BAC Information

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BAC

Clone NameB6Ng01-202F10
Chromosome14 (Build37)
Map Location 20,527,848 - 20,661,035
singlet/doubletdoublet
Overlap geneNid2, 2700060E02Rik, LOC100039534
Upstream geneUbe2e2, LOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855
Downstream geneGng2, 1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202F10.bB6Ng01-202F10.g
ACCGA022855GA022856
length4401,173
definitionB6Ng01-202F10.b B6Ng01-202F10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,527,848 - 20,528,293)(20,659,855 - 20,661,035)
sequence
ttaacttaaaactgagttctgacccatcttcttaggagccgacctctgtc
atagcagcctttcaaacatgatgtagaagcgatattcatcttactgggcc
cgtagacatgagaaggtatgtctccagttctgaaaatgagcagaacttat
gttgtatcttacaaacacaaggggcagagaccagatttcatgactattac
tagaaatctcagacaatggatgaatcgcctaaagcatcacttgagtcaga
aagccaagtatctaaaagccaagtagctaaacccttagcatttatctcag
aatactcggggcaacctaagtgggctgcaagagcccccaggtcttggcct
gtgtggggggcaatggtccagctccggctccagccaaaaacaatctaatg
agcaccttttgttctctgggggctgggggtgggggtgggg
gaattcaagaacacccagaaaagatccctagactcatttcagattttaat
taatcaaatttattaaagccaccagcagggtcacccacagtctttggccc
aaatcagagatatgctatccagaggcaggtgaaagaaggtcttttaaaga
tgaaacccagaagagcttttcctctctgctaagattagatggtcaaggtg
acttcaaaatagtccttgaatgtctgaatgggcaggttatagaaaccaaa
atcagcaattattcatatcataacaagcagatggccatagttgtacattt
ctgggcagagggttaaggagtcagggttcccaagaatttattttctagga
gcttgagtgggggaaaaacagctattaggtaccaagatggatgcctagca
tgaacatggagtttcattagctatcacaatggtacctaattttcaaagaa
tacctctgcccaaaaggagaaagagcagtccgagaccaccacaaaggagt
gagtcaccacctgcctgtgactccctgtattgccatcattacattggtaa
atttggtttgtttgtttgtttgagggtcattcccttggatacagaacagt
gcagtatgagccgtagggcctcagagtgagctgactggaatgcagtcagc
ataaaccttgcttgccttcgtagagctcagcagcagccacggcattttgc
ctgtcctctgctgtagagtctcagttattaacttttaccttgatggactg
agatgtattcatccctgaaaagccctctagtttttggagattttcttatg
ggtgtccagagctgactgagtgacaaaagccaaattttacactctaactt
tttttttttacgctaatgaataaagagatgtaagatctgaaggtttcttc
caatcttcaagaaatgccccaggagactcttctgggctggaggagcctca
gtagtttaagacaaattagtgggtggcaagctgcaccctgaattccagtc
atagattctggtgacagtgtccacagcctgggactgcatatgtattgggg
tccaattggatggagagactggcttcaatcgagtagctttttaaaggcat
tcatccagcaggcctgaggccccccccgaaatagacttatctcaattcga
atctatgacatgattcccctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_20527848_20528293
seq2: B6Ng01-202F10.b_48_493

seq1  GAATTCTTAACTTAAAACTGAGTTCTGACCCATCTTCTTAGGAGCCGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAACTTAAAACTGAGTTCTGACCCATCTTCTTAGGAGCCGACC  50

seq1  TCTGTCATAGCAGCCTTTCAAACATGATGTAGAAGCGATATTCATCTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCATAGCAGCCTTTCAAACATGATGTAGAAGCGATATTCATCTTAC  100

seq1  TGGGCCCGTAGACATGAGAAGGTATGTCTCCAGTTCTGAAAATGAGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCCGTAGACATGAGAAGGTATGTCTCCAGTTCTGAAAATGAGCAGA  150

seq1  ACTTATGTTGTATCTTACAAACACAAGGGGCAGAGACCAGATTTCATGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGTTGTATCTTACAAACACAAGGGGCAGAGACCAGATTTCATGAC  200

seq1  TATTACTAGAAATCTCAGACAATGGATGAATCGCCTAAAGCATCACTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTAGAAATCTCAGACAATGGATGAATCGCCTAAAGCATCACTTGA  250

seq1  GTCAGAAAGCCAAGTATCTAAAAGCCAAGTAGCTAAACCCTTAGCATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAAAGCCAAGTATCTAAAAGCCAAGTAGCTAAACCCTTAGCATTTA  300

seq1  TCTCAGAATACTCGGGGCAACCTAAGTGGGCTGCAAGAGCCCCCAGGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAATACTCGGGGCAACCTAAGTGGGCTGCAAGAGCCCCCAGGTCT  350

seq1  TGGCCTGTGTGGGGGGCAATGGTCCAGCTCCGGCTCCAGCCAAAAACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGTGTGGGGGGCAATGGTCCAGCTCCGGCTCCAGCCAAAAACAAT  400

seq1  CTAATGAGCACCTTTTGTTCTCTGGGGGCTGGGGGTGGGGGTGGGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGAGCACCTTTTGTTCTCTGGGGGCTGGGGGTGGGGGTGGGG  446

seq1: chr14_20659855_20661035
seq2: B6Ng01-202F10.g_65_1237 (reverse)

seq1  -AAAAGGGATTCATGGGCATAGATCTGAATTGAGATAAAGGTTTTTTTTT  49
       ||| |||| |||| | |||||||  ||||||||||||  || | |||  
seq2  AAAAGGGGAATCAT-GTCATAGATTCGAATTGAGATAA--GTCTATTT--  45

seq1  GGGGGGGGGGGCTCAG--CTGCTGGTATGAATGCTTTTAAAAAGCTACTC  97
        |||||||| |||||  ||||||| |||||||| |||||||||||||||
seq2  -CGGGGGGGGCCTCAGGCCTGCTGG-ATGAATGCCTTTAAAAAGCTACTC  93

seq1  GATTTGAGGCAGTCTCTCCATCCAAATGGGACCCCAATACATATGCAGGT  147
      ||||  || |||||||||||||| ||| ||||||||||||||||||||  
seq2  GATTGAAGCCAGTCTCTCCATCC-AATTGGACCCCAATACATATGCAG--  140

seq1  TCCCAGGCTGTGGACACTTGTCACCAGAATCTTATGACTGGAATTCAGGG  197
      ||||||||||||||||| ||||||||||||| ||||||||||||||||||
seq2  TCCCAGGCTGTGGACAC-TGTCACCAGAATC-TATGACTGGAATTCAGGG  188

seq1  TGCAGCTTGCCA-CCACTAATTTGTCTTAAACTACTGAGGCTCCTCCAGC  246
      |||||||||||| |||||||||||||||||||||||||||||||||||| 
seq2  TGCAGCTTGCCACCCACTAATTTGTCTTAAACTACTGAGGCTCCTCCAG-  237

seq1  CCCAGAAGAGTCTCCTGGGGCATTTCTTGAAGATTGGAAGAAACCTTCAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAGAGTCTCCTGGGGCATTTCTTGAAGATTGGAAGAAACCTTCAG  287

seq1  ATCTTACATCTCTTTATTCATTAGCGT-AAAAAAAAAAGTTAGAGTGTAA  345
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATCTTACATCTCTTTATTCATTAGCGTAAAAAAAAAAAGTTAGAGTGTAA  337

seq1  AATTTGGCTTTTGTCACTCAGTCAGCTCTGGACACCCATAAGAAAATCTC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGCTTTTGTCACTCAGTCAGCTCTGGACACCCATAAGAAAATCTC  387

seq1  CAAAAACTAGAGGGCTTTTCAGGGATGAATACATCTCAGTCCATCAAGGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACTAGAGGGCTTTTCAGGGATGAATACATCTCAGTCCATCAAGGT  437

seq1  AAAAGTTAATAACTGAGACTCTACAGCAGAGGACAGGCAAAATGCCGTGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTAATAACTGAGACTCTACAGCAGAGGACAGGCAAAATGCCGTGG  487

seq1  CTGCTGCTGAGCTCTACGAAGGCAAGCAAGGTTTATGCTGACTGCATTCC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTGAGCTCTACGAAGGCAAGCAAGGTTTATGCTGACTGCATTCC  537

seq1  AGTCAGCTCACTCTGAGGCCCTACGGCTCATACTGCACTGTTCTGTATCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCTCACTCTGAGGCCCTACGGCTCATACTGCACTGTTCTGTATCC  587

seq1  AAGGGAATGACCCTCAAACAAACAAACAAACCAAATTTACCAATGTAATG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAATGACCCTCAAACAAACAAACAAACCAAATTTACCAATGTAATG  637

seq1  ATGGCAATACAGGGAGTCACAGGCAGGTGGTGACTCACTCCTTTGTGGTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAATACAGGGAGTCACAGGCAGGTGGTGACTCACTCCTTTGTGGTG  687

seq1  GTCTCGGACTGCTCTTTCTCCTTTTGGGCAGAGGTATTCTTTGAAAATTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCGGACTGCTCTTTCTCCTTTTGGGCAGAGGTATTCTTTGAAAATTA  737

seq1  GGTACCATTGTGATAGCTAATGAAACTCCATGTTCATGCTAGGCATCCAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCATTGTGATAGCTAATGAAACTCCATGTTCATGCTAGGCATCCAT  787

seq1  CTTGGTACCTAATAGCTGTTTTTCCCCCACTCAAGCTCCTAGAAAATAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTACCTAATAGCTGTTTTTCCCCCACTCAAGCTCCTAGAAAATAAA  837

seq1  TTCTTGGGAACCCTGACTCCTTAACCCTCTGCCCAGAAATGTACAACTAT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGGAACCCTGACTCCTTAACCCTCTGCCCAGAAATGTACAACTAT  887

seq1  GGCCATCTGCTTGTTATGATATGAATAATTGCTGATTTTGGTTTCTATAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCTGCTTGTTATGATATGAATAATTGCTGATTTTGGTTTCTATAA  937

seq1  CCTGCCCATTCAGACATTCAAGGACTATTTTGAAGTCACCTTGACCATCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCATTCAGACATTCAAGGACTATTTTGAAGTCACCTTGACCATCT  987

seq1  AATCTTAGCAGAGAGGAAAAGCTCTTCTGGGTTTCATCTTTAAAAGACCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAGCAGAGAGGAAAAGCTCTTCTGGGTTTCATCTTTAAAAGACCT  1037

seq1  TCTTTCACCTGCCTCTGGATAGCATATCTCTGATTTGGGCCAAAGACTGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCACCTGCCTCTGGATAGCATATCTCTGATTTGGGCCAAAGACTGT  1087

seq1  GGGTGACCCTGCTGGTGGCTTTAATAAATTTGATTAATTAAAATCTGAAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGACCCTGCTGGTGGCTTTAATAAATTTGATTAATTAAAATCTGAAA  1137

seq1  TGAGTCTAGGGATCTTTTCTGGGTGTTCTTGAATTC  1181
      ||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTAGGGATCTTTTCTGGGTGTTCTTGAATTC  1173