BAC Information

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BAC

Clone NameB6Ng01-204A16
Chromosome14 (Build37)18 (Build37)
Map Location 86,505,667 - 86,506,84845,167,921 - 45,168,372
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668603
Downstream geneLOC100043301, EG629815, LOC100043306, LOC100043778, LOC100043310, LOC100043311, Diap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204A16.bB6Ng01-204A16.g
ACCGA024094GA024095
length1,191554
definitionB6Ng01-204A16.b B6Ng01-204A16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(86,505,667 - 86,506,848)(45,167,921 - 45,168,372)
sequence
gaattcttctcataaacaaacaaactcttccctttccctgaattgatggt
atttaattttcctactataatataaaacaatacacattctaaggcacagt
agtgtgagttatgtttgcattcttacagatttgtaaaatgcgctggtcaa
taatgaaaccattaaaatgtgggaaaggaggcatatagaataatattgct
ttttccttatgcttttactactgattaacataattttgttgatgttaaag
taaaaaaaaaaagtatggcaaaggctaggaatgtaactcagttgctgaag
ttgcctattacacataaagccctggtttttataactccagtatcacatca
gtaagaactagatgtaaggggagggtgttgcggctcaaagggtaataccc
cttgttacacaactatgggccttgtgtttagcactccagtcctgtagctg
gatgtggccacatgtacctataatgttaacacttttgggcaagtaccaag
aaaatggctggtgcttccttccaggcagccaggcttgttctacattcaat
gagatcccctgagcattcaatgtcttcttttgcctctgaacaaatacact
ttgatgtatacacagcacatgcattttcatgcaacacacatactcctaca
cacattaaataaacaaacaaacaactcaggtatagtggcttacatctgaa
acctcaacacttctagaagggaagccaagcgcatgggaaattcaacattg
tccttacagatagtcattgctaatctgtaatatatgacattctgcctcta
aagcaaaaggaatgtaagataagattagcattatattccaaaaaatagaa
gtgatattataagaaaaacaaattcttggaccaaattcttaataaatggt
attagtaataagtaaaagggaaataaatatgggaaacttataataatagc
cacaatttaagaatcatgatatttttataacactatatattatatatata
tatagtgttaacactatatatatatataaatactttaaaaaatattcatt
gaagacaccttataaggaagatgttatatttttatatgtgtaaaacctat
taataaatactagctgttaatattgtgcccagtactccttcaggctagct
taaccagcactgtgtggtctaagtcatctctcataacttac

gaattctttgtttagctctgagccccattttttttaatggggttgcctgg
gccattcttaatgttgcctcttgagtaaattgtcagattgactattttct
tttttccttgctacccagtaactatttaattacgtgaagttccctttacc
tgttgttgctcctatttcttgagcaaccacattcctatgaaggaactgct
gacctgtgcctggatataatagtgtacccccgtaccttttcttttaggag
ttttagaggttcaggctttaagttgaattgatttatttactccgagttca
tttttgtgcatctggggaaatgaggctcattctagttttttcttctttat
gttaacacccaatttttccaatatcatttgttgaaggtacttttccttga
atgtgtgtttttgatatctttgtaaaaaagtaattgtctatacttgtgtg
gccttaaatataaacatttattctattccactaatctgtgtgtgtatgtg
tgtgtgtttgtgtgtgtgtgtgtgaatgctaatgctctgtagaataataa
gatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_86505667_86506848
seq2: B6Ng01-204A16.b_45_1235

seq1  GAATTCTTCTCATAAACAAACAAACTCTTCCCTTTCCCTGAATTGATGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCATAAACAAACAAACTCTTCCCTTTCCCTGAATTGATGGT  50

seq1  ATTTAATTTTCCTACTATAATATAAAACAATACACATTCTAAGGCACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTTTCCTACTATAATATAAAACAATACACATTCTAAGGCACAGT  100

seq1  AGTGTGAGTTATGTTTGCATTCTTACAGATTTGTAAAATGCGCTGGTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAGTTATGTTTGCATTCTTACAGATTTGTAAAATGCGCTGGTCAA  150

seq1  TAATGAAACCATTAAAATGTGGGAAAGGAGGCATATAGAATAATATTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAACCATTAAAATGTGGGAAAGGAGGCATATAGAATAATATTGCT  200

seq1  TTTTCCTTATGCTTTTACTACTGATTAACATAATTTTGTTGATGTTAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTATGCTTTTACTACTGATTAACATAATTTTGTTGATGTTAAAG  250

seq1  TAAAAAAAAAAAGTATGGCAAAGGCTAGGAATGTAACTCAGTTGCTGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAAGTATGGCAAAGGCTAGGAATGTAACTCAGTTGCTGAAG  300

seq1  TTGCCTATTACACATAAAGCCCTGGTTTTTATAACTCCAGTATCACATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTATTACACATAAAGCCCTGGTTTTTATAACTCCAGTATCACATCA  350

seq1  GTAAGAACTAGATGTAAGGGGAGGGTGTTGCGGCTCAAAGGGTAATACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAACTAGATGTAAGGGGAGGGTGTTGCGGCTCAAAGGGTAATACCC  400

seq1  CTTGTTACACAACTATGGGCCTTGTGTTTAGCACTCCAGTCCTGTAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTACACAACTATGGGCCTTGTGTTTAGCACTCCAGTCCTGTAGCTG  450

seq1  GATGTGGCCACATGTACCTATAATGTTAACACTTTTGGGCAAGTACCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGCCACATGTACCTATAATGTTAACACTTTTGGGCAAGTACCAAG  500

seq1  AAAATGGCTGGTGCTTCCTTCCAGGCAGCCAGGCTTGTTCTACATTCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGCTGGTGCTTCCTTCCAGGCAGCCAGGCTTGTTCTACATTCAAT  550

seq1  GAGATCCCCTGAGCATTCAATGTCTTCTTTTGCCTCTGAACAAATACACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCCCTGAGCATTCAATGTCTTCTTTTGCCTCTGAACAAATACACT  600

seq1  TTGATGTATACACAGCACATGCATTTTCATGCAACACACATACTCCTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTATACACAGCACATGCATTTTCATGCAACACACATACTCCTACA  650

seq1  CACATTAAATAAACAAACAAACAACTCAGGTATAGTGGCTTACATCTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAAATAAACAAACAAACAACTCAGGTATAGTGGCTTACATCTGAA  700

seq1  ACCTCAACACTTCTAGAAGGGAAGCCAAGCGCATGGGAAATTCAACATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAACACTTCTAGAAGGGAAGCCAAGCGCATGGGAAATTCAACATTG  750

seq1  TCCTTACAGATAGTCATTGCTAATCTGTAATATATGACATTCTGCCTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACAGATAGTCATTGCTAATCTGTAATATATGACATTCTGCCTCTA  800

seq1  AAGCAAAAGGAATGTAAGATAAGATTAGCATTATATTCCAAAAAATAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAAGGAATGTAAGATAAGATTAGCATTATATTCCAAAAAATAGAA  850

seq1  GTGATATTATAAGAAAAACAAATTCTTGGACCAAATTCTTAATAAATGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATTATAAGAAAAACAAATTCTTGGACCAAATTCTTAATAAATGGT  900

seq1  ATTAGTAATAAGTAAAAGGG-AATAAATAT-GGAAACTTATAATAATAGC  948
      |||||||||||||||||||| ||||||||| |||||||||||||||||||
seq2  ATTAGTAATAAGTAAAAGGGAAATAAATATGGGAAACTTATAATAATAGC  950

seq1  CACAA-TTAAGAATCATGATA-TTTTATAACACTATATA-TATATATATA  995
      ||||| ||||||||||||||| ||||||||||||||||| ||||||||||
seq2  CACAATTTAAGAATCATGATATTTTTATAACACTATATATTATATATATA  1000

seq1  TATAGTGTTAACACTATATATATATATAAAATACCTT-AAAAATA-TCAA  1043
      ||||||||||||||||||||||||||| |||||| || ||||||| ||| 
seq2  TATAGTGTTAACACTATATATATATAT-AAATACTTTAAAAAATATTCAT  1049

seq1  TGAAGACACC-TATAAGGGAAGATG-TATATTTTATAATGTGTAAAA-CT  1090
      |||||||||| ||||| |||||||| ||||||||   |||||||||| ||
seq2  TGAAGACACCTTATAA-GGAAGATGTTATATTTTTATATGTGTAAAACCT  1098

seq1  ATTA--TAATACTAGCTGTAAATA-TGTGCCCAAGTACCTCTTCAGGGCT  1137
      ||||   |||||||||||| |||| ||||||| |||||  ||||| ||||
seq2  ATTAATAAATACTAGCTGTTAATATTGTGCCC-AGTACTCCTTCA-GGCT  1146

seq1  TAACCTTACCCAGCAACTTGTGGTCTAA---AGTACTCATAAACTTAC  1182
        | |||| ||||||   ||||||||||   |   ||||| |||||||
seq2  --AGCTTAACCAGCACTGTGTGGTCTAAGTCATCTCTCAT-AACTTAC  1191


seq1: chr18_45167921_45168372
seq2: B6Ng01-204A16.g_545_589 (reverse)

seq1  CACACACACACACACAAACAGGGGGGTGGGGGAGGAAGGGGAAACAAGGG  50
                                                        
seq2  --------------------------------------------------  0

seq1  GAGGGGAGGGAGACTGAGAGGAAAGGAGAGATGAAGAGAAGGGTGAGGGA  100
                                                        
seq2  --------------------------------------------------  0

seq1  GAGGGAGAGCAGGAGAGGGGAGAGAGAGAGGGAGAAGGAGAATAAGAGAG  150
                                                        
seq2  --------------------------------------------------  0

seq1  GGAAGAGAGGGAGGGGGAGAGAGAGGTTGAGAGGGAAGGGGAGGGGGAGG  200
                                                        
seq2  --------------------------------------------------  0

seq1  GGAGGAGGGAGGGGGAGGGGGAGGGGGAGGGGGGAGAGGGAGAGGGAGAG  250
                                                        
seq2  --------------------------------------------------  0

seq1  GAAGCCCATGAGGCTTTGCTAGGCCAACCAGTATGAGAAAGTAACCCTGT  300
                                                        
seq2  --------------------------------------------------  0

seq1  GTGCAAAAGATAGGCCTTTTGCAGTCTAAGGGCTGAGGCAGGGATGAGGT  350
                                                        
seq2  --------------------------------------------------  0

seq1  TCAGATAACTAATAAGTCCTAGACCGATTAGACTATACACAAAACACACA  400
                                                        
seq2  --------------------------------------------------  0

seq1  CACACACACACACACACACACACACACACACACACACACACAGAGTTTTA  450
          |||||||||||||||| ||||||||||| |||||||||||   |||
seq2  ----CACACACACACACACAAACACACACACATACACACACAGA---TTA  43

seq1  GT  452
      ||
seq2  GT  45


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