BAC Information

Click to search

BAC

Clone NameB6Ng01-202M10
Chromosome14 (Build37)
Map Location 111,774,857 - 111,978,365
singlet/doubletdoublet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501, EG223186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202M10.bB6Ng01-202M10.g
ACCGA023182GA023183
length1,1231,185
definitionB6Ng01-202M10.b B6Ng01-202M10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,774,857 - 111,775,981)(111,977,176 - 111,978,365)
sequence
gaattcactcctagtcactcccattctcggggtgtaatagtggggtgatg
ggcaagcaacgaaccaggagctgtcacgccatatcaggtgctgaaacgtc
acgctgcgggttataaaagcagcgccattttcccggttcgggatcttcct
gagaagcaagcaataaagcttttgccgcggaagattctggtttgttgcgt
ctttcttgccggtcgagcgggacgcaatattgatctattgatataactga
taattaagaggaaaggggagaagccgaacccatgggtttcattaagaaag
tccctgattcacacatacatgcagctactcattcattagcatgacaggag
atgttataaaatacatgactcagcagtaaatacacagaatcatgaaaata
cagaaagaaaaattcatcacatatagaacatatgtcataggaggaaactc
attaaaaattctatttggtcaagtatgggcatagtgaaattctgtatgtt
agattgagggtacgtaatcctttcctaagagcaccttataaggatggcta
aacggaactatttctgaataatgcctagaaactggaaaagagaatgaatc
atgaacggaagttaaaacagcagtgaaaatacagcattttgtgcaaaaca
tggcattaaggaaatatagactcactcaggaaatgaaaggcatttaattt
tgtgaataagagattacttgtagggttgatttgtaaaaggcaggaaattg
gtttggccagaaaggcagagaaacaggggccacattattcaaggtggcat
aagtcttgctaaagatgtagggcatccttttttaagaagcaaggagaact
cttgaaggtttttatgaagtcaaattccatttaatttgcatttgaaatga
tgttctttccatgttgttgggaaaatggattagaaagaaattaaagacat
agttttaaaaaacatattagtaaaagtttgcaaccaatcgaagtattaat
gacattttatgtagatttgaaagtgaccctccagcagaaagcatcggaat
aactctgagaaatgctaaccagaaaatgagtaaatgattatattctgaaa
gtaaaagcatggaaagaaattca

gaattccaagcagaaattattacaaatcaatgatgttctgctcttttaag
gatgttactctaagaaaagtggaagcattgatgggcagcaaagcaaatgc
aatgtgctttatcagtgacctaaagaattgaatttgaggagctggagaga
tggctcagtggttaagagcactggctgctctttcagaggtcatgaactca
attcccagcaaccacatggtggctcacaaccatctgtaatgggacccgat
gccctcttcttatgtgtctgaagacagctacagtgtactaataagtaaaa
taattacttattttataataagtcttagaaaaagaattaaatttggatgg
aaaacaatcctttatttttctaattgttcaacttcatgggtacattaact
ttataagcagtattcaatgtgtaacttacaaaattaaaagttggcagtga
agaaagttataacaccatgcttgagattgtaaagaatgcagttaataaga
caaagtaacataaactttgctaatttatcctacagtgtaagtacccaata
tgtggacaatttaaggatcaggcattaaagataactattgcatggtccct
ggataaagaagacaattatatcagaaaaaccaacaaaagcaaaagagtca
agatgaaactaaactatagatatttttaattaatagatatttactgttaa
taaataaacaaaaggatatttgtttattgtcagcatagaatgtatccaaa
tttcagtttctatgacttcatgaataatgtttaaaaacagaagaaagaca
attatttgagggtgacagttaattcactaattttgttttctttcagtctt
ttcttacttccctgtttatccatatctattttcacatcaacatttcactc
tctgcagggtgtagggaacatattacccagctacttaatattcttttact
ctgtcctacttctaatttgcaatccctcttaggatttgcaccttgagttt
ataatttctttctgagcagatactagcctagtgttctttcttacactcat
cttatatctttttccaaaaacagcattggtcagtagcctcatgaaagggt
gtgatagaggaaactaccttacaatctcctaagagtccgttaagaacact
ctgaaaatggaggcctgttttatcatatccaaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_111774857_111775981
seq2: B6Ng01-202M10.b_44_1166

seq1  GAATTCACTCCTAGTCACTCCCATTCTCGGGGTGTAATAGTGGGGTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCTAGTCACTCCCATTCTCGGGGTGTAATAGTGGGGTGATG  50

seq1  GGCAAGCAACGAACCAGGAGCTGTCACGCCATATCAGGTGCTGAAACGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCAACGAACCAGGAGCTGTCACGCCATATCAGGTGCTGAAACGTC  100

seq1  ACGCTGCGGGTTATAAAAGCAGCGCCATTTTCCCGGTTCGGGATCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTGCGGGTTATAAAAGCAGCGCCATTTTCCCGGTTCGGGATCTTCCT  150

seq1  GAGAAGCAAGCAATAAAGCTTTTGCCGCGGAAGATTCTGGTTTGTTGCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCAAGCAATAAAGCTTTTGCCGCGGAAGATTCTGGTTTGTTGCGT  200

seq1  CTTTCTTGCCGGTCGAGCGGGACGCAATATTGATCTATTGATATAACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGCCGGTCGAGCGGGACGCAATATTGATCTATTGATATAACTGA  250

seq1  TAATTAAGAGGAAAGGGGAGAAGCCGAACCCATGGGTTTCATTAAGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAGAGGAAAGGGGAGAAGCCGAACCCATGGGTTTCATTAAGAAAG  300

seq1  TCCCTGATTCACACATACATGCAGCTACTCATTCATTAGCATGACAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGATTCACACATACATGCAGCTACTCATTCATTAGCATGACAGGAG  350

seq1  ATGTTATAAAATACATGACTCAGCAGTAAATACACAGAATCATGAAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATAAAATACATGACTCAGCAGTAAATACACAGAATCATGAAAATA  400

seq1  CAGAAAGAAAAATTCATCACATATAGAACATATGTCATAGGAGGAAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAAAAATTCATCACATATAGAACATATGTCATAGGAGGAAACTC  450

seq1  ATTAAAAATTCTATTTGGTCAAGTATGGGCATAGTGAAATTCTGTATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAATTCTATTTGGTCAAGTATGGGCATAGTGAAATTCTGTATGTT  500

seq1  AGATTGAGGGTACGTAATCCTTTCCTAAGAGCACCTTATAAGGATGGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGAGGGTACGTAATCCTTTCCTAAGAGCACCTTATAAGGATGGCTA  550

seq1  AACGGAACTATTTCTGAATAATGCCTAGAAACTGGAAAAGAGAATGAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGAACTATTTCTGAATAATGCCTAGAAACTGGAAAAGAGAATGAATC  600

seq1  ATGAACGGAAGTTAAAACAGCAGTGAAAATACAGCATTTTGTGCAAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACGGAAGTTAAAACAGCAGTGAAAATACAGCATTTTGTGCAAAACA  650

seq1  TGGCATTAAGGAAATATAGACTCACTCAGGAAATGAAAGGCATTTAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTAAGGAAATATAGACTCACTCAGGAAATGAAAGGCATTTAATTT  700

seq1  TGTGAATAAGAGATTACTTGTAGGGTTGATTTGTAAAAGGCAGGAAATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATAAGAGATTACTTGTAGGGTTGATTTGTAAAAGGCAGGAAATTG  750

seq1  GTTTGGCCAGAAAGGCAGAGAAACAGGGGCCACATTATTCAAGGTGGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCCAGAAAGGCAGAGAAACAGGGGCCACATTATTCAAGGTGGCAT  800

seq1  AAGTCTTGCTAAAGATGTAGGGCATCC-TTTTTAAGAAGCAAGGAGAACT  849
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAGTCTTGCTAAAGATGTAGGGCATCCTTTTTTAAGAAGCAAGGAGAACT  850

seq1  CTTGAAGGTTTTTATGAAGTCAAATTCCATTTAATTTGCATTTGAAATGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGGTTTTTATGAAGTCAAATTCCATTTAATTTGCATTTGAAATGA  900

seq1  TGTTCTTTCCATGTTGTTTGGAAAATGGATTAGAAAG-AATTAAAGACAT  948
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  TGTTCTTTCCATGTTGTTGGGAAAATGGATTAGAAAGAAATTAAAGACAT  950

seq1  AG-TTTAAAAAACATAATTAGTAAAAGGTTGCAA-CAATCGAAGTAATAA  996
      || |||||||||||| ||||||||||| |||||| |||||||||| || |
seq2  AGTTTTAAAAAACAT-ATTAGTAAAAGTTTGCAACCAATCGAAGT-ATTA  998

seq1  ATGACA-TTTATGTAGATTTGAAAGTGACCCTTCCAGCAGGAAAGCA-CG  1044
      |||||| |||||||||||||||||||||||| ||||||| ||||||| ||
seq2  ATGACATTTTATGTAGATTTGAAAGTGACCC-TCCAGCA-GAAAGCATCG  1046

seq1  GATAAACTCTGAGGAAAATGCAAACCAGAAAATGAGGAAAATGA-TATAT  1093
      ||  |||||||||  |||||| ||||||||||||| | |||||| |||||
seq2  GAATAACTCTGAG--AAATGCTAACCAGAAAATGA-GTAAATGATTATAT  1093

seq1  TTTGAAAGAAAAAAGAATTGAAAAGAAATTCA  1125
      | |||||| ||||  |  || |||||||||||
seq2  TCTGAAAGTAAAAGCA--TGGAAAGAAATTCA  1123


seq1: chr14_111977176_111978365
seq2: B6Ng01-202M10.g_65_1249 (reverse)

seq1  GTTTTG--TATGATAAAACAGG-CTTCATTTTCAGATGTG-TCCTAACGG  46
      ||||||  |||||||||||||| || |||||||||| ||| || ||||||
seq2  GTTTTGGATATGATAAAACAGGCCTCCATTTTCAGA-GTGTTCTTAACGG  49

seq1  ACCTCTTTAGGAGAATTGT-AGGTAGTTTCCTCTATCACACCCTTTCATG  95
      | ||| ||||||| ||||| ||||||||||||||||||||||||||||||
seq2  A-CTC-TTAGGAG-ATTGTAAGGTAGTTTCCTCTATCACACCCTTTCATG  96

seq1  AGGCTACTGAACAATTGCTGTTTTTGGAAAAAGATATAAGATTGAGTGGT  145
      |||||||||| ||| |||||||||||||||||||||||||| ||||| ||
seq2  AGGCTACTGACCAA-TGCTGTTTTTGGAAAAAGATATAAGA-TGAGT-GT  143

seq1  AAGAAAGAACACTA-GCTAGTTATCTTGCTCAGAAAGAAATAATAAACTC  194
      |||||||||||||| ||||| |||| ||||||||||||||| ||||||||
seq2  AAGAAAGAACACTAGGCTAG-TATC-TGCTCAGAAAGAAATTATAAACTC  191

seq1  AAGGTGCAAATCCTAAAGAGGGATTTGCAAATTAGAAGTAGGACAGAGTA  244
      |||||||||||||| |||||||| ||||||||||||||||||||||||||
seq2  AAGGTGCAAATCCT-AAGAGGGA-TTGCAAATTAGAAGTAGGACAGAGTA  239

seq1  AAAGAATATTAAGTAGCTGGGTAATATGTTCCCTACACCCTGCAGAGAGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATATTAAGTAGCTGGGTAATATGTTCCCTACACCCTGCAGAGAGT  289

seq1  GAAATGTTGATGTGAAAATAGATATGGATAAACAGGGAAGTAAGAAAAGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTTGATGTGAAAATAGATATGGATAAACAGGGAAGTAAGAAAAGA  339

seq1  CTGAAAGAAAACAAAATTAGTGAATTAACTGTCACCCTCAAATAATTGTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGAAAACAAAATTAGTGAATTAACTGTCACCCTCAAATAATTGTC  389

seq1  TTTCTTCTGTTTTTAAACATTATTCATGAAGTCATAGAAACTGAAATTTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTGTTTTTAAACATTATTCATGAAGTCATAGAAACTGAAATTTG  439

seq1  GATACATTCTATGCTGACAATAAACAAATATCCTTTTGTTTATTTATTAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATTCTATGCTGACAATAAACAAATATCCTTTTGTTTATTTATTAA  489

seq1  CAGTAAATATCTATTAATTAAAAATATCTATAGTTTAGTTTCATCTTGAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAATATCTATTAATTAAAAATATCTATAGTTTAGTTTCATCTTGAC  539

seq1  TCTTTTGCTTTTGTTGGTTTTTCTGATATAATTGTCTTCTTTATCCAGGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGCTTTTGTTGGTTTTTCTGATATAATTGTCTTCTTTATCCAGGG  589

seq1  ACCATGCAATAGTTATCTTTAATGCCTGATCCTTAAATTGTCCACATATT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCAATAGTTATCTTTAATGCCTGATCCTTAAATTGTCCACATATT  639

seq1  GGGTACTTACACTGTAGGATAAATTAGCAAAGTTTATGTTACTTTGTCTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACTTACACTGTAGGATAAATTAGCAAAGTTTATGTTACTTTGTCTT  689

seq1  ATTAACTGCATTCTTTACAATCTCAAGCATGGTGTTATAACTTTCTTCAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTGCATTCTTTACAATCTCAAGCATGGTGTTATAACTTTCTTCAC  739

seq1  TGCCAACTTTTAATTTTGTAAGTTACACATTGAATACTGCTTATAAAGTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACTTTTAATTTTGTAAGTTACACATTGAATACTGCTTATAAAGTT  789

seq1  AATGTACCCATGAAGTTGAACAATTAGAAAAATAAAGGATTGTTTTCCAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACCCATGAAGTTGAACAATTAGAAAAATAAAGGATTGTTTTCCAT  839

seq1  CCAAATTTAATTCTTTTTCTAAGACTTATTATAAAATAAGTAATTATTTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTTAATTCTTTTTCTAAGACTTATTATAAAATAAGTAATTATTTT  889

seq1  ACTTATTAGTACACTGTAGCTGTCTTCAGACACATAAGAAGAGGGCATCG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTAGTACACTGTAGCTGTCTTCAGACACATAAGAAGAGGGCATCG  939

seq1  GGTCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAG  989

seq1  TTCATGACCTCTGAAAGAGCAGCCAGTGCTCTTAACCACTGAGCCATCTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGACCTCTGAAAGAGCAGCCAGTGCTCTTAACCACTGAGCCATCTC  1039

seq1  TCCAGCTCCTCAAATTCAATTCTTTAGGTCACTGATAAAGCACATTGCAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTCCTCAAATTCAATTCTTTAGGTCACTGATAAAGCACATTGCAT  1089

seq1  TTGCTTTGCTGCCCATCAATGCTTCCACTTTTCTTAGAGTAACATCCTTA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGCTGCCCATCAATGCTTCCACTTTTCTTAGAGTAACATCCTTA  1139

seq1  AAAGAGCAGAACATCATTGATTTGTAATAATTTCTGCTTGGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCAGAACATCATTGATTTGTAATAATTTCTGCTTGGAATTC  1185


| Home | SequenceCutter | Blast | Download |