BAC Information

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BAC

Clone NameB6Ng01-203E22
Chromosome14 (Build37)
Map Location 93,505,417 - 93,505,659
singlet/doubletsinglet
Overlap genePcdh9
Upstream geneLOC638252
Downstream geneLOC668566, LOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203E22.bB6Ng01-203E22.g
ACCGA023559GA023560
length1,205312
definitionB6Ng01-203E22.b B6Ng01-203E22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccacaaacacaattccacaaaaagtctatgacttttaaattcttt
tggtatctgtttcaaaaagatgggtatttaacaaagatgtgctacttcat
ggtgggtaccatgtaggactgaacactcagtctcctattctcagcactat
tagcatttatgcatctgtccactaactactatccaatgctaatagatgtt
tctgggatgtagtttgagagttgcctaggtgtatgagtataaacataaat
acttattttttaaaattcatttattttatttatttacatttcaagtgtta
tccccttacccattttcctaccctcccggaaaccccatatcccatcctta
ctctccctgtttctatgatggtgttcctccactcacccacccactcctac
ctcccaccctcaattcccctacactgggatatctatcgagccttcatagg
accaaggacctctcctcccgttgatgcctgacaaggccatcctctgctac
atatgcaactggagccatgtgtactccttggttggtggcttagtctctgg
gagctctgggatgtctggttgttcaatattgttgttctacctatggggtt
gcaaacctcttcagttccttcagtcctttctctaactgctccattgggga
catggcactaagtgcaataattggttagaatgtatttgtaaggctctggc
agtgcctctcagtagacacccatatcaggctcctttcaggaagcactttt
tagcacccacaatagtgtcagagtttggtgactgtatctgggatgaatac
ccaggtgggacagtctctggaaaggcttttccttcagtcggtgctctgta
ctttgtctccatatttgctctgtgagtattttgttccccaaggaccaaag
cacccacactttggtcttccttcttcttgagcttcatgtgatatgtgaat
tgtatcttgagtattcggagctttcagcttgaaacatgatcatttagcaa
attaaatattcagttcaactatagggggctatgatcatgccagtcatgga
catctcaacaggatcacagtatcaggcatgaaactcctttcccatagaga
gcatcaatccaattataatgggtgattcccacccctcccatattggtcat
cactgttgatctagcagtcagtgagacctgcctataatatgaccctattg
agata

tctctccagtccctgtttgcctgttttttgattaaaatgttaattgtata
ttatttgactttttaaattttttaaattgtcattacttttggagtatttc
atgcttgagcactgcatgtacatcattaccaaccctccctttctcccttt
caactactccatgctctcttccaaattcaagatctatgtaattaccattg
tatgaatatttttacatatgtattatatatgcacacatgtatatttaaca
tgctgagtcatttagatttgctggtgtttgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_93505417_93505659
seq2: B6Ng01-203E22.g_101_380 (reverse)

seq1  CACACAGATACACACACAGACACACAGACACACAGACACACAGACACACA  50
      |||||| | ||||||||| ||||||| ||||||| |||| |||  |  | 
seq2  CACACACACACACACACACACACACACACACACAAACAC-CAGCAAATCT  49

seq1  GACACACACA-CA---CACACACACA------CACACACAA-ACCTATGA  89
       |   || || ||    | | | |||      || | | || || |||| 
seq2  AAATGACTCAGCATGTTAAATATACATGTGTGCATATATAATACATATGT  99

seq1  AACAAAACCAATA-AAGAGCA--GACAAACA------------AACCCAA  124
      || || |   ||| ||  | |   ||| | |            ||   | 
seq2  AAAAATATTCATACAATGGTAATTACATAGATCTTGAATTTGGAAGAGAG  149

seq1  CAACAA-------AAATTCAGAAAATCTGGGATTGGGAAAGGTGGTC---  164
      ||   |       |||   |||||    ||| |||| || | ||  |   
seq2  CATGGAGTAGTTGAAAGGGAGAAAGGGAGGG-TTGGTAATGATGTACATG  198

seq1  ---TTCCCCAG--GGAAGGGCACACAAATTAGGTGGCCAGTGTCAAATGG  209
         | | | ||   |||   | |  ||| ||    | || | | |||   
seq2  CAGTGCTCAAGCATGAAATACTCCAAAAGTA--ATGACAATTTAAAAAAT  246

seq1  TCTGGTATGAAG----ATTACATACAATTAACATTTTA  243
      |    ||  |||    || | |||||||||||||||||
seq2  T----TAAAAAGTCAAATAATATACAATTAACATTTTA  280


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