BAC Information

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BAC

Clone NameB6Ng01-201K23
Chromosome14 (Build37)
Map Location 44,066,828 - 44,200,200
singlet/doubletdoublet
Overlap geneLOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342
Upstream geneLOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik
Downstream geneLOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402, BC061237, LOC434476
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201K23.bB6Ng01-201K23.g
ACCGA022388GA022389
length1,1241,103
definitionB6Ng01-201K23.b B6Ng01-201K23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,066,828 - 44,067,950)(44,199,134 - 44,200,200)
sequence
gaattcatagaagataatgattcctacaggtgagtcccagacacagctga
gacccagcactaggcagggaatgcttgtggccttctaggactttgtacaa
aagtgagagctctagttctatactctctgtttcttaataggagccctccc
ttgaggcatgggtcttggatttgtacctcttagactcaggtttcctaagt
gtgaatattgtccaagaccctccagtctttattcttccaaattcaggatc
ttctgcatagaaaccatttccaccatgctgggaatctcaagcaaccctga
acttctagggttctgacagcagattacaagatctgggatccatgacaaaa
atggaaagagtttataccttttgggtcttctctcctccctaagagggcat
tgccctctccatactgatggttttctggtactacacacatatgagcaacc
atgaggaagttttcctcttctgtgatgtatatggaacactcttggtgtca
gggttttcagaaatattttgagtcttgttgcatgtggctggtctctggat
ttgacctgcctctatttggtacttatggatatacagtggtctctagtctc
gggctgtctggggatcagagaccttgcaggcatcataatatttggaagag
tggcaggcaaatcaaagctagctgggaatcaacatttatgttttgtatgt
ttgtggttcagcatcaggcacacccacctcctgaaagaatgcaatcaatt
gaagaaaaaagtaaggatgttgctgaatgagaacagaaaactgctggtag
agcaggctgaccaggaggcatcctttggtgaagaaaagagttctgtgatg
agaccagcaagaacatacatcctcaagtgcaaagcagcagcaggtaggat
gatgtgtatcagaggcagattgccctcatggctaaccataacatagacat
caaatgtaacagtccactacttatccagggcactcacttctgtctctcaa
gtgtttatttaggtggatcatctacaggccttctctggaggtaagacttt
aacaaggaatttgcatgtttagccagcaatttttctggccctgctataat
cgtgcagtcactagggggaagata
gaattcttaagattgcatggctggtgttgtgggtatctggtggtagtcag
ctgactgtgcgccctagctacccaggtgctgctcggaccataaggggctt
gtgcccctactcagaccgggtttttgcttccctgactaatgcagtctcaa
gtcccacgcgattggactggtgcagatgctgtgttccactcaccagaagt
cttaagattgcttggcgggtgttgtgggtagctggtggtagtcagatgac
tgtgcgccctagctaccctgtgctgatcggaccggaaggggctcaccttt
aaattctcttaagttagtatgtaaataatgatatcattgtgtaacgatga
tttaatttttcacaccaagaaatagaatgttgctttctttttcttggacc
taaatggttaaatggaaccaatgatggaaatcttctgtcaaagttccctc
tctaaagaaaattcttttgattcctgactaaggaacagagtgtggtgtgt
gtttctggttgaggcctcttaacaagttaaggaactaaactagatttcct
ttttagaaacccataaaagtgtgccatcttgtatcaaaagtttcttctga
gtgtgatgagaacaacgtttttttttttccccacagagatattgtcaaga
ctgaagcttctgtgtgcaaagcagagatctgctctacctttcccaactca
gtccatgactcagtttatgttcaaataatgtatgaccttattagtgatgc
aacgtagatgaatacctcctgtattctcctcatgggaatagtctagacca
gagtgagattatttttctctttctgactctctctttgtcccttaattatg
tttctgtttgcgtctgtctctctgtctctgtctatctctgtctctctgtc
ctgtctctctctctcttctctcatggcggttttgaaaatagtggtttctg
tgtttattccaagctggttctcttaccttcactctatacaacatgctgtc
ccttgggaagatcaggtaaaattatgcacccacaaatgcttactgctgat
tctaaagaaaatccaatatattcctttaaagttaaggtggaaaggttcat
tgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_44066828_44067950
seq2: B6Ng01-201K23.b_51_1174

seq1  GAATTCATAGAAGATAATGATTCCTACAGGTGAGTCCCAGACACAGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGAAGATAATGATTCCTACAGGTGAGTCCCAGACACAGCTGA  50

seq1  GACCCAGCACTAGGCAGGGAATGCTTGTGGCCTTCTAGGACTTTGTACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGCACTAGGCAGGGAATGCTTGTGGCCTTCTAGGACTTTGTACAA  100

seq1  AAGTGAGAGCTCTAGTTCTATACTCTCTGTTTCTTAATAGGAGCCCTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGAGCTCTAGTTCTATACTCTCTGTTTCTTAATAGGAGCCCTCCC  150

seq1  TTGAGGCATGGGTCTTGGATTTGTACCTCTTAGACTCAGGTTTCCTAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCATGGGTCTTGGATTTGTACCTCTTAGACTCAGGTTTCCTAAGT  200

seq1  GTGAATATTGTCCAAGACCCTCCAGTCTTTATTCTTCCAAATTCAGGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATATTGTCCAAGACCCTCCAGTCTTTATTCTTCCAAATTCAGGATC  250

seq1  TTCTGCATAGAAACCATTTCCACCATGCTGGGAATCTCAAGCAACCCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCATAGAAACCATTTCCACCATGCTGGGAATCTCAAGCAACCCTGA  300

seq1  ACTTCTAGGGTTCTGACAGCAGATTACAAGATCTGGGATCCATGACAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTAGGGTTCTGACAGCAGATTACAAGATCTGGGATCCATGACAAAA  350

seq1  ATGGAAAGAGTTTATACCTTTTGGGTCTTCTCTCCTCCCTAAGAGGGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGAGTTTATACCTTTTGGGTCTTCTCTCCTCCCTAAGAGGGCAT  400

seq1  TGCCCTCTCCATACTGATGGTTTTCTGGTACTACACACATATGAGCAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCTCCATACTGATGGTTTTCTGGTACTACACACATATGAGCAACC  450

seq1  ATGAGGAAGTTTTCCTCTTCTGTGATGTATATGGAACACTCTTGGTGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAAGTTTTCCTCTTCTGTGATGTATATGGAACACTCTTGGTGTCA  500

seq1  GGGTTTTCAGAAATATTTTGAGTCTTGTTGCATGTGGCTGGTCTCTGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTCAGAAATATTTTGAGTCTTGTTGCATGTGGCTGGTCTCTGGAT  550

seq1  TTGACCTGCCTCTATTTGGTACTTATGGATATACAGTGGTCTCTAGTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTGCCTCTATTTGGTACTTATGGATATACAGTGGTCTCTAGTCTC  600

seq1  GGGCTGTCTGGGGATCAGAGACCTTGCAGGCATCATAATATTTGGAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTCTGGGGATCAGAGACCTTGCAGGCATCATAATATTTGGAAGAG  650

seq1  TGGCAGGCAAATCAAAGCTAGCTGGGAATCAACATTTATGTTTTGTATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGCAAATCAAAGCTAGCTGGGAATCAACATTTATGTTTTGTATGT  700

seq1  TTGTGGTTCAGCATCAGGCACACCCACCTCCTGAAAGAATGCAATCAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTTCAGCATCAGGCACACCCACCTCCTGAAAGAATGCAATCAATT  750

seq1  GAAGAAAAAAGTAAGGATGTTGCTGAATGAGAACAGAAAACTGCTGGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAAAGTAAGGATGTTGCTGAATGAGAACAGAAAACTGCTGGTAG  800

seq1  AGCAGGCTGACCAGGAGGCATCCTTTGGTGAAGAAAAGAGTTCTGTGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCTGACCAGGAGGCATCCTTTGGTGAAGAAAAGAGTTCTGTGATG  850

seq1  AGACCAGCAAGAACATACATCC-CAAGTGCAAAGCAGCAGCAGGTAGGAT  899
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGACCAGCAAGAACATACATCCTCAAGTGCAAAGCAGCAGCAGGTAGGAT  900

seq1  GATGTGTATCAGAGGCAGATTGCCCTCATGGCTAACCATAAACATAGACA  949
      ||||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  GATGTGTATCAGAGGCAGATTGCCCTCATGGCTAACCAT-AACATAGAC-  948

seq1  ATCAAATGTAACAGTCCACCAACTTATCCA-GGCACTCACTTCTGTCTCC  998
      |||||||||||||||||| | ||||||||| |||||||||||||||||| 
seq2  ATCAAATGTAACAGTCCA-CTACTTATCCAGGGCACTCACTTCTGTCTC-  996

seq1  TCCAAGTGTTTATTTAGGT-GATCATCTACAAGGCTTTCTCTGGAGGT-A  1046
        ||||||||||||||||| |||||||||| |||| |||||||||||| |
seq2  -TCAAGTGTTTATTTAGGTGGATCATCTAC-AGGCCTTCTCTGGAGGTAA  1044

seq1  GACTTTTACAA-GAAACTGCATGTTTAGCAAGCCAATTTTTCT-GCCCTG  1094
      |||||| |||| |||  |||||||||||| || |||||||||| ||||||
seq2  GACTTTAACAAGGAATTTGCATGTTTAGCCAG-CAATTTTTCTGGCCCTG  1093

seq1  CTAAAATC-TGCAGTTCACTAGGGG--AGATA  1123
      ||| |||| ||||| ||||||||||  |||||
seq2  CTATAATCGTGCAG-TCACTAGGGGGAAGATA  1124

seq1: chr14_44199134_44200200
seq2: B6Ng01-201K23.g_81_1166 (reverse)

seq1  ACAATGAAC--TTCCA-CTATACTTT-AAGGTATATAT--GATTT--CTT  42
      |||||||||  ||||| ||  ||||| |||| ||||||  |||||   ||
seq2  ACAATGAACCTTTCCACCTTAACTTTAAAGGAATATATTGGATTTTCTTT  50

seq1  AGAATCAGGCAGTAGGCATTTGT-GGTGCATGATTTTACCTGAGTCTCCC  91
      ||||||| |||||| |||||||| ||||||| |||||||||||   ||||
seq2  AGAATCA-GCAGTAAGCATTTGTGGGTGCATAATTTTACCTGATCTTCCC  99

seq1  AA-GGACAGCATGGTGTATAGAGTG-AGGT-AGAG-ACCAGCTTGGAATA  137
      || |||||||||| ||||||||||| |||| |||| ||||||||||||||
seq2  AAGGGACAGCATGTTGTATAGAGTGAAGGTAAGAGAACCAGCTTGGAATA  149

seq1  AACACAGAAA-CACTA-TCTCAAAACCGCCATGAG---AGAGAGAGAGTG  182
      |||||||||| ||||| | ||||||||||||||||   |||||||||| |
seq2  AACACAGAAACCACTATTTTCAAAACCGCCATGAGAGAAGAGAGAGAGAG  199

seq1  ACAGGGACAGAGAGACAGACATAGACAGAGACAGAGAGACAGACGCAAAC  232
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACA-GGACAGAGAGACAGAGATAGACAGAGACAGAGAGACAGACGCAAAC  248

seq1  AGAAACATAATTAAGGGACAAAGAGAGAGTCAGAAAGAGAAAAATAATCT  282
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATAATTAAGGGACAAAGAGAGAGTCAGAAAGAGAAAAATAATCT  298

seq1  CACTCTGGTCTAGACTATTCCCATGAGGAGAATACAGGAGGTATTCATCT  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGGTCTAGACTATTCCCATGAGGAGAATACAGGAGGTATTCATCT  348

seq1  ACCTTGCATCACTAATAAGGTCATACATTATTTGAACATAAACTGAGTCA  382
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTGCATCACTAATAAGGTCATACATTATTTGAACATAAACTGAGTCA  398

seq1  TGAACTGAGTTGGGAAAGGTTGAGCAGATCTCTGCTTTGCACACAGAAGC  432
      || ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGGACTGAGTTGGGAAAGGTAGAGCAGATCTCTGCTTTGCACACAGAAGC  448

seq1  GTCAGTCTTGACAATATCTCTGT-GGGAAAAAAAAAAACGTTGTTCTCAT  481
       |||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTCAGTCTTGACAATATCTCTGTGGGGAAAAAAAAAAACGTTGTTCTCAT  498

seq1  CACACTCAGAAGAAACTTTTGATACAAGATGGCACACTTTTATGGGTTTC  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCAGAAGAAACTTTTGATACAAGATGGCACACTTTTATGGGTTTC  548

seq1  TAAAAAGGAAATCTAGTTTAGTTCCTTAACTTGTTAAGAGGCCTCAACCA  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGGAAATCTAGTTTAGTTCCTTAACTTGTTAAGAGGCCTCAACCA  598

seq1  GAAACACACACCACACTCTGTTCCTTAGTCAGGAATCAAAAGAATTTTCT  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACACACCACACTCTGTTCCTTAGTCAGGAATCAAAAGAATTTTCT  648

seq1  TTAGAGAGGGAACTTTGACAGAAGATTTCCATCATTGGTTCCATTTAACC  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAGGGAACTTTGACAGAAGATTTCCATCATTGGTTCCATTTAACC  698

seq1  ATTTAGGTCCAAGAAAAAGAAAGCAACATTCTATTTCTTGGTGTGAAAAA  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGTCCAAGAAAAAGAAAGCAACATTCTATTTCTTGGTGTGAAAAA  748

seq1  TTAAATCATCTTTACACAATGATATCATTATTTACATACTAACTTAAGAG  781
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCATCGTTACACAATGATATCATTATTTACATACTAACTTAAGAG  798

seq1  AATTTAAAGGTGAGCCCCTTCCGGTCCGATCAGCACAGGGTAGCTAGGGC  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAGGTGAGCCCCTTCCGGTCCGATCAGCACAGGGTAGCTAGGGC  848

seq1  GCACAGTCGTCTGACTACCACCAGCTACCCACAACACCTGCCAAGCGATC  881
      |||||||| ||||||||||||||||||||||||||||| ||||||| |||
seq2  GCACAGTCATCTGACTACCACCAGCTACCCACAACACCCGCCAAGCAATC  898

seq1  TTAAGACTTCTGTTGAGTGGAACACAGCCTCTGCTCCAATCCAAT--CGT  929
      |||||||||||| ||||||||||||||| ||||| ||| ||||||  |||
seq2  TTAAGACTTCTGGTGAGTGGAACACAGCATCTGCACCAGTCCAATCGCGT  948

seq1  GGGACTTGAGACTGCATTAGTCAGGGAAGCAAAAACCCGGTCTGAGTAGG  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTGAGACTGCATTAGTCAGGGAAGCAAAAACCCGGTCTGAGTAGG  998

seq1  GGCACAAGCCCCTTATGGTCCGAGCAGCACCTGGGTAGCTAGGGCGCACA  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAAGCCCCTTATGGTCCGAGCAGCACCTGGGTAGCTAGGGCGCACA  1048

seq1  GTTGGCTGACTACCACCAGATACCCACAACACCAGCCA  1067
      ||  ||||||||||||||||||||||||||||||||||
seq2  GTCAGCTGACTACCACCAGATACCCACAACACCAGCCA  1086