BAC Information

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BAC

Clone NameB6Ng01-206M24
Chromosome14 (Build37)
Map Location 37,904,578 - 37,905,536
singlet/doubletsinglet
Overlap genePcdh21
Upstream gene4930474N05Rik, Gcap14, LOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22
Downstream gene2610528A11Rik, Ghitm, LOC382871, LOC382872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206M24.bB6Ng01-206M24.g
ACCGA026132GA026133
length1,184965
definitionB6Ng01-206M24.b B6Ng01-206M24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagaactcatcagctggggaacgacggtgataaaggttcccgtaa
agcagactgttaagaaggattcaactgtatgaattcagaacttttcagct
ggggaacgagagtaccagtgagtatgtttggccttgaattttttctggtg
ttaggagcccttttgttccttttcacatgttatatagtgcttaaggcagg
gctgaaaattctagaggaaattcaggacaagctatcagaagtaaagcggg
aagaaagagtaggaacaaagagaaaatatggttcacaaaataagtataca
ggcctttccaagggtcttgaacccgaggaaaagttaaggttaggtaggaa
tacctggagagagattagaagaaaaagaggaaaaagggagaagaaaaaag
atcgattagcggaggtctctaggagatactcgtcactagatgagctcagg
aagccagctcttagtagctctgaagcagatgaagaatcctcctctgagga
aacagactgggaggaagaagcagcccattaccagccagctaatcggtcaa
gaaaaaagccaaaagcggctggcgaaggccagtttgctaattggcctcag
ggcaatcggctaccaggtgcactcccgccctatgcggagtccccgccctg
cgtagtgcgtcagcccgtagtgcgtcagcaatgcgcagagaggcagtgcg
cagactcattcattccccgagaggaacaaaggaaaatagaacaggcattt
ccagtctttgaaggagccgagggtgggcgtgtccacgctccggtagaata
cgtacagattaaggaaattgccgagtcggttcgtaaatacggaaccaatg
ctaattttaccttggcgcagttagacaggctcgctggcatggcactaact
cctgccgattggcagacggttgtaaaagccgctctccctagtaatgggca
aatatatgggaatgggaaagccgctttggcacggaagctgcacaggccgc
aaggcctcggagcaacgcagctgcttttgactccaggagccagagagatt
ggaccttttgattgtacggtcaaggaagctattctgctgatcgaacaaac
tacatggggagcttatgcccagatttctcacggctataggcttgagccgc
tcctctccagacaagggtgaaacacactgtgtag
gaattctgagagcagttgaccgaatatggaaagaagaggaggaagtgctg
cccataagcagcagccatgtgagggtggacagctgtccctgggagaccag
gagaaggcagaggtacaggggagaagcctccatctttgccaaaatagtga
gaatggatgggagtgagggctggggcatcccagctctctttttggtgtag
ttccttctcctccttttcttattgactatttcagtcctaaatggacttct
tgcatccttggtggatgccaaatgtccaggatttctttaaagaaaggaat
ggggcaactagagagctgagggttccagaatcctagaaggggggcaggga
ctgggacaactatgcagaagccaagatgggcctatgggaggaagaggtct
tctatttctttcggctctttgaacctgtggagtaccctggagaacagaaa
ctctagcaggcatatgggggttagctggtgaaggagtggaagacacccag
atgccctctccatctcaaggccctggatgcatcctttgtgccccatctta
cctgaagggagtaggtgacactgcctccagagcctgtgtccttgtcctct
gcctggaccttaaagatgctgctcccagcaggtatgttctgaggggtcac
agacagagaagtgtcagtgtcagtgacaagatggtgggagaggcagaggc
atgtggggccatggaactgaggggtcatgactgactaaagaatagtgagg
agcagtgacaaacaaatcaccccagcaagaatggagagggacagggacag
tgggcctgaggcaaaggaggcaaggtaagaaagtcagaggatgtcctcaa
ggagagaatgagaaggaaaagctaggtcccctaagagctaagggttttaa
aagaaaatattaatttataaacaaagacaaagctcatattcaggaatatt
aaatataggacatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_37904578_37905536
seq2: B6Ng01-206M24.g_68_1032

seq1  GAATTCTGAGAGCAGTTGACCGAATATGGAAAGAAGAGGAGGAAGTGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGAGCAGTTGACCGAATATGGAAAGAAGAGGAGGAAGTGCTG  50

seq1  CCCATAAGCAGCAGCCATGTGAGGGTGGACAGCTGTCCCTGGGAGACCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAAGCAGCAGCCATGTGAGGGTGGACAGCTGTCCCTGGGAGACCAG  100

seq1  GAGAAGGCAGAGGTACAGGGGAGAAGCCTCCATCTTTGCCAAAATAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGCAGAGGTACAGGGGAGAAGCCTCCATCTTTGCCAAAATAGTGA  150

seq1  GAATGGATGGGAGTGAGGGCTGGGGCATCCCAGCTCTCTTTTTGGTGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGATGGGAGTGAGGGCTGGGGCATCCCAGCTCTCTTTTTGGTGTAG  200

seq1  TTCCTTCTCCTCCTTTTCTTATTGACTATTTCAGTCCTAAATGGACTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTCCTCCTTTTCTTATTGACTATTTCAGTCCTAAATGGACTTCT  250

seq1  TGCATCCTTGGTGGATGCCAAATGTCCAGGATTTCTTTAAAGAAAGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCTTGGTGGATGCCAAATGTCCAGGATTTCTTTAAAGAAAGGAAT  300

seq1  GGGGCAACTAGAGAGCTGAGGGTTCCAGAATCCTAGAAGGGGGGCAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAACTAGAGAGCTGAGGGTTCCAGAATCCTAGAAGGGGGGCAGGGA  350

seq1  CTGGGACAACTATGCAGAAGCCAAGATGGGCCTATGGGAGGAAGAGGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACAACTATGCAGAAGCCAAGATGGGCCTATGGGAGGAAGAGGTCT  400

seq1  TCTATTTCTTTCGGCTCTTTGAACCTGTGGAGTACCCTGGAGAACAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTCTTTCGGCTCTTTGAACCTGTGGAGTACCCTGGAGAACAGAAA  450

seq1  CTCTAGCAGGCATATGGGGGTTAGCTGGTGAAGGAGTGGAAGACACCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCAGGCATATGGGGGTTAGCTGGTGAAGGAGTGGAAGACACCCAG  500

seq1  ATGCCCTCTCCATCTCAAGGCCCTGGATGCATCCTTTGTGCCCCATCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTCTCCATCTCAAGGCCCTGGATGCATCCTTTGTGCCCCATCTTA  550

seq1  CCTGAAGGGAGTAGGTGACACTGCCTCCAGAGCCTGTGTCCTTGTCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGGGAGTAGGTGACACTGCCTCCAGAGCCTGTGTCCTTGTCCTCT  600

seq1  GCCTGGACCTTAAAGATGCTGCTCCCAGCAGGTATGTTCTGAGGGGTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGACCTTAAAGATGCTGCTCCCAGCAGGTATGTTCTGAGGGGTCAC  650

seq1  AGACAGAGAAGTGTCAGTGTCAGTGACAAGATGGTGGGAGAGGCAGAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGAAGTGTCAGTGTCAGTGACAAGATGGTGGGAGAGGCAGAGGC  700

seq1  ATG-GGGGCCATGGAACTGAGGGGTCATGACTGACTAAAGAATAGTGAGG  749
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGGCCATGGAACTGAGGGGTCATGACTGACTAAAGAATAGTGAGG  750

seq1  AGCAGTGACAAACAAATCA-CCCAGCAAGAATGGAGAGGGACAGGGACAG  798
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGCAGTGACAAACAAATCACCCCAGCAAGAATGGAGAGGGACAGGGACAG  800

seq1  TGGGCCTGAGGCAAAGGAGGCAAGGTAAG-AAGTCAGAGGATGTCCTCAA  847
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGGGCCTGAGGCAAAGGAGGCAAGGTAAGAAAGTCAGAGGATGTCCTCAA  850

seq1  GGAGAGAATGAGAAGGAAAAGCTAGG-CCCCTAAGAGCTAAAGGATTTAA  896
      |||||||||||||||||||||||||| |||||||||||||| || |||||
seq2  GGAGAGAATGAGAAGGAAAAGCTAGGTCCCCTAAGAGCTAAGGGTTTTAA  900

seq1  AAGAAAATATTAATTTATAAACAAAGACAAAGCTCATATTCAGGATTA-T  945
      ||||||||||||||||||||||||||||||||||||||||||||| || |
seq2  AAGAAAATATTAATTTATAAACAAAGACAAAGCTCATATTCAGGAATATT  950

seq1  AAATATA-GACATAT  959
      ||||||| |||||||
seq2  AAATATAGGACATAT  965