BAC Information

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BAC

Clone NameB6Ng01-202I24
Chromosome14 (Build37)
Map Location 46,683,246 - 46,850,003
singlet/doubletdoublet
Overlap geneLOC218963
Upstream geneLOC100041591, 5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1, Plekhc1, EG382884, Ddhd1, EG637379, LOC666834, LOC100041685, LOC625377
Downstream geneLOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202I24.bB6Ng01-202I24.g
ACCGA023022GA023023
length1,084663
definitionB6Ng01-202I24.b B6Ng01-202I24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,683,246 - 46,684,308)(46,849,335 - 46,850,003)
sequence
gaattccaagggacagtaggaaagtagtatttacagagagactgcaggaa
agagaagaagtcaaggaagtgcatggtcataggtaaagtgatgggggagg
ttctttttgcccaatctacagacaaactgatgaacttggtaactcaagta
tcacagttgttccacggcaaaaatttggggcatagtctcgccttcaacaa
gcattggataagggttgccttgagagcctgaaggagacactgatctcgag
attaataaggacattgaagactcaaaggctagttctccaagaaagaatgc
aggcattgtctgtgacaagtgaaacccagaggtgcagcaatggcagtggg
gagtgttaatgaggtggggcaggcaacacaggactggtggaaaggatcct
gaagggtctggccagaaccccccattagtatttgatattatccaagatgg
tgaaagtgttagacttgcgtctatctagacctaccttttcctgaaagcga
cttgagactagtcttcctctgtgtagaaaaaaaaaccattttttaaaact
catattgtaggtaatggttaagtgtgataatgtataagaactagttaaca
taactagtaaaaaataaaatatgtagctattgttttgtcatgccatgtga
gaatcaccttcttcgttggccctgagattctgcaggatgacaacctactc
cattgctatttaaacagcaaatgtttcagcccaaagtctcacactaaagt
aaacgtccagtcgatatttttcagttttctcaactcaatcaatggttcta
cacttttgaatctttccttctcttcatctctgatcgtgtattgcattgga
aatggttctctacctgtgttctgttttgccatgaggttcttaaagcactc
tccctacctctcttcttcctccctcctttcctttctctcttgtggagagc
ttcttggggccactttcttagaaattgggaaagaattttgacatttgggt
caggacatgaaaggtaggctcaagcaggaatttgacactggggcttaaga
acaagtaaaggaagctcagaatcttgaccatctt
gaattctgcctttcaagaaatgtacttgagccgaacttctcaaaacctaa
tgctttatagtcaaggagataggagatagaaatgccacatagtcttcttt
atctgatcacagaatttctaatctgtaccttaaaaaatgtatgtattttg
tatttatgtgtatggtatgtgtgtatgtgcatgcgtgcatgcatgtgtgt
gtgcgtgtgtgcttgtggaagtctgaggttaacattggatatcttcttct
atctgctctctccattttttttgaggtagggtttctcactgaacttggag
cttgctttttttttttttttgactagattggttggccagcaagcaccgag
ggtttgcctgtctctgatcccttctcctagctgcatctgagttctggaac
tctgaactcagatcctcacgcccaaacagtgaccactttacactttgagc
catctcttagcccctactcttaagtttaagtagccatttatcctgtatgt
aaaagtagttaattattatggagcaaacatatacagtgatagacattgga
gttgaatctcattttgtttatctaattatccaaattctatttggctatca
gtctatcattttatgttatgtgtgttaataaattctctgtgtatgtatgt
gtgtgtggtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_46683246_46684308
seq2: B6Ng01-202I24.b_48_1131

seq1  GAATTCCAAGGGACAGTAGGAAAGTAGTATTTACAGAGAGACTGCAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGGACAGTAGGAAAGTAGTATTTACAGAGAGACTGCAGGAA  50

seq1  AGAGAAGAAGTCAAGGAAGTGCATGGTCATAGGTAAAGTGATGGGGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGAAGTCAAGGAAGTGCATGGTCATAGGTAAAGTGATGGGGGAGG  100

seq1  TTCTTTTTGCCCAATCTACAGACAAACTGATGAACTTGGTAACTCAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTGCCCAATCTACAGACAAACTGATGAACTTGGTAACTCAAGTA  150

seq1  TCACAGTTGTTCCACGGCAAAAATTTGGGGCATAGTCTCGCCTTCAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTTGTTCCACGGCAAAAATTTGGGGCATAGTCTCGCCTTCAACAA  200

seq1  GCATTGGATAAGGGTTGCCTTGAGAGCCTGAAGGAGACACTGATCTCGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGATAAGGGTTGCCTTGAGAGCCTGAAGGAGACACTGATCTCGAG  250

seq1  ATTAATAAGGACATTGAAGACTCAAAGGCTAGTTCTCCAAGAAAGAATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAAGGACATTGAAGACTCAAAGGCTAGTTCTCCAAGAAAGAATGC  300

seq1  AGGCATTGTCTGTGACAAGTGAAACCCAGAGGTGCAGCAATGGCAGTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTGTCTGTGACAAGTGAAACCCAGAGGTGCAGCAATGGCAGTGGG  350

seq1  GAGTGTTAATGAGGTGGGGCAGGCAACACAGGACTGGTGGAAAGGATCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTAATGAGGTGGGGCAGGCAACACAGGACTGGTGGAAAGGATCCT  400

seq1  GAAGGGTCTGGCCAGAACCCCCCATTAGTATTTGATATTATCCAAGATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTCTGGCCAGAACCCCCCATTAGTATTTGATATTATCCAAGATGG  450

seq1  TGAAAGTGTTAGACTTGCGTCTATCTAGACCTACCTTTTCCTGAAAGCGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTGTTAGACTTGCGTCTATCTAGACCTACCTTTTCCTGAAAGCGA  500

seq1  CTTGAGACTAGTCTTCCTCTGTGTAGAAAAAAAAACCATTTTTTAAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGACTAGTCTTCCTCTGTGTAGAAAAAAAAACCATTTTTTAAAACT  550

seq1  CATATTGTAGGTAATGGTTAAGTGTGATAATGTATAAGAACTAGTTAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGTAGGTAATGGTTAAGTGTGATAATGTATAAGAACTAGTTAACA  600

seq1  TAACTAGTAAAAAATAAAATATGTAGCTATTGTTTTGTCATGCCATGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAGTAAAAAATAAAATATGTAGCTATTGTTTTGTCATGCCATGTGA  650

seq1  GAATCACCTTCTTCGTTGGCCCTGAGATTCTGCAGGATGACAACCTACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCACCTTCTTCGTTGGCCCTGAGATTCTGCAGGATGACAACCTACTC  700

seq1  CATTGCTATTTAAACAGCAAATGTTTCAG-CCAAAGTCTCACACT-AAGT  748
      ||||||||||||||||||||||||||||| ||||||||||||||| ||||
seq2  CATTGCTATTTAAACAGCAAATGTTTCAGCCCAAAGTCTCACACTAAAGT  750

seq1  -AACGTCCAGTCGATATTTTTCAG-TTTCTCAACTCAATCAATGGTTCTA  796
       ||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAACGTCCAGTCGATATTTTTCAGTTTTCTCAACTCAATCAATGGTTCTA  800

seq1  CAC-TTTGAATCTTTCC-TCTC-TCATCTCTGATCGTGTATTGCATT-GA  842
      ||| ||||||||||||| |||| |||||||||||||||||||||||| ||
seq2  CACTTTTGAATCTTTCCTTCTCTTCATCTCTGATCGTGTATTGCATTGGA  850

seq1  AAT-GTTCTCTACCTGTG-TCTGTTTTGCCCATGAGGTTC-TAAAGCACT  889
      ||| |||||||||||||| ||||||||| ||||||||||| |||||||||
seq2  AATGGTTCTCTACCTGTGTTCTGTTTTG-CCATGAGGTTCTTAAAGCACT  899

seq1  CTCCCTACCTCTC-TCTTCCTCCCTCCTTCCCTTCCTCTCTTGTGGAGAG  938
      ||||||||||||| ||||||||||||||| |||| |||||||||||||||
seq2  CTCCCTACCTCTCTTCTTCCTCCCTCCTTTCCTTTCTCTCTTGTGGAGAG  949

seq1  C-TCTTGGGGCCACTT--CTAGAAATTTGGAAAGAA-TTTGACA-TTGGG  983
      | ||||||||||||||   |||||||| |||||||| ||||||| |||||
seq2  CTTCTTGGGGCCACTTTCTTAGAAATTGGGAAAGAATTTTGACATTTGGG  999

seq1  GCAGGACATGAAA-GTAGGCTCAGGCAGGAATTTGACACT-GGGCT--AG  1029
       |||||||||||| ||||||||| |||||||||||||||| |||||  ||
seq2  TCAGGACATGAAAGGTAGGCTCAAGCAGGAATTTGACACTGGGGCTTAAG  1049

seq1  GACAAG-GAAGGAGGCTCAAGATCTTGACCATCTT  1063
       |||||  ||||| |||||  ||||||||||||||
seq2  AACAAGTAAAGGAAGCTCAGAATCTTGACCATCTT  1084

seq1: chr14_46849335_46850003
seq2: B6Ng01-202I24.g_65_727 (reverse)

seq1  ACACACACACACACACACACACATACATACACAGAGAATTTATTAACACA  50
            |||||| |||||||||||||||||||||||||||||||||||||
seq2  ------ACACAC-CACACACACATACATACACAGAGAATTTATTAACACA  43

seq1  CATAACAT-AAATGATAGACTGATAGCCAAATAGAATTTGGATAATTAGA  99
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CATAACATAAAATGATAGACTGATAGCCAAATAGAATTTGGATAATTAGA  93

seq1  TAAACAAAATGAGATTCAACTCCAATGTCTATCACTGTATATGTTTGCTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAAATGAGATTCAACTCCAATGTCTATCACTGTATATGTTTGCTC  143

seq1  CATAATAATTAACTACTTTTACATACAGGATAAATGGCTACTTAAACTTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATAATTAACTACTTTTACATACAGGATAAATGGCTACTTAAACTTA  193

seq1  AGAGTAGGGGCTAAGAGATGGCTCAAAGTGTAAAGTGGTCACTGTTTGGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGGGGCTAAGAGATGGCTCAAAGTGTAAAGTGGTCACTGTTTGGG  243

seq1  CGTGAGGATCTGAGTTCAGAGTTCCAGAACTCAGATGCAGCTAGGAGAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGGATCTGAGTTCAGAGTTCCAGAACTCAGATGCAGCTAGGAGAAG  293

seq1  GGATCAGAGACAGGCAAACCCTCGGTGCTTGCTGGCCAACCAATCTAGTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGAGACAGGCAAACCCTCGGTGCTTGCTGGCCAACCAATCTAGTC  343

seq1  AAAAAAAAAAAAAAAGCAAGCTCCAAGTTCAGTGAGAAACCCTACCTCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAGCAAGCTCCAAGTTCAGTGAGAAACCCTACCTCAA  393

seq1  AAAAAATGGAGAGAGCAGATAGAAGAAGATATCCAATGTTAACCTCAGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGGAGAGAGCAGATAGAAGAAGATATCCAATGTTAACCTCAGAC  443

seq1  TTCCACAAGCACACACGCACACACACATGCATGCACGCATGCACATACAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAAGCACACACGCACACACACATGCATGCACGCATGCACATACAC  493

seq1  ACATACCATACACATAAATACAAAATACATACATTTTTTAAGGTACAGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACCATACACATAAATACAAAATACATACATTTTTTAAGGTACAGAT  543

seq1  TAGAAATTCTGTGATCAGATAAAGAAGACTATGTGGCATTTCTATCTCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTCTGTGATCAGATAAAGAAGACTATGTGGCATTTCTATCTCCT  593

seq1  ATCTCCTTGACTATAAAGCATTAGGTTTTGAGAAGTTCGGCTCAAGTACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTTGACTATAAAGCATTAGGTTTTGAGAAGTTCGGCTCAAGTACA  643

seq1  TTTCTTGAAAGGCAGAATTC  669
      ||||||||||||||||||||
seq2  TTTCTTGAAAGGCAGAATTC  663