BAC Information

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BAC

Clone NameB6Ng01-204M15
Chromosome14 (Build37)
Map Location 42,647,888 - 42,841,701
singlet/doubletdoublet
Overlap geneLOC666228, LOC666233, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910
Upstream geneSh2d4b, Tspan14, 5730469M10Rik, Dydc2, EG622782, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726
Downstream geneLOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204M15.bB6Ng01-204M15.g
ACCGA024636GA024637
length597955
definitionB6Ng01-204M15.b B6Ng01-204M15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,841,149 - 42,841,701)(42,647,888 - 42,648,835)
sequence
tatcaaaagattttgttgtgcaaatattgttgcttaacttaaaaccattg
gtaaaataaaattggctactggtgtttactggagggattagacatatgtg
aggttttagttatctggttgtgggtggagaagtgaaagaaaagaggagaa
actagaaaaaatggagaatgcaccatggatgagctgcaccatgagggcat
atggaggagaaacagcaaggatttggggtgcaccactggaaaggtagcca
ggtgagctgttagaaaagcaaattaggggtcaccccacccaacataattg
tctctatttttgtttttttaagacagggttccctgtatatccctggctgt
cctggaactcactttgtagatcagactggcctcaaactcagaaattctcc
ggcctctgcctcacaagtgctgggagtaaaagtgagcaccaccacctcac
agtaatcatcaagccaaatgatataagcacagtctgagtcatttgtttgg
aagcaagtcaggatgagtttacattggttctactaaaactttgtctcaaa
actgaaggtgatggggaaggagaagagcatttgcctgaaggggaggg
gaattccagatacagcctttttgcacatgatacttgattgcttagttcag
aggatgatttactctttgggccatgctctaccacaggatgaacactgaat
tcaccatcattaaatcacaacatgagaagacaatgttggatatggagaaa
atgacgcagtcaataagtgataccattgagaagtacaaggaattcataga
agataacgattcctacaggtgagtcccagacacagctgagacccagcact
aggcagggaatgcttgtggccttctgggactttgtacaaaagtaagagct
ctagttctatactctctgtttcttaataggagccctcccttgagtcatgg
gtcttggatttgtacctcttggactcagttttcctaagtgtgaatattgt
ccaagaccctccagtctttattcttccaaattcaggatcttctgcatcga
aaccatttccaccatgctgggaatctcaagcaaccctgaacttctagggt
tctgacagcagattacaagatctgggatccatgacaaaaatggaaagagt
ttataccttttgggtctttctctctccctaagagggcattgccctctccc
ttactgatggtttttctggtactacacacatatgagcaaaccatgaggaa
gttttcctcttctgtgatgtatatggaacactcttggtgtagggttatca
gaaatattttgagacttgttacatgtggctggtctctggatttgacctgc
ctctattttggtacttatggatatacagtggactctagtctcgggctttc
tggggatcagagcccttgcagggatcataatatttggaagagtggcaggc
aaatcgaagataggtgggaaatcaacatttatgttttatttgtttgtggt
tcagcatcaggcacacccaccttcctgaaagaatgcaatcaattgaagaa
aaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_42841149_42841701
seq2: B6Ng01-204M15.b_92_645 (reverse)

seq1  CCCTCCCCTTCAGGC-AATGCTCTTCTCCTTCCCCATCACCTTCAGTTTT  49
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCTTCAGGCAAATGCTCTTCTCCTTCCCCATCACCTTCAGTTTT  50

seq1  GAGACAAAGTTTTAGTAGAACCAATGTAAACTCATCCTGACTTGCTTCCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAAGTTTTAGTAGAACCAATGTAAACTCATCCTGACTTGCTTCCA  100

seq1  AACAAATGACTCAGACTGTGCTTATATCATTTGGCTTGATGATTACTGTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATGACTCAGACTGTGCTTATATCATTTGGCTTGATGATTACTGTG  150

seq1  AGGTGGTGGTGCTCACTTTTACTCCCAGCACTTGTGAGGCAGAGGCCGGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTGGTGCTCACTTTTACTCCCAGCACTTGTGAGGCAGAGGCCGGA  200

seq1  GAATTTCTGAGTTTGAGGCCAGTCTGATCTACAAAGTGAGTTCCAGGACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCTGAGTTTGAGGCCAGTCTGATCTACAAAGTGAGTTCCAGGACA  250

seq1  GCCAGGGATATACAGGGAACCCTGTCTTAAAAAAACAAAAATAGAGACAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGATATACAGGGAACCCTGTCTTAAAAAAACAAAAATAGAGACAA  300

seq1  TTATGTTGGGTGGGGTGACCCCTAATTTGCTTTTCTAACAGCTCACCTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTGGGTGGGGTGACCCCTAATTTGCTTTTCTAACAGCTCACCTGG  350

seq1  CTACCTTTCCAGTGGTGCACCCCAAATCCTTGCTGTTTCTCCTCCATATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTTCCAGTGGTGCACCCCAAATCCTTGCTGTTTCTCCTCCATATG  400

seq1  CCCTCATGGTGCAGCTCATCCATGGTGCATTCTCCATTTTTTCTAGTTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATGGTGCAGCTCATCCATGGTGCATTCTCCATTTTTTCTAGTTTC  450

seq1  TCCTCTTTTCTTTCACTTCTCCACCCACAACCAGATAACTAAAACCTCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTTCTTTCACTTCTCCACCCACAACCAGATAACTAAAACCTCAC  500

seq1  ATATGTCTAATCCCTCCAGTAAACACCAGTAGCCAATTTTATTTTACCAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCTAATCCCTCCAGTAAACACCAGTAGCCAATTTTATTTTACCAA  550

seq1  TGGT  553
      ||||
seq2  TGGT  554

seq1: chr14_42647888_42648835
seq2: B6Ng01-204M15.g_71_1025

seq1  GAATTCCAGATACAGCCTTTTTGCACATGATACTTGATTGCTTAGTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATACAGCCTTTTTGCACATGATACTTGATTGCTTAGTTCAG  50

seq1  AGGATGATTTACTCTTTGGGCCATGCTCTACCACAGGATGAACACTGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGATTTACTCTTTGGGCCATGCTCTACCACAGGATGAACACTGAAT  100

seq1  TCACCATCATTAAATCACAACATGAGAAGACAATGTTGGATATGGAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATCATTAAATCACAACATGAGAAGACAATGTTGGATATGGAGAAA  150

seq1  ATGACGCAGTCAATAAGTGATACCATTGAGAAGTACAAGGAATTCATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACGCAGTCAATAAGTGATACCATTGAGAAGTACAAGGAATTCATAGA  200

seq1  AGATAACGATTCCTACAGGTGAGTCCCAGACACAGCTGAGACCCAGCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACGATTCCTACAGGTGAGTCCCAGACACAGCTGAGACCCAGCACT  250

seq1  AGGCAGGGAATGCTTGTGGCCTTCTGGGACTTTGTACAAAAGTAAGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGGAATGCTTGTGGCCTTCTGGGACTTTGTACAAAAGTAAGAGCT  300

seq1  CTAGTTCTATACTCTCTGTTTCTTAATAGGAGCCCTCCCTTGAGTCATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCTATACTCTCTGTTTCTTAATAGGAGCCCTCCCTTGAGTCATGG  350

seq1  GTCTTGGATTTGTACCTCTTGGACTCAGTTTTCCTAAGTGTGAATATTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGATTTGTACCTCTTGGACTCAGTTTTCCTAAGTGTGAATATTGT  400

seq1  CCAAGACCCTCCAGTCTTTATTCTTCCAAATTCAGGATCTTCTGCATCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACCCTCCAGTCTTTATTCTTCCAAATTCAGGATCTTCTGCATCGA  450

seq1  AACCATTTCCACCATGCTGGGAATCTCAAGCAACCCTGAACTTCTAGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTTCCACCATGCTGGGAATCTCAAGCAACCCTGAACTTCTAGGGT  500

seq1  TCTGACAGCAGATTACAAGATCTGGGATCCATGACAAAAATGGAAAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAGCAGATTACAAGATCTGGGATCCATGACAAAAATGGAAAGAGT  550

seq1  TTATACCTTTTGGGTC-TTCTCTCTCCCTAAGAGGGCATTGCCCTCTCCC  599
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTATACCTTTTGGGTCTTTCTCTCTCCCTAAGAGGGCATTGCCCTCTCCC  600

seq1  -TACTGATGG-TTTTCTGGTACTACACACATATGAGC-AACCATGAGGAA  646
       ||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  TTACTGATGGTTTTTCTGGTACTACACACATATGAGCAAACCATGAGGAA  650

seq1  GTTTTCCTCTTCTGTGATGTATATGGAACACTCTTGGTGTAGGGTTATCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTCTTCTGTGATGTATATGGAACACTCTTGGTGTAGGGTTATCA  700

seq1  GAAATATTTTGAGACTTGTTACATGTGGCTGGTCTCTGGATTTGACCTGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATTTTGAGACTTGTTACATGTGGCTGGTCTCTGGATTTGACCTGC  750

seq1  CTCTA-TTTGGTACTTATGGATATACAGTGGACTCTAGTCTCGGGCTTTC  795
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTTTGGTACTTATGGATATACAGTGGACTCTAGTCTCGGGCTTTC  800

seq1  TGGGGATCAGAGCCCTTGCAGGGATCATAATATTTGGAAGAGTGGCAGGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATCAGAGCCCTTGCAGGGATCATAATATTTGGAAGAGTGGCAGGC  850

seq1  AAATCGAAGATAGGTGGG-AATCAACATTTATGTTTTATTTGTTTGTGGT  894
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAATCGAAGATAGGTGGGAAATCAACATTTATGTTTTATTTGTTTGTGGT  900

seq1  TCAGCATCAGGCACACCCACC-TCCTGAAAGAATGCAATCAATTGAAGAA  943
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCAGCATCAGGCACACCCACCTTCCTGAAAGAATGCAATCAATTGAAGAA  950

seq1  AAAAA  948
      |||||
seq2  AAAAA  955