc
ttgaggcatgggtcttggatttgtacctcttagactcaggtttcctaagt
gtgaatattgtccaagaccctccagtctttattcttccaaattcaggatc
ttctgcatagaaaccatttccaccatgctgggaatctcaagcaaccctga
acttctagggttctgacagcagattacaagatctgggatccatgacaaaa
atggaaagagtttataccttttgggtcttctctcctccctaagagggcat
tgccctctccatactgatggttttctggtactacacacatatgagcaacc
atgaggaagttttcctcttctgtgatgtatatggaacactcttggtgtca
gggttttcagaaatattttgagtcttgttgcatgtggctggtctctggat
ttgacctgcctctatttggtacttatggatatacagtggtctctagtctc
gggctgtctggggatcagagaccttgcaggcatcataatatttggaagag
tggcaggcaaatcaaagctagctgggaatcaacatttatgttttgtatgt
ttgtggttcagcatcaggcacacccacctcctgaaagaatgcaatcaatt
gaagaaaaaagtaaggatgttgctgaatgagaacagaaaactgctggtag
agcaggctgaccaggaggcatcctttggtgaagaaaagagttctgtgatg
agaccagcaagaacatacatcccaagtgcaaagcagcagcaggtaggatg
atgtgtatcagaggcagattgccctcatggctaaccataaacatagacaa
tcaaatgtaacagttcaccaacttatccaggcactcactctgtctcctca
agtgtttatttagtgatcatctacaaggctttctctggagtagactttac
aagaactgcatgtttagccaggccaattttctgctgtctaaatcttgcca
gttcactagggga
gaattcttaagattgcatggctggtgttgtgggtatctggtggtagtcag
ctgactgtgcgccctagctacccaggtgctgctcggaccataaggggctt
gtgcccctactcagaccgggtttttgcttccctgactaatgcagtctcaa
gtcccacgcgattggactggtgcagatgctgtgttccactcaccagaagt
cttaagattgcttggcgggtgttgtgggtagctggtggtagtcagatgac
tgtgcgccctagctaccctgtgctgatcggaccggaaggggctcaccttt
aaattctcttaagttagtatgtaaataatgatatcattgtgtaacgatga
tttaatttttcacaccaagaaatagaatgttgctttctttttcttggacc
taaatggttaaatggaaccaatgatggaaatcttctgtcaaagttccctc
tctaaagaaaattcttttgattcctgactaaggaacagagtgtggtgtgt
gtttctggttgaggcctcttaacaagttaaggaactaaactagatttcct
ttttagaaacccataaaagtgtgccatcttgtatcaaaagtttcttctga
gtgtgatgagaacaacgtttttttttttccccacagagatattgtcaaga
ctgaagcttctgtgtgcaaagcagagatctgctctacctttcccaactca
gtccatgactcagtttatgttcaaataatgtatgaccttattagtgatgc
aacgtagatgaatacctcctgtattctcctcatgggaatagtctagacca
gagtgagattatttttctctttctgactctctctttgtcccttaattatg
tttctgtttgcgtctgtctctctgtctctgtctatctctgtctctctgtc
cctgtctctctctctctctctcatggcggttttgagatagtgtttctgtg
tttattccaagctggtctctacctcactctattacaccatgctgtccttg
ggagattcaggtaaattattgcacccacaaatggctactggcctgattct
aagaaatcattatatacctttaaggtttagtgagttcattgttaaacagt
gaactgaagcctttgttcatttaatctagaataggcgaattaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_44066828_44067946
seq2: B6Ng01-201K15.b_42_1154

seq1  GAATTCATAGAAGATAATGATTCCTACAGGTGAGTCCCAGACACAGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGAAGATAATGATTCCTACAGGTGAGTCCCAGACACAGCTGA  50

seq1  GACCCAGCACTAGGCAGGGAATGCTTGTGGCCTTCTAGGACTTTGTACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGCACTAGGCAGGGAATGCTTGTGGCCTTCTAGGACTTTGTACAA  100

seq1  AAGTGAGAGCTCTAGTTCTATACTCTCTGTTTCTTAATAGGAGCCCTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGAGCTCTAGTTCTATACTCTCTGTTTCTTAATAGGAGCCCTCCC  150

seq1  TTGAGGCATGGGTCTTGGATTTGTACCTCTTAGACTCAGGTTTCCTAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCATGGGTCTTGGATTTGTACCTCTTAGACTCAGGTTTCCTAAGT  200

seq1  GTGAATATTGTCCAAGACCCTCCAGTCTTTATTCTTCCAAATTCAGGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATATTGTCCAAGACCCTCCAGTCTTTATTCTTCCAAATTCAGGATC  250

seq1  TTCTGCATAGAAACCATTTCCACCATGCTGGGAATCTCAAGCAACCCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCATAGAAACCATTTCCACCATGCTGGGAATCTCAAGCAACCCTGA  300

seq1  ACTTCTAGGGTTCTGACAGCAGATTACAAGATCTGGGATCCATGACAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTAGGGTTCTGACAGCAGATTACAAGATCTGGGATCCATGACAAAA  350

seq1  ATGGAAAGAGTTTATACCTTTTGGGTCTTCTCTCCTCCCTAAGAGGGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGAGTTTATACCTTTTGGGTCTTCTCTCCTCCCTAAGAGGGCAT  400

seq1  TGCCCTCTCCATACTGATGGTTTTCTGGTACTACACACATATGAGCAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCTCCATACTGATGGTTTTCTGGTACTACACACATATGAGCAACC  450

seq1  ATGAGGAAGTTTTCCTCTTCTGTGATGTATATGGAACACTCTTGGTGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAAGTTTTCCTCTTCTGTGATGTATATGGAACACTCTTGGTGTCA  500

seq1  GGGTTTTCAGAAATATTTTGAGTCTTGTTGCATGTGGCTGGTCTCTGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTCAGAAATATTTTGAGTCTTGTTGCATGTGGCTGGTCTCTGGAT  550

seq1  TTGACCTGCCTCTATTTGGTACTTATGGATATACAGTGGTCTCTAGTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTGCCTCTATTTGGTACTTATGGATATACAGTGGTCTCTAGTCTC  600

seq1  GGGCTGTCTGGGGATCAGAGACCTTGCAGGCATCATAATATTTGGAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTCTGGGGATCAGAGACCTTGCAGGCATCATAATATTTGGAAGAG  650

seq1  TGGCAGGCAAATCAAAGCTAGCTGGGAATCAACATTTATGTTTTGTATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGCAAATCAAAGCTAGCTGGGAATCAACATTTATGTTTTGTATGT  700

seq1  TTGTGGTTCAGCATCAGGCACACCCACCTCCTGAAAGAATGCAATCAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTTCAGCATCAGGCACACCCACCTCCTGAAAGAATGCAATCAATT  750

seq1  GAAGAAAAAAGTAAGGATGTTGCTGAATGAGAACAGAAAACTGCTGGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAAAGTAAGGATGTTGCTGAATGAGAACAGAAAACTGCTGGTAG  800

seq1  AGCAGGCTGACCAGGAGGCATCCTTTGGTGAAGAAAAGAGTTCTGTGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCTGACCAGGAGGCATCCTTTGGTGAAGAAAAGAGTTCTGTGATG  850

seq1  AGACCAGCAAGAACATACATCCCAAGTGCAAAGCAGCAGCAGGTAGGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGCAAGAACATACATCCCAAGTGCAAAGCAGCAGCAGGTAGGATG  900

seq1  ATGTGTATCAGAGGCAGATTGCCCTCATGGCTAACCATAAACATAGACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATCAGAGGCAGATTGCCCTCATGGCTAACCATAAACATAGACAA  950

seq1  TCAAATGTAACAGTCCACCAACTTATCCAGGCACTCACTTCTGTCTCCTC  1000
      |||||||||||||| ||||||||||||||||||||||| |||||||||| 
seq2  TCAAATGTAACAGTTCACCAACTTATCCAGGCACTCAC-TCTGTCTCCT-  998

seq1  CAAGTGTTTATTTAGGTGATCATCTACAAGGCTTTCTCTGGAGGTAGACT  1050
      |||||||||||||| ||||||||||||||||||||||||||| |||||| 
seq2  CAAGTGTTTATTTA-GTGATCATCTACAAGGCTTTCTCTGGA-GTAGAC-  1045

seq1  TTTACAAGAAACTGCATGTTTAGCAAGCCAATTTTTCTGCCCTGCTAAAA  1100
      |||||||| ||||||||||||||| || | | |||||||  |||   |||
seq2  TTTACAAG-AACTGCATGTTTAGCCAGGCCAATTTTCTG--CTGTCTAAA  1092

seq1  TCT--GCAGTTCACTAGGGGA  1119
      |||   |||||||||||||||
seq2  TCTTGCCAGTTCACTAGGGGA  1113

seq1: chr14_44199086_44200200
seq2: B6Ng01-201K15.g_86_1212 (reverse)

seq1  TCTAATCTCCCTA-TCTAGATTAAATGAACAAGGGCTCCAG-TCACTGTT  48
      ||||||   |||| |||||||||||||||||| |||| ||| ||||||||
seq2  TCTAATTCGCCTATTCTAGATTAAATGAACAAAGGCTTCAGTTCACTGTT  50

seq1  --ACAATGAACTTCCACTATA-CTTTAAGGTATAT-ATGATTTCTTAGAA  94
        ||||||||||  ||||| | ||| ||||||||| ||||||||||||||
seq2  TAACAATGAACT--CACTAAACCTTAAAGGTATATAATGATTTCTTAGAA  98

seq1  TCAGG-CAGTAGGCATTTGT-GGTGCATGATTTTACCTGAGTCTCCCAAG  142
      ||||| |||||| ||||||| ||||||  | ||||||||| |||||||||
seq2  TCAGGCCAGTAGCCATTTGTGGGTGCAATAATTTACCTGAATCTCCCAAG  148

seq1  GACAGCATGGTGT-ATAGAGTGAGGTAGAGACCAGCTTGGAATAAACACA  191
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GACAGCATGGTGTAATAGAGTGAGGTAGAGACCAGCTTGGAATAAACACA  198

seq1  GAAACACTATCTCAAAACCGCCAT--GAGAGAGAGAGAGTGACAGGGACA  239
      ||||||||||||||||||||||||  ||||||||||||| ||||||||||
seq2  GAAACACTATCTCAAAACCGCCATGAGAGAGAGAGAGAGAGACAGGGACA  248

seq1  GAGAGACAGACATAGACAGAGACAGAGAGACAGACGCAAACAGAAACATA  289
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACAGAGATAGACAGAGACAGAGAGACAGACGCAAACAGAAACATA  298

seq1  ATTAAGGGACAAAGAGAGAGTCAGAAAGAGAAAAATAATCTCACTCTGGT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGGACAAAGAGAGAGTCAGAAAGAGAAAAATAATCTCACTCTGGT  348

seq1  CTAGACTATTCCCATGAGGAGAATACAGGAGGTATTCATCTACCTTGCAT  389
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTAGACTATTCCCATGAGGAGAATACAGGAGGTATTCATCTACGTTGCAT  398

seq1  CACTAATAAGGTCATACATTATTTGAACATAAACTGAGTCATGAACTGAG  439
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CACTAATAAGGTCATACATTATTTGAACATAAACTGAGTCATGGACTGAG  448

seq1  TTGGGAAAGGTTGAGCAGATCTCTGCTTTGCACACAGAAGCGTCAGTCTT  489
      ||||||||||| ||||||||||||||||||||||||||||| ||||||||
seq2  TTGGGAAAGGTAGAGCAGATCTCTGCTTTGCACACAGAAGCTTCAGTCTT  498

seq1  GACAATATCTCTGT-GGGAAAAAAAAAAACGTTGTTCTCATCACACTCAG  538
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GACAATATCTCTGTGGGGAAAAAAAAAAACGTTGTTCTCATCACACTCAG  548

seq1  AAGAAACTTTTGATACAAGATGGCACACTTTTATGGGTTTCTAAAAAGGA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTTTTGATACAAGATGGCACACTTTTATGGGTTTCTAAAAAGGA  598

seq1  AATCTAGTTTAGTTCCTTAACTTGTTAAGAGGCCTCAACCAGAAACACAC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGTTTAGTTCCTTAACTTGTTAAGAGGCCTCAACCAGAAACACAC  648

seq1  ACCACACTCTGTTCCTTAGTCAGGAATCAAAAGAATTTTCTTTAGAGAGG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACTCTGTTCCTTAGTCAGGAATCAAAAGAATTTTCTTTAGAGAGG  698

seq1  GAACTTTGACAGAAGATTTCCATCATTGGTTCCATTTAACCATTTAGGTC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTGACAGAAGATTTCCATCATTGGTTCCATTTAACCATTTAGGTC  748

seq1  CAAGAAAAAGAAAGCAACATTCTATTTCTTGGTGTGAAAAATTAAATCAT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAAAGAAAGCAACATTCTATTTCTTGGTGTGAAAAATTAAATCAT  798

seq1  CTTTACACAATGATATCATTATTTACATACTAACTTAAGAGAATTTAAAG  838
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTACACAATGATATCATTATTTACATACTAACTTAAGAGAATTTAAAG  848

seq1  GTGAGCCCCTTCCGGTCCGATCAGCACAGGGTAGCTAGGGCGCACAGTCG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTGAGCCCCTTCCGGTCCGATCAGCACAGGGTAGCTAGGGCGCACAGTCA  898

seq1  TCTGACTACCACCAGCTACCCACAACACCTGCCAAGCGATCTTAAGACTT  938
      ||||||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  TCTGACTACCACCAGCTACCCACAACACCCGCCAAGCAATCTTAAGACTT  948

seq1  CTGTTGAGTGGAACACAGCCTCTGCTCCAATCCAAT--CGTGGGACTTGA  986
      ||| ||||||||||||||| ||||| ||| ||||||  ||||||||||||
seq2  CTGGTGAGTGGAACACAGCATCTGCACCAGTCCAATCGCGTGGGACTTGA  998

seq1  GACTGCATTAGTCAGGGAAGCAAAAACCCGGTCTGAGTAGGGGCACAAGC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCATTAGTCAGGGAAGCAAAAACCCGGTCTGAGTAGGGGCACAAGC  1048

seq1  CCCTTATGGTCCGAGCAGCACCTGGGTAGCTAGGGCGCACAGTTGGCTGA  1086
      |||||||||||||||||||||||||||||||||||||||||||  |||||
seq2  CCCTTATGGTCCGAGCAGCACCTGGGTAGCTAGGGCGCACAGTCAGCTGA  1098

seq1  CTACCACCAGATACCCACAACACCAGCCA  1115
      |||||||||||||||||||||||||||||
seq2  CTACCACCAGATACCCACAACACCAGCCA  1127