BAC Information

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BAC

Clone NameB6Ng01-204H01
Chromosome14 (Build37)
Map Location 59,892,236 - 60,005,330
singlet/doubletdoublet
Overlap genePhf11, EG236451, D14Ertd668e, EG628705
Upstream geneEG668177, EG668182, 1700129C05Rik, EG380907, Rcbtb1, EG628693
Downstream geneSetdb2, Cab39l, Cdadc1, Tmem46, Atp8a2, LOC668162, LOC628768, Nupl1, Mtmr6, 2600011E07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204H01.bB6Ng01-204H01.g
ACCGA024388GA024389
length1,1881,099
definitionB6Ng01-204H01.b B6Ng01-204H01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,004,165 - 60,005,330)(59,892,236 - 59,893,317)
sequence
gaattcactctgaagatcaggctggccttgaactcagagttccacctggt
tctacctacctaccaaggactgggattaaagatgtataccataaccacct
ggcaatgttttatatatttcaacctttaaatggtttctctttcagctgat
ggcccaagcatgaagaggaagagaggaagaaagaaacgcctctcatcagg
ccctcctgcacaggtaacttgacttataggcctaatttcttctcataatg
ctcttacttagaattctaaatgccaaagcctcacggttttcaatcattgg
aggagttggcatttgcacaccatccttcatgcatgttctctcctcagtgg
agctgaagctaacttagcgtggcatcgtggggagaatcctgcactcagga
agtgcagaccatcctgacatggcagaagaagcatactgaagagtattaag
aggctagaggctcatgggatgatgtcattccctcagcttctgtcaattat
tccttgaaccatgctagtgaaaacacgtgtcctttcatgacacttagtcc
ttcacaggctgagagtacggacaagcatttgtttataaccaagtgtttcc
cagtgacctggtccacacataaccaaatttctgacttaaaatcttctgaa
ttattagatacaaaatgtaaaagaatttgaagggatttgaaacagttttt
tatatcagtttctatacattgattagtatcagacaataatctctccctct
tattcaacagatgtttttcatgccacaaacagcatgaaaatgccatttgg
atccaggagttcatcaaaaccaaaattaaaaaaaaattgtcttaatatgc
ctttttttggttagatttgattaacagatttgatttttgtagaagaacat
ttttaatttcatgtggtattccaggccaacatgaaaatttcaatataatc
tttgattttctcttccagcccaaaagtgggtgaaattcatgagatcccaa
aagacatgtgacaggagagccctcttcggtcacagagtttggtctcaggt
gttgactgtgtgacaatgaatggatcaaaatacctagagggatcttggaa
cccatataaactttaagctgggtttcaatgctttgaattccttaatcttc
tgggtaatttgggtatatatttagaacataaattcttt
gaattcattaacatttaaaaacatattttgagtaaatagactcacatcac
atgctcctttcttttttgtaccccaactcctcctggagaccccctttaaa
acctgaaatacctttcatttttatcatattctttttttaaagatttattt
atcaattatatgtaagtacactgtagctttcttaagacactccagaagag
ggcaccagaactcgttacagatggtagtgagccactatgtggttgttggg
atttgaactttggaccttcaggagagcagtcagtgctcttactcgctgag
ccatcttgccagcccccatattctttaaaatttataaaatactgtaacaa
tgaaaatgagtattgcaaaagttgtttcatataaaacaacaatcaattga
acagtcttatgtagatgcttgtctacagcaatagtgaaaataaatgtttt
tctcaatataaattttaaataactccaaatattttaactgtatgatattt
taaaataatttatcactattagttgttggtttattttttttagtttttcg
agacaggatttctctgtatagccctggctgttctggaactcactgtctct
atatagacaaggctgtgcttgaactcagaaattcacctacctctgccttc
gaagtgctgggattaaaggcatgcaccaccatgccgggctatactcttag
tatttttaatgaacataaagtctgtttgtttgttttgttttgttttgttt
ttagtagagcttaaaatcttggcttttactgtggtacaaacacaaaaata
acaattttttggacattggagttcactgtaaaaaggcctgtacatcaatg
tcatttcacatcaccaaaggatttttacctccatagtagataagctaaga
gttgccagtttctgctgcaccaaggaaatgaattataagcacagtttttg
ggatacaggatttccttgctatgttcaaacttatttcacttgcattgatg
gatgtcattcttcaagccatagttaacagttaacaattcatttataattg
ctctgatgtaattagatgattctaatccatgaggtcaattcatcaactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_60004165_60005330
seq2: B6Ng01-204H01.b_49_1236 (reverse)

seq1  AAAG-ATTTATGTTCTTATTATATACC--AAATACACAGAAGAATAAAGA  47
      |||| ||||||||||| | ||||||||  || ||| ||||||| ||| ||
seq2  AAAGAATTTATGTTCTAAATATATACCCAAATTACCCAGAAGATTAAGGA  50

seq1  --TCAAAGCA-TGACA-CCAGCTTTAAG-TTATATGGGT--CAAGATTCC  90
        |||||||| ||| | ||||||| ||| ||||||||||  |||||| ||
seq2  ATTCAAAGCATTGAAACCCAGCTTAAAGTTTATATGGGTTCCAAGATCCC  100

seq1  TCTAAGTATTTTGATCCA-TCATTGTCACACAGTCAACA-CTGAGACCAA  138
      |||| ||||||||||||| |||||||||||||||||||| ||||||||||
seq2  TCTAGGTATTTTGATCCATTCATTGTCACACAGTCAACACCTGAGACCAA  150

seq1  CCTCTGTGGCCG-AGA-GGCTCTCCTGTCACATGTCTTTT-GGATCTCAT  185
       ||||||| ||| ||| ||||||||||||||||||||||| |||||||||
seq2  ACTCTGTGACCGAAGAGGGCTCTCCTGTCACATGTCTTTTGGGATCTCAT  200

seq1  GAATTTCA-CCACTTTT-GGCTGGAAGAGAAAA-CCAAGATTATATTG-A  231
      |||||||| |||||||| ||||||||||||||| | |||||||||||| |
seq2  GAATTTCACCCACTTTTGGGCTGGAAGAGAAAATCAAAGATTATATTGAA  250

seq1  ATTTTCATGTTGGCCTGGAATACCACATGAAATT-AAAATGTTCTTCTAC  280
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATTTTCATGTTGGCCTGGAATACCACATGAAATTAAAAATGTTCTTCTAC  300

seq1  -AAAATCAAATCTGTTAATCAAATCTAACC-AAAAAAGGCATATTAAGAC  328
       ||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAAAATCAAATCTGTTAATCAAATCTAACCAAAAAAAGGCATATTAAGAC  350

seq1  AATTTTTTTTTAATTTTGGTTTTGATGAACTCCTGGATCCAAATGGCATT  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTTTTAATTTTGGTTTTGATGAACTCCTGGATCCAAATGGCATT  400

seq1  TTCATGCTGTTTGTGGCATGAAAAACATCTGTTGAATAAGAGGGAGAGAT  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCTGTTTGTGGCATGAAAAACATCTGTTGAATAAGAGGGAGAGAT  450

seq1  TATTGTCTGATACTAATCAATGTATAGAAACTGATATAAAAAACTGTTTC  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCTGATACTAATCAATGTATAGAAACTGATATAAAAAACTGTTTC  500

seq1  AAATCCCTTCAAATTCTTTTACATTTTGTATCTAATAATTCAGAAGATTT  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCTTCAAATTCTTTTACATTTTGTATCTAATAATTCAGAAGATTT  550

seq1  TAAGTCAGAAATTTGGTTATGTGTGGACCAGGTCACTGGGAAACACTTGG  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCAGAAATTTGGTTATGTGTGGACCAGGTCACTGGGAAACACTTGG  600

seq1  TTATAAACAAATGCTTGTCCGTACTCTCAGCCTGTGAAGGACTAAGTGTC  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAACAAATGCTTGTCCGTACTCTCAGCCTGTGAAGGACTAAGTGTC  650

seq1  ATGAAAGGACACGTGTTTTCACTAGCATGGTTCAAGGAATAATTGACAGA  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGGACACGTGTTTTCACTAGCATGGTTCAAGGAATAATTGACAGA  700

seq1  AGCTGAGGGAATGACATCATCCCATGAGCCTCTAGCCTCTTAATACTCTT  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGGGAATGACATCATCCCATGAGCCTCTAGCCTCTTAATACTCTT  750

seq1  CAGTATGCTTCTTCTGCCATGTCAGGATGGTCTGCACTTCCTGAGTGCAG  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGCTTCTTCTGCCATGTCAGGATGGTCTGCACTTCCTGAGTGCAG  800

seq1  GATTCTCCCCACGATGCCACGCTAAGTTAGCTTCAGCTCCACTGAGGAGA  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCCCCACGATGCCACGCTAAGTTAGCTTCAGCTCCACTGAGGAGA  850

seq1  GAACATGCATGAAGGATGGTGTGCAAATGCCAACTCCTCCAATGATTGAA  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGCATGAAGGATGGTGTGCAAATGCCAACTCCTCCAATGATTGAA  900

seq1  AACCGTGAGGCTTTGGCATTTAGAATTCTAAGTAAGAGCATTATGAGAAG  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGTGAGGCTTTGGCATTTAGAATTCTAAGTAAGAGCATTATGAGAAG  950

seq1  AAATTAGGCCTATAAGTCAAGTTACCTGTGCAGGAGGGCCTGATGAGAGG  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGGCCTATAAGTCAAGTTACCTGTGCAGGAGGGCCTGATGAGAGG  1000

seq1  CGTTTCTTTCTTCCTCTCTTCCTCTTCATGCTTGGGCCATCAGCTGAAAG  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCTTTCTTCCTCTCTTCCTCTTCATGCTTGGGCCATCAGCTGAAAG  1050

seq1  AGAAACCATTTAAAGGTTGAAATATATAAAACATTGCCAGGTGGTTATGG  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCATTTAAAGGTTGAAATATATAAAACATTGCCAGGTGGTTATGG  1100

seq1  TATACATCTTTAATCCCAGTCCTTGGTAGGTAGGTAGAACCAGGTGGAAC  1128
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATCTTTAATCCCAGTCCTTGGTAGGTAGGTAGAACCAGGTGGAAC  1150

seq1  TCTGAGTTCAAGGCCAGCCTGATCTTCAGAGTGAATTC  1166
      ||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTCAAGGCCAGCCTGATCTTCAGAGTGAATTC  1188

seq1: chr14_59892236_59893317
seq2: B6Ng01-204H01.g_67_1165

seq1  GAATTCATTAACATTTAAAAACATATTTTGAGTAAATAGACTCACATCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAACATTTAAAAACATATTTTGAGTAAATAGACTCACATCAC  50

seq1  ATGCTCCTTTCTTTTTTGTACCCCAACTCCTCCTGGAGACCCCCTTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCTTTCTTTTTTGTACCCCAACTCCTCCTGGAGACCCCCTTTAAA  100

seq1  ACCTGAAATACCTTTCATTTTTATCATATTCTTTTTTTAAAGATTTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAATACCTTTCATTTTTATCATATTCTTTTTTTAAAGATTTATTT  150

seq1  ATCAATTATATGTAAGTACACTGTAGCTTTCTTAAGACACTCCAGAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTATATGTAAGTACACTGTAGCTTTCTTAAGACACTCCAGAAGAG  200

seq1  GGCACCAGAACTCGTTACAGATGGTAGTGAGCCACTATGTGGTTGTTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCAGAACTCGTTACAGATGGTAGTGAGCCACTATGTGGTTGTTGGG  250

seq1  ATTTGAACTTTGGACCTTCAGGAGAGCAGTCAGTGCTCTTACTCGCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAACTTTGGACCTTCAGGAGAGCAGTCAGTGCTCTTACTCGCTGAG  300

seq1  CCATCTTGCCAGCCCCCATATTCTTTAAAATTTATAAAATACTGTAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTGCCAGCCCCCATATTCTTTAAAATTTATAAAATACTGTAACAA  350

seq1  TGAAAATGAGTATTGCAAAAGTTGTTTCATATAAAACAACAATCAATTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATGAGTATTGCAAAAGTTGTTTCATATAAAACAACAATCAATTGA  400

seq1  ACAGTCTTATGTAGATGCTTGTCTACAGCAATAGTGAAAATAAATGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTTATGTAGATGCTTGTCTACAGCAATAGTGAAAATAAATGTTTT  450

seq1  TCTCAATATAAATTTTAAATAACTCCAAATATTTTAACTGTATGATATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATATAAATTTTAAATAACTCCAAATATTTTAACTGTATGATATTT  500

seq1  TAAAATAATTTATCACTATTAGTTGTTGGTTTATTTTTTTTAGTTTTTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAATTTATCACTATTAGTTGTTGGTTTATTTTTTTTAGTTTTTCG  550

seq1  AGACAGGATTTCTCTGTATAGCCCTGGCTGTTCTGGAACTCACTGTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGATTTCTCTGTATAGCCCTGGCTGTTCTGGAACTCACTGTCTCT  600

seq1  ATATAGACAAGGCTGTGCTTGAACTCAGAAATTCACCTACCTCTGCCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGACAAGGCTGTGCTTGAACTCAGAAATTCACCTACCTCTGCCTTC  650

seq1  GAAGTGCTGGGATTAAAGGCATGCACCACCATGCCGGGCTATACTCTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGCTGGGATTAAAGGCATGCACCACCATGCCGGGCTATACTCTTAG  700

seq1  TATTTTTAATGAACATAAAGTCTGTTTGTTTGTTTTGTTTTGTTTTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAATGAACATAAAGTCTGTTTGTTTGTTTTGTTTTGTTTTGTTT  750

seq1  TTAGTAGAGCTTAAAATCTTGGCTTTTACTGTGGTACAAACAC-AAAATA  799
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTAGTAGAGCTTAAAATCTTGGCTTTTACTGTGGTACAAACACAAAAATA  800

seq1  ACAA-TTTTTGGACATTGGAGTTCACTGTAAAAAGG-CTGTACATCAATG  847
      |||| ||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACAATTTTTTGGACATTGGAGTTCACTGTAAAAAGGCCTGTACATCAATG  850

seq1  TCA-TTCACATCACCAAAGGA-TTTTACCTCCATAGTAGATAAGCTAAGA  895
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCATTTCACATCACCAAAGGATTTTTACCTCCATAGTAGATAAGCTAAGA  900

seq1  GTTGCCAG-TTCTGCTGCACCAAGG-AATGAATTATAGGCACAGTTTTT-  942
      |||||||| |||||||||||||||| ||||||||||| ||||||||||| 
seq2  GTTGCCAGTTTCTGCTGCACCAAGGAAATGAATTATAAGCACAGTTTTTG  950

seq1  GGATACA-GATTTCC-TGCTATGTTC-AACCTATTTCACTTGCA-TGATG  988
      ||||||| ||||||| |||||||||| ||| ||||||||||||| |||||
seq2  GGATACAGGATTTCCTTGCTATGTTCAAACTTATTTCACTTGCATTGATG  1000

seq1  GTTGTCATTC-TCAGCCCATAGGTAACAGTTTAC-ATTCATTTAATAAAT  1036
      | |||||||| |||  |||||| |||||||| || |||||||| |||| |
seq2  GATGTCATTCTTCAAGCCATAGTTAACAGTTAACAATTCATTT-ATAATT  1049

seq1  GGTCTG-TGTATTAAGATGA-TCT-ATCCATGAAGTC-ATTCATCAACTG  1082
      | |||| |||| | |||||| ||| |||||||| ||| ||||||||||||
seq2  GCTCTGATGTAATTAGATGATTCTAATCCATGAGGTCAATTCATCAACTG  1099