BAC Information

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BAC

Clone NameB6Ng01-203H05
Chromosome14 (Build37)
Map Location 95,991,939 - 96,171,611
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043783, LOC677613, LOC100043784, LOC382931
Downstream gene4921530L21Rik, Klhl1, LOC100043366
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-203H05.bB6Ng01-203H05.g
ACCGA023661GA023662
length1,1781,199
definitionB6Ng01-203H05.b B6Ng01-203H05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,991,939 - 95,993,124)(96,170,426 - 96,171,611)
sequence
gaattcaattctagggacatttttttcttcaacgatattgctagtgaggg
aaaggaatcatgttaataaaataaaagttgaggttaaaactgaatgcttg
gcctcaaacagaaagtttgggagcactggggaaagcaaatattaggatct
gaagcaagatatgaggtagacaagctgacaagataaaaaggaaagaaatg
acaatagatgtcacctggaccccagcaccttctggtccttccagaaacat
gtacaaggcatgactaaagatgttgaacattctctctctctctgtctctc
tgtctctctgtctctgcctctgtctctctgtctctgtcactctgtctctg
tctctctgtctctgtctctctctccctctctctttcttctttttggcaat
ttcatttatttacatttcaactgttatcacccttcccagtctctccttca
caagctcccatccccttgtccctaactgctgccctaactcctgcctcttt
tatctgactacccactcctgcctcagcggcatagtattcccctatcaatc
tgctacaagaccatggaactcccctcccagtgacactttagaagttatca
tcagcatttcagtattagttaggaagcaagaaaatctggagaccaccatt
ctttttttttcttttttcttttttctttttttctttttttttaagttttt
tgagacatggtttctctgtatagccctggctatcctggaactcactttgt
agaccaggctggcctcgaagtcagaaatctgcctgcctcggcctcccaag
tgctgggattaaaggcatgcaacaccacaccaggtaggagaccaccattc
tttaaagccacaccagagacctctgtgtttcatgttacctcactccaggc
tgggaggctccagatataggaccagtgaaataaattacctgcttgatcta
tctgtgtcctgagtgaaatctaggatcagacaccaaggtaattgcacttg
gattggaggaaatactagacaaatctttatccataacatcagtagatgat
ataagacctatagtttcaacatagaacataaaaacttggagtacctcatt
tatttactgctataactaccctcgaagcattaataagaatgatatgattg
atgggtgaaccaaggtcaaataattctg

gaattcatagacgtcccttcttatgtctgataaaaaccatattcttattc
acaacctcaggcactcacagtctcttggtccctattctgtaatgatctgt
gagatcttagagaaggttgtatgatatatatgttttatacgggctgcgaa
atagtctcttttttgaccaggtgtctactatacaaagaaccttctctgat
aagacataatcagtaacatttgaacatgcagaaataatacatacaatttt
agggaataatggtatccataaaacagtttagaaaaacgttttctttttaa
ataattcctactatggaaacagtagttataaatccattcctcgtgttcat
tttgtcattattgagtattacatgtcataactacaaacacatttttggta
tgcttatgttgtacagtgtatgtctgtcaaatgtaacatcacattctctt
tcctttcacttttgttgccttctagattgaattagatatttacatatttc
acaaatatggcttttatggccacatgttttaaaccattttctagcataaa
aatgtattttgaacaaaatgtcaaagatattaacaaactcaagacaatta
ctttatatcgaggtaagattaatcaaataaaaagaatgatcaaaatatac
aatatgaaaaagataatgaaggctcatcttaaaaaaaagaaacatttaca
ccactgcccattagactcagaaacattatagagggcagggtaggatgaat
agaagaagcaagctaatgttataaaatgccatcatctacatttgataagc
gcattaacaatgatgattatctgtagaaaacatagactattcctatttaa
caatcacccttagaagggtaagggtttcagcggattcattcttttactgt
tgaactaagggctattggtgactatggtaatgggaaaagtttttcttcca
gttctactctcctgagtatttatgttcgtaacaagctgaattgtatatca
tataaatatatatcatataatatatataaataatcatataccatggtaat
aaaatcaatatatattcacaatactggtaaaacattaataatataaaaca
catttcattaatttaaactaacattcaacctgaatgacatctagaatatt
gtacttccggaattcctgtgaatgaggaggcattaaatattggataaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_95991939_95993124
seq2: B6Ng01-203H05.b_47_1224

seq1  GAATTCAATTCTAGGGACATTTTTTTCTTCAACGATATTGCTAGTGAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCTAGGGACATTTTTTTCTTCAACGATATTGCTAGTGAGGG  50

seq1  AAAGGAATCATGTTAATAAAATAAAAGTTGAGGTTAAAACTGAATGCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAATCATGTTAATAAAATAAAAGTTGAGGTTAAAACTGAATGCTTG  100

seq1  GCCTCAAACAGAAAGTTTGGGAGCACTGGGGAAAGCAAATATTAGGATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAAACAGAAAGTTTGGGAGCACTGGGGAAAGCAAATATTAGGATCT  150

seq1  GAAGCAAGATATGAGGTAGACAAGCTGACAAGATAAAAAGGAAAGAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAGATATGAGGTAGACAAGCTGACAAGATAAAAAGGAAAGAAATG  200

seq1  ACAATAGATGTCACCTGGACCCCAGCACCTTCTGGTCCTTCCAGAAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGATGTCACCTGGACCCCAGCACCTTCTGGTCCTTCCAGAAACAT  250

seq1  GTACAAGGCATGACTAAAGATGTTGAACATTCTCTCTCTCTCTGTCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGGCATGACTAAAGATGTTGAACATTCTCTCTCTCTCTGTCTCTC  300

seq1  TGTCTCTCTGTCTCTGCCTCTGTCTCTCTGTCTCTGTCACTCTGTCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTCTGTCTCTGCCTCTGTCTCTCTGTCTCTGTCACTCTGTCTCTG  350

seq1  TCTCTCTGTCTCTGTCTCTCTCTCCCTCTCTCTTTCTTCTTTTTGGCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGTCTCTGTCTCTCTCTCCCTCTCTCTTTCTTCTTTTTGGCAAT  400

seq1  TTCATTTATTTACATTTCAACTGTTATCACCCTTCCCAGTCTCTCCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTATTTACATTTCAACTGTTATCACCCTTCCCAGTCTCTCCTTCA  450

seq1  CAAGCTCCCATCCCCTTGTCCCTAACTGCTGCCCTAACTCCTGCCTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCCCATCCCCTTGTCCCTAACTGCTGCCCTAACTCCTGCCTCTTT  500

seq1  TATCTGACTACCCACTCCTGCCTCAGCGGCATAGTATTCCCCTATCAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGACTACCCACTCCTGCCTCAGCGGCATAGTATTCCCCTATCAATC  550

seq1  TGCTACAAGACCATGGAACTCCCCTCCCAGTGACACTTTAGAAGTTATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACAAGACCATGGAACTCCCCTCCCAGTGACACTTTAGAAGTTATCA  600

seq1  TCAGCATTTCAGTATTAGTTAGGAAGCAAGAAAATCTGGAGACCACCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATTTCAGTATTAGTTAGGAAGCAAGAAAATCTGGAGACCACCATT  650

seq1  CTTTTTTTTTCTTTTTTCTTTTTTCTTTTTTTCTTTTTTTTTAAGTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTCTTTTTTCTTTTTTCTTTTTTTCTTTTTTTTTAAGTTTTT  700

seq1  TGAGACATGGTTTCTCTGTATAGCCCTGGCTATCCTGGAACTCACTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACATGGTTTCTCTGTATAGCCCTGGCTATCCTGGAACTCACTTTGT  750

seq1  AGACCAGGCTGGCCTCGAAGTCAGAAATCTGCCTGCCTCGGCCTCCCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTGGCCTCGAAGTCAGAAATCTGCCTGCCTCGGCCTCCCAAG  800

seq1  TGCTGGGATTAAAGGCATGCAACACCACACCAGGTAGGAGACCACCATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGATTAAAGGCATGCAACACCACACCAGGTAGGAGACCACCATTC  850

seq1  TTTAAAGCCACACCAGAGACCTCTGTGTTTCATGTTACCTCACTCCAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGCCACACCAGAGACCTCTGTGTTTCATGTTACCTCACTCCAGGC  900

seq1  TGGGAGGCTCCAGATATAGGACCAGTGAAATAAATTACCTGCTTGATCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCTCCAGATATAGGACCAGTGAAATAAATTACCTGCTTGATCTA  950

seq1  TCTGTGTCCTGGAGTGAAATCTAGGATCAAGACAACCAAGGTAATTGCAA  1000
      |||||||||| ||||||||||||||||| |||| |||||||||||||| |
seq2  TCTGTGTCCT-GAGTGAAATCTAGGATC-AGAC-ACCAAGGTAATTGC-A  996

seq1  CTTGGATTGGAGGAAATACTAGACAAATC-TTATCCATAACATCAGTAGA  1049
      ||||||||||||||||||||||||||||| ||||||||||||||||||| 
seq2  CTTGGATTGGAGGAAATACTAGACAAATCTTTATCCATAACATCAGTAG-  1045

seq1  ATGATATAAGACCTAATAGTTTTCAACATAG-ACAT-AAAACTT-GAGTA  1096
      |||||||||||||| |||| ||||||||||| |||| ||||||| |||||
seq2  ATGATATAAGACCT-ATAG-TTTCAACATAGAACATAAAAACTTGGAGTA  1093

seq1  CCTCATATATTTACTGCTAATTACTACCTCAGAAGCATTTAATAAG-ATG  1145
      |||||| ||||||||||| || ||||||   |||||| |||||||| |||
seq2  CCTCATTTATTTACTGCT-ATAACTACCCTCGAAGCA-TTAATAAGAATG  1141

seq1  ATAATGATTTGATGGTTGAACACAAGGTAAAATAATATCTG  1186
      || |||| ||||||| ||||| |||||| ||||||| ||||
seq2  AT-ATGA-TTGATGGGTGAAC-CAAGGTCAAATAAT-TCTG  1178


seq1: chr14_96170426_96171611
seq2: B6Ng01-203H05.g_65_1263 (reverse)

seq1  TCTTAT-CAATATTTATTGCTCTTCT-ATTCACA-GAAATCTGGAAGTGA  47
      |||||| ||||||||| ||| || || ||||||| ||| || |||||| |
seq2  TCTTATCCAATATTTAATGC-CTCCTCATTCACAGGAATTCCGGAAGT-A  48

seq1  CAATAATCTAGATGTCCATCA-GTTGATGGTTAGTT--AAATAATGAAA-  93
      ||||| ||||||||||  ||| |||||  |||||||  || |||||||| 
seq2  CAATATTCTAGATGTCATTCAGGTTGAATGTTAGTTTAAATTAATGAAAT  98

seq1  ATGTGTTATATAATTAATG-TATACCAGTA-TGTG-ATATATA-TGATTT  139
       ||| |||||| ||||||| | |||||||| |||| ||||||| ||||||
seq2  GTGTTTTATATTATTAATGTTTTACCAGTATTGTGAATATATATTGATTT  148

seq1  TA-TAACAT-GTATATGATTATATAATATATATTATATGATATATA-TTA  186
      || || ||| |||||||||||| | ||||||||||||||||||||| |||
seq2  TATTACCATGGTATATGATTAT-TTATATATATTATATGATATATATTTA  197

seq1  TATGATATACAATTCAGC-TGTTACGAACATAAATACTCAGGAGAGTAGA  235
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TATGATATACAATTCAGCTTGTTACGAACATAAATACTCAGGAGAGTAGA  247

seq1  ACTGGAAGAAAAACTTTTCCCATTACCATAGTCACCAATAGCCCTTAGTT  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAGAAAAACTTTTCCCATTACCATAGTCACCAATAGCCCTTAGTT  297

seq1  CAACAGTAAAAGAATGAATCCGCTGAAACCCTTACCCTTCTAAGGGTGAT  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTAAAAGAATGAATCCGCTGAAACCCTTACCCTTCTAAGGGTGAT  347

seq1  TGTT-AATAGGAATAGTCTATGTTTTCTACAGATAATCATCATTGTTAAT  384
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAATAGGAATAGTCTATGTTTTCTACAGATAATCATCATTGTTAAT  397

seq1  GCGCTTATCAAATGTAGATGATGGCATTTTATAACATTAGCTTGCTTCTT  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTTATCAAATGTAGATGATGGCATTTTATAACATTAGCTTGCTTCTT  447

seq1  CTATTCATCCTACCCTGCCCTCTATAATGTTTCTGAGTCTAATGGGCAGT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCATCCTACCCTGCCCTCTATAATGTTTCTGAGTCTAATGGGCAGT  497

seq1  GGTGTAAATGTTTCTTTTTTTTAAGATGAGCCTTCATTATCTTTTTCATA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAAATGTTTCTTTTTTTTAAGATGAGCCTTCATTATCTTTTTCATA  547

seq1  TTGTATATTTTGATCATTCTTTTTATTTGATTAATCTTACCTCGATATAA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATATTTTGATCATTCTTTTTATTTGATTAATCTTACCTCGATATAA  597

seq1  AGTAATTGTCTTGAGTTTGTTAATATCTTTGACATTTTGTTCAAAATACA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTGTCTTGAGTTTGTTAATATCTTTGACATTTTGTTCAAAATACA  647

seq1  TTTTTATGCTAGAAAATGGTTTAAAACATGTGGCCATAAAAGCCATATTT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATGCTAGAAAATGGTTTAAAACATGTGGCCATAAAAGCCATATTT  697

seq1  GTGAAATATGTAAATATCTAATTCAATCTAGAAGGCAACAAAAGTGAAAG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATATGTAAATATCTAATTCAATCTAGAAGGCAACAAAAGTGAAAG  747

seq1  GAAAGAGAATGTGATGTTACATTTGACAGACATACACTGTACAACATAAG  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAATGTGATGTTACATTTGACAGACATACACTGTACAACATAAG  797

seq1  CATACCAAAAATGTGTTTGTAGTTATGACATGTAATACTCAATAATGACA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCAAAAATGTGTTTGTAGTTATGACATGTAATACTCAATAATGACA  847

seq1  AAATGAACACGAGGAATGGATTTATAACTACTGTTTCCATAGTAGGAATT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAACACGAGGAATGGATTTATAACTACTGTTTCCATAGTAGGAATT  897

seq1  ATTTAAAAAGAAAACGTTTTTCTAAACTGTTTTATGGATACCATTATTCC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAAGAAAACGTTTTTCTAAACTGTTTTATGGATACCATTATTCC  947

seq1  CTAAAATTGTATGTATTATTTCTGCATGTTCAAATGTTACTGATTATGTC  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATTGTATGTATTATTTCTGCATGTTCAAATGTTACTGATTATGTC  997

seq1  TTATCAGAGAAGGTTCTTTGTATAGTAGACACCTGGTCAAAAAAGAGACT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGAGAAGGTTCTTTGTATAGTAGACACCTGGTCAAAAAAGAGACT  1047

seq1  ATTTCGCAGCCCGTATAAAACATATATATCATACAACCTTCTCTAAGATC  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGCAGCCCGTATAAAACATATATATCATACAACCTTCTCTAAGATC  1097

seq1  TCACAGATCATTACAGAATAGGGACCAAGAGACTGTGAGTGCCTGAGGTT  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGATCATTACAGAATAGGGACCAAGAGACTGTGAGTGCCTGAGGTT  1147

seq1  GTGAATAAGAATATGGTTTTTATCAGACATAAGAAGGGACGTCTATGAAT  1184
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATAAGAATATGGTTTTTATCAGACATAAGAAGGGACGTCTATGAAT  1197

seq1  TC  1186
      ||
seq2  TC  1199


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