BAC Information

Click to search

BAC

Clone NameB6Ng01-202L02
Chromosome14 (Build37)
Map Location 56,224,904 - 56,226,020
singlet/doubletsinglet
Overlap geneIsgf3g
Upstream genePsmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31
Downstream geneRec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202L02.bB6Ng01-202L02.g
ACCGA023120GA023121
length1,1321,180
definitionB6Ng01-202L02.b B6Ng01-202L02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaggtcatctttggctacacagtgagtctgagatcggtctgact
ttatttatttatttatttatttatttatttgagacagggtttctctgtat
agccctggctgtgtcctggaactcactttgtagaccaggctggccttgaa
ctcagaaatctgcctgcctctgcatcccgagtgctgggattaaaggctgg
gattaaaaacaaaagaaaaaagtaaggtgccccccttctcctcttttctc
ccgtcactcaggagtcatgcccatcagagcttaatgcccatggccgccca
gtgtacaagaagtccttacagactcaagttttctggatgatgataaagaa
atcaatgttccgatgtggcagttcaaggatcaaagtacttaaggtgtttc
ctgatggcgaaaaagccctataaagtatgatcggccacatggactgttca
attggtagagaggttcttctaggataaggtaggttgtaagctttgctggg
tagacaatgcaggcaaggtcagaggaagcagacccaagaggaagggaaca
aggaagggtcagaaaggccacacacctgagttcagaggaagttgatgctc
caggaacactgggtcctctctaatggtggcctcagttgtgccagctcctg
gaggggaggcaaaggcactgatcactcagagtgggactgaagagtccgag
agaaaatgtgcaatagataccgaggtaggggaaacagtgccataccctcc
tctagctcagagttgcagttgctgttgctgtcgctcctgttgctgccatt
gccaccaccgcctatgttgctgccactgtctgagtggtttacaacgccat
tggtcctcccattttcctacagacacaacaagctcttgctggcacacccc
tccctttggattaatatcatccctccctcttccgcttcccttcccgagca
aatcacatcatcatagggctcccgggaaggcagggaataaggtgagtgtc
aacttctgggtggtaccttttccttaaccatatttttcttccctctcaag
tgacccaacaactgatatctcgcttgcatagatgatttctgcttccgtgg
tctgtctgtggaaaatgttgcaggcagaagaa
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcatcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
ttcacctcacaccagttagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttgatg
ggattgcaagcttgtacaaccactctggaaatcagtctggtggttcctca
gaaaattggacatagtactaccagaggatccagcaatacctctcctgggc
atatatcctgaagatgttccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gtcgctcaacagaggaatggatacagaaaaatgtggtacagggaatggat
acagaaaaatgtggtacatttacacaatggagtactactcagctattaaa
aagaatgaatttatgaaaatcctaggcaaatggatggacctggagggcat
catcctgagtgaggtaacccaatcacaaaagaactcgaacaatatgttct
cactgataagtggatattagcccagaaatttagaatacccaagatataag
atataatttgctgaacacatgaaactcaagaagaatgaagaccaaagtgt
ggacactttgccccttcttagaactgggaacaaaacacccatggaaggag
ttacagagacaaagtttggagctgagacgaaaggatagaccatctagaga
ctgccatatccaaggatccatcccataatcagcttccaaacgctgacacc
attgcatacatttagcaagattttgctgaaaggacccagatatagttgtc
tcttgtgagactatgcccgggccctggcaaacacagaagtggatgctcac
agttcagctattggatgggatcacagggcccccaatggaagaatctagag
aaagtacgagaagctgaagggatctgcaatcctaatgatgaacacattat
gaactaaccagtaccagctgccatatgatcagaaagaatggctagtcgct
atcagtgtaagaggcccatggtccgtcaacttaaatgcctcagtacaggt
ggaaccaccccatggcacaagaatagattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_56224904_56226020
seq2: B6Ng01-202L02.b_43_1174 (reverse)

seq1  TTCTTCTGCCTGCAACA-TTTCCACAGACCAACCACGGAACCAGAAATCA  49
      ||||||||||||||||| |||||||||||  ||||||||| |||||||||
seq2  TTCTTCTGCCTGCAACATTTTCCACAGACAGACCACGGAAGCAGAAATCA  50

seq1  -CCATGCAAGCGAAGTATCAGTTG-TGTGTCACCTGAGAGGGAAG-AAAA  96
       | ||||||||||  ||||||||| || ||||| ||||||||||| ||||
seq2  TCTATGCAAGCGAGATATCAGTTGTTGGGTCACTTGAGAGGGAAGAAAAA  100

seq1  TATGG-TAAGG-AAAGGTACCACCCAGAAGTTGACACTCACC-TAATCCC  143
      ||||| ||||| |||||||||||||||||||||||||||||| || ||||
seq2  TATGGTTAAGGAAAAGGTACCACCCAGAAGTTGACACTCACCTTATTCCC  150

seq1  TGCCTT-CCGGGAGCCCT-TGATGATGTGA-TTGCTCGGGAA-GGAAGCG  189
      |||||| ||||||||||| ||||||||||| ||||||||||| |||||||
seq2  TGCCTTCCCGGGAGCCCTATGATGATGTGATTTGCTCGGGAAGGGAAGCG  200

seq1  GAAGAGGGA-GGATGATA-TAATCC-AAGGGAGGGGTGTGCCAGCAAGAG  236
      ||||||||| |||||||| |||||| ||||||||||||||||||||||||
seq2  GAAGAGGGAGGGATGATATTAATCCAAAGGGAGGGGTGTGCCAGCAAGAG  250

seq1  C-TGTTGTGTCTGTAGGAAAATGGGAGGACCAATGGCGTTGTAAACCACT  285
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGTGTCTGTAGGAAAATGGGAGGACCAATGGCGTTGTAAACCACT  300

seq1  CAGACAGTGGCAGCAACATAGGCGGTGGTGGCAATGGCAGCAACAGGAGC  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGTGGCAGCAACATAGGCGGTGGTGGCAATGGCAGCAACAGGAGC  350

seq1  GACAGCAACAGCAACTGCAACTCTGAGCTAGAGGAGGGTATGGCACTGTT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAACAGCAACTGCAACTCTGAGCTAGAGGAGGGTATGGCACTGTT  400

seq1  TCCCCTACCTCGGTATCTATTGCACATTTTCTCTCGGACTCTTCAGTCCC  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTACCTCGGTATCTATTGCACATTTTCTCTCGGACTCTTCAGTCCC  450

seq1  ACTCTGAGTGATCAGTGCCTTTGCCTCCCCTCCAGGAGCTGGCACAACTG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAGTGATCAGTGCCTTTGCCTCCCCTCCAGGAGCTGGCACAACTG  500

seq1  AGGCCACCATTAGAGAGGACCCAGTGTTCCTGGAGCATCAACTTCCTCTG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACCATTAGAGAGGACCCAGTGTTCCTGGAGCATCAACTTCCTCTG  550

seq1  AACTCAGGTGTGTGGCCTTTCTGACCCTTCCTTGTTCCCTTCCTCTTGGG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGGTGTGTGGCCTTTCTGACCCTTCCTTGTTCCCTTCCTCTTGGG  600

seq1  TCTGCTTCCTCTGACCTTGCCTGCATTGTCTACCCAGCAAAGCTTACAAC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCCTCTGACCTTGCCTGCATTGTCTACCCAGCAAAGCTTACAAC  650

seq1  CTACCTTATCCTAGAAGAACCTCTCTACCAATTGAACAGTCCATGTGGCC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTATCCTAGAAGAACCTCTCTACCAATTGAACAGTCCATGTGGCC  700

seq1  GATCATACTTTATAGGGCTTTTTCGCCATCAGGAAACACCTTAAGTACTT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATACTTTATAGGGCTTTTTCGCCATCAGGAAACACCTTAAGTACTT  750

seq1  TGATCCTTGAACTGCCACATCGGAACATTGATTTCTTTATCATCATCCAG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTTGAACTGCCACATCGGAACATTGATTTCTTTATCATCATCCAG  800

seq1  AAAACTTGAGTCTGTAAGGACTTCTTGTACACTGGGCGGCCATGGGCATT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTGAGTCTGTAAGGACTTCTTGTACACTGGGCGGCCATGGGCATT  850

seq1  AAGCTCTGATGGGCATGACTCCTGAGTGACGGGAGAAAAGAGGAGAAGGG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTGATGGGCATGACTCCTGAGTGACGGGAGAAAAGAGGAGAAGGG  900

seq1  GGGCACCTTACTTTTTTCTTTTGTTTTTAATCCCAGCCTTTAATCCCAGC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACCTTACTTTTTTCTTTTGTTTTTAATCCCAGCCTTTAATCCCAGC  950

seq1  ACTCGGGATGCAGAGGCAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGTC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGGGATGCAGAGGCAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGTC  1000

seq1  TACAAAGTGAGTTCCAGGACACAGCCAGGGCTATACAGAGAAACCCTGTC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGTGAGTTCCAGGACACAGCCAGGGCTATACAGAGAAACCCTGTC  1050

seq1  TCAAATAAATAAATAAATAAATAAATAAATAAAGTCAGACCGATCTCAGA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAAATAAATAAATAAATAAATAAATAAAGTCAGACCGATCTCAGA  1100

seq1  CTCACTGTGTAGCCAAAGATGACCTTGAATTC  1117
      ||||||||||||||||||||||||||||||||
seq2  CTCACTGTGTAGCCAAAGATGACCTTGAATTC  1132