BAC Information

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BAC

Clone NameB6Ng01-206D09
Chromosome14 (Build37)
Map Location 44,003,096 - 44,086,291
singlet/doubletdoublet
Overlap geneLOC666492, 1700001F09Rik, LOC673380, LOC100042326
Upstream geneLOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik
Downstream geneEG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206D09.bB6Ng01-206D09.g
ACCGA025685GA025686
length1,113774
definitionB6Ng01-206D09.b B6Ng01-206D09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,085,283 - 44,086,291)(44,003,096 - 44,003,848)
sequence
gaattccccattccctgatttcagggctagttcttagcctgctggcctcc
tccatgctcagctcctctgagacttctagcagtgcctgcatgtccaagat
tctgagaaccccttgcccagttatccttgcaggccagcagggtcaaacct
gctgtgaactctctgcaacacagcactgtctggatgtccaggattttgtg
ggtccctgtccccagactcctaaacatagtcccgtgaaattcagaacaat
atactacccaatgaaaagcccagggccaagtttgggttatcttgttttgg
gttgctcatcattgagtctcaaacactctccccaatcattaaagactatt
gccatttccttccttcttttctggaagataatgataagaacacattgctg
aagaagatggtatctggcacaggcatcaattcagggatctatctcattat
tttctgtgtgttgagaacatatttatcactcttttgcagttacttggaga
tatttggcccattacaacccaccaaatttctatagacgtggtaatccctt
ggtagctgagattgcaactccctgtcccccatcaccctcccaacatctgt
cttaagatctggcaactgtggggcggcgccatcttcagctccagacagcc
ggccaccttcctggtgagagcacaggggtctgcccggcctgagaggtttg
tgtcacaggcgctggcgggagccttcttggctctgggacttcgcggaggg
caggctgcacgggagaccgtgtggaatacagaggccagccgtttctggta
tgggcgagagtctcagagcttctgggcggcgccatcttcggctccagaca
accgggccaccttcctggcgagacccacagagcttctgaggcggtgacat
cttcgactccagacaaccggccaccttcctggccaaagcaacacagcttc
tgggaaagatcctgttttgggccttcaccttcagccaggaggaggtccaa
acaccagaataactgtacaactttccccgaaagaggaagagcttgcctgc
agagactgcctctgaccactgaaactcagaggaaaagagccttgtcctcc
cacgcctgcagat
gaattcctcccttcaaatttgtatcactttgatcggcatttttgcctgat
tgctctggctaaaatgtcaaagactatgttgaatacataggggaagaggg
ggaagtctttccttgtctctgtactctgcacagagttcacagcaaatttc
aatgcggattatgaaagtagaaaatgttcactttggtttattacattcac
cttgttttggcagataatccatgcaggaaggctgagaaagggctaagaaa
gtaagttgatctcagagaaacaggaggactgtgggtgctctagtgtagtg
tggtgtggtgtggtgcagtgtgttgtggtgaagtgtagtgtattctcctg
cagtgtttgctgcttggtatgcatgaggccctgggctccctctttagttt
agcccctctttagtttagcccacttagagaagctgaaattagaataacag
ttgccagatcttaagacagaagttgggagggtgatgggacacagggagtt
gcaatctcggctaccaagggattatcacttctatagaaatttggtgggtt
acaatgggccaaatatctccaagtaactgcaaaaagagtaataaatatgt
tctcaacacacagaaaaatactgagatagatgcctgaattgatacctgtg
ccagataccatcttctttcagcaatgtgttcttaccattatctttccaga
aaggaaggaagagcaatggcatcagtcttttaatgattgggggagagtgt
atgagactcatgatgaccaacccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_44085283_44086291
seq2: B6Ng01-206D09.b_142_1158 (reverse)

seq1  ATCTGCAGGCGTGGGA-GACAA-GCTC-TCTCCTCTGAGTTTCAGTGGTC  47
      |||||||||||||||| ||||| |||| | ||||||||||||||||||||
seq2  ATCTGCAGGCGTGGGAGGACAAGGCTCTTTTCCTCTGAGTTTCAGTGGTC  50

seq1  AGA-GCAGTCTCTGCAGGCAAGCTC-TCCTCTTTCGGGG-AAGGTGTACA  94
      ||| ||||||||||||||||||||| ||||||||||||| ||| ||||||
seq2  AGAGGCAGTCTCTGCAGGCAAGCTCTTCCTCTTTCGGGGAAAGTTGTACA  100

seq1  GTTA-TCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGCCCAAAAC  143
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGCCCAAAAC  150

seq1  AGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCGGTTG  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCGGTTG  200

seq1  TCTGGAGTCGAAGATGTCACCGCCTCAGAAGCTCTGTGGGTCTCGCCAGG  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTCGAAGATGTCACCGCCTCAGAAGCTCTGTGGGTCTCGCCAGG  250

seq1  AAGGTGG-CCGGTTGTCTGGAGCCGAAGATGGCGCCGCCCAGAAGCTCTG  292
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGCCCGGTTGTCTGGAGCCGAAGATGGCGCCGCCCAGAAGCTCTG  300

seq1  AGACTCTCGCCCATACCAGAAACGGCTGGCCTCTGTATTCCACACGGTCT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTCGCCCATACCAGAAACGGCTGGCCTCTGTATTCCACACGGTCT  350

seq1  CCCGTGCAGCCTGCCCTCCGCGAAGTCCCAGAGCCAAGAAGGCTCCCGCC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGCAGCCTGCCCTCCGCGAAGTCCCAGAGCCAAGAAGGCTCCCGCC  400

seq1  AGCGCCTGTGACACAAACCTCTCAGGCCGGGCAGACCCCTGTGCTCTCAC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCCTGTGACACAAACCTCTCAGGCCGGGCAGACCCCTGTGCTCTCAC  450

seq1  CAGGAAGGTGGCCGGCTGTCTGGAGCTGAAGATGGCGCCGCCCCACAGTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGTGGCCGGCTGTCTGGAGCTGAAGATGGCGCCGCCCCACAGTT  500

seq1  GCCAGATCTTAAGACAGATGTTGGGAGGGTGATGGGGGACAGGGAGTTGC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATCTTAAGACAGATGTTGGGAGGGTGATGGGGGACAGGGAGTTGC  550

seq1  AATCTCAGCTACCAAGGGATTACCACGTCTATAGAAATTTGGTGGGTTGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAGCTACCAAGGGATTACCACGTCTATAGAAATTTGGTGGGTTGT  600

seq1  AATGGGCCAAATATCTCCAAGTAACTGCAAAAGAGTGATAAATATGTTCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGCCAAATATCTCCAAGTAACTGCAAAAGAGTGATAAATATGTTCT  650

seq1  CAACACACAGAAAATAATGAGATAGATCCCTGAATTGATGCCTGTGCCAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACACAGAAAATAATGAGATAGATCCCTGAATTGATGCCTGTGCCAG  700

seq1  ATACCATCTTCTTCAGCAATGTGTTCTTATCATTATCTTCCAGAAAAGAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATCTTCTTCAGCAATGTGTTCTTATCATTATCTTCCAGAAAAGAA  750

seq1  GGAAGGAAATGGCAATAGTCTTTAATGATTGGGGAGAGTGTTTGAGACTC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAATGGCAATAGTCTTTAATGATTGGGGAGAGTGTTTGAGACTC  800

seq1  AATGATGAGCAACCCAAAACAAGATAACCCAAACTTGGCCCTGGGCTTTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGAGCAACCCAAAACAAGATAACCCAAACTTGGCCCTGGGCTTTT  850

seq1  CATTGGGTAGTATATTGTTCTGAATTTCACGGGACTATGTTTAGGAGTCT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGTAGTATATTGTTCTGAATTTCACGGGACTATGTTTAGGAGTCT  900

seq1  GGGGACAGGGACCCACAAAATCCTGGACATCCAGACAGTGCTGTGTTGCA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACAGGGACCCACAAAATCCTGGACATCCAGACAGTGCTGTGTTGCA  950

seq1  GAGAGTTCACAGCAGGTTTGACCCTGCTGGCCTGCAAGGATAACTGGGCA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTCACAGCAGGTTTGACCCTGCTGGCCTGCAAGGATAACTGGGCA  1000

seq1  AGGGGTTCTCAGAATCT  1009
      |||||||||||||||||
seq2  AGGGGTTCTCAGAATCT  1017

seq1: chr14_44003096_44003848
seq2: B6Ng01-206D09.g_66_839

seq1  GAATTCCTCCCTTCAAATTTGTATCACTTTGATCGGCATTTTTGCCTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCCTTCAAATTTGTATCACTTTGATCGGCATTTTTGCCTGAT  50

seq1  TGCTCTGGCTAAAATGTCAAAGACTATGTTGAATACATAGGGGAAGAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGGCTAAAATGTCAAAGACTATGTTGAATACATAGGGGAAGAGGG  100

seq1  GGAAGTCTTTCCTTGTCTCTGTACTCTGCACAGAGTTCACAGCAAATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCTTTCCTTGTCTCTGTACTCTGCACAGAGTTCACAGCAAATTTC  150

seq1  AATGCGGATTATGAAAGTAGAAAATGTTCACTTTGGTTTATTACATTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCGGATTATGAAAGTAGAAAATGTTCACTTTGGTTTATTACATTCAC  200

seq1  CTTGTTTTGGCAGATAATCCATGCAGGAAGGCTGAGAAAGGGCTAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTGGCAGATAATCCATGCAGGAAGGCTGAGAAAGGGCTAAGAAA  250

seq1  GTAAGTTGATCTCAGAGAAACAGGAGGACTGTGGGTGCTCTAGTGTAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTGATCTCAGAGAAACAGGAGGACTGTGGGTGCTCTAGTGTAGTG  300

seq1  TGGTGTGGTGTGGTGCAGTGTGTTGTGGTGAAGTGTAGTGTATTCTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGGTGTGGTGCAGTGTGTTGTGGTGAAGTGTAGTGTATTCTCCTG  350

seq1  CAGTGTTTGCTGCTTGGTATGCATGAGGCCCTGGGCT-------------  387
      |||||||||||||||||||||||||||||||||||||             
seq2  CAGTGTTTGCTGCTTGGTATGCATGAGGCCCTGGGCTCCCTCTTTAGTTT  400

seq1  ---CCCTCTTTAGTTTAGCCCACTTAGAGAAGCTGAAATTAGAATAACAG  434
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTCTTTAGTTTAGCCCACTTAGAGAAGCTGAAATTAGAATAACAG  450

seq1  TTGCCAGATCTTAAGACAGAAGTTGGGAGGGTGATGGGACACAGGGAGTT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGATCTTAAGACAGAAGTTGGGAGGGTGATGGGACACAGGGAGTT  500

seq1  GCAATCTCGGCTACCAAGGGATTATCACTTCTATAGAAATTTGGTGGGTT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCTCGGCTACCAAGGGATTATCACTTCTATAGAAATTTGGTGGGTT  550

seq1  ACAATGGGCCAAATATCTCCAAGTAACTGC-AAAAGAGTAATAAATATGT  583
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACAATGGGCCAAATATCTCCAAGTAACTGCAAAAAGAGTAATAAATATGT  600

seq1  TCTCAACACACAG-AAAATACTGAGATAGATGCCTGAATTGATACCTGTG  632
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCTCAACACACAGAAAAATACTGAGATAGATGCCTGAATTGATACCTGTG  650

seq1  CCAGATACCATCTTC-TTCAGCAATGTGTTCTTACCATTATC-TTCCAGA  680
      ||||||||||||||| |||||||||||||||||||||||||| |||||||
seq2  CCAGATACCATCTTCTTTCAGCAATGTGTTCTTACCATTATCTTTCCAGA  700

seq1  AAGGAAGGAAGAGCAATGGCATCAGTC-TTTAATGATT-GGGGAGAGTGT  728
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  AAGGAAGGAAGAGCAATGGCATCAGTCTTTTAATGATTGGGGGAGAGTGT  750

seq1  ATGAGACTCAATGATGACCAACCCC  753
      ||||||||| |||||||||||||||
seq2  ATGAGACTC-ATGATGACCAACCCC  774