BAC Information

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BAC

Clone NameB6Ng01-208B18
Chromosome14 (Build37)11 (Build37)
Map Location 13,905,067 - 13,905,115103,587,236 - 103,588,414
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePtprg, 3830406C13Rik, EG667072, Fezf2, Cadps, EG432822, LOC100042022, LOC100042026
Downstream geneEG328354, Synpr, A430083B19Rik, EG382844, LOC100042045, Gm281, Thoc7, Atxn7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208B18.bB6Ng01-208B18.g
ACCGA027077GA027078
length3331,180
definitionB6Ng01-208B18.b B6Ng01-208B18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(13,905,067 - 13,905,115)(103,587,236 - 103,588,414)
sequence
attgcagttcagttgatggcagttcaggtcatggagttcaaaggcacttt
ttactaggacagttttatggagaaaggttgcagaaagaacaagctaaaaa
caggtgatgacaagacaagtcagagaatgaggagccaaaagattagaaca
gaatgctatagttagtttgaggccaagcagagcaattcagccagaagccg
agaaaaactagcgtgaatcagtcagcttggagaggagtttgaatcagaac
agctaataagttaaaccagccagccagagttcaaaaagagctagcaagag
tgagtttattcaacagtaaacctctgagatgac
gaattcccagtgtgtaccattactacaccgtggtttcaggggattgaact
caggtcctgtatgtgcacgataactactttcctgacggggccatctccca
gtcttatttgtcctctcttgccttggcttgtggcaatatttttgcccagt
agaggctgccacctgacccggctaaggagtaaaggtcgtgaggtgggaag
gctcctcagggccaccagcaggcagcagagccagactgaaaacaggggtc
cttccctcctctcatctccacatctcctcttgggtaagtagggcaggaat
gcaccccttgctatgaattctgggtaaatgaggcctagtgtaaagtggtt
atccaacccaggctgtccatcaaatcagaccaggccaaacatatgagcag
aggcccccactctgcggcctgccacatggggagaatgcaagtagtcgaaa
acaaagcggtagccttcaggaatctgggacctgaaatgaaaaacaaaaag
aacagagatgcaataatggatggggccccttatggtttagctccagagtc
ccattgcatcctgggggtctggaacaagggaggtagaagcagggagtggg
ggcagagagttcttatctctgagctcagacacaccctgtgccctgtccca
ggtcttcaggccccctagggttctcagggagggaggcagtcctgagggta
gccatgtttctccctgtatccccatcctaacatgtttgaggccctgtgct
cttgggcatggactccagctggttctgagctagcgacagaaggctccaca
cacagtaagcaggctttagtttgtccagggctttatcatctgtttcgctt
gagccccacctggtacatggcttcatccctcttcaacagccaggagaaaa
tgaggctggagtggttaactgttcctttctgccaagtgactcaactttca
attgtcttcttgcctttctgccccatgttgccttctgcttcctcacccga
cttgagaactttcctgctcctaacttcagaagttcaaacagtccctgggg
gcctctccaattttcagaacttttgaatcaaggccggcaattcttttcta
cggaaactagagaacaggcatgctgatgcaatcactgagaatctaccaga
caatctcccttttaaaaaccaataacagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_13905067_13905115
seq2: B6Ng01-208B18.b_268_387 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  GTCATCTCAGAGGTTTACTGTTGAATAAACTCACTCTTGCTAGCTCTTTT  50

seq1  -----------------GT----CATCTCAGCTGTTCTGGCTCAAACTCC  29
                       ||    | | | ||||||||||  |||||||||
seq2  TGAACTCTGGCTGGCTGGTTTAACTTATTAGCTGTTCTGATTCAAACTCC  100

seq1  TCTCCAAGCTGACTGATTCA  49
      ||||||||||||||||||||
seq2  TCTCCAAGCTGACTGATTCA  120

seq1: chr11_103587236_103588414
seq2: B6Ng01-208B18.g_68_1247 (reverse)

seq1  TTCTGTT-TTGGTTTTT-AAAGGGAGGATGTCCTGGGTAGGAATTCCTCT  48
      | ||||| ||||||||| ||||||||  ||||   |||||  ||| ||| 
seq2  TACTGTTATTGGTTTTTAAAAGGGAGATTGTC--TGGTAG--ATT-CTC-  44

seq1  AGTGATTTCACTCAACAAGCCCTGGTCTCCTAG-TTCCGTAG-AAAGAA-  95
      ||||||| || ||| || | |||| ||| |||| |||||||| |||||| 
seq2  AGTGATTGCA-TCAGCATG-CCTGTTCT-CTAGTTTCCGTAGAAAAGAAT  91

seq1  TGGCGGCTTTGGATTC-AAAGGTCTGAAAA-TGGAGA-GCCCCCAGGGCC  142
      || |||| || ||||| |||| |||||||| |||||| |||||||||| |
seq2  TGCCGGCCTT-GATTCAAAAGTTCTGAAAATTGGAGAGGCCCCCAGGGAC  140

seq1  TGGTTTGGAC-TCTGAAG-TAGGAGCAGGAAAG-TCTCAAGTCGGGTGAG  189
      | ||||| || ||||||| |||||||||||||| ||||||||||||||||
seq2  T-GTTTGAACTTCTGAAGTTAGGAGCAGGAAAGTTCTCAAGTCGGGTGAG  189

seq1  GAGGCAGAAGGCAACATGGGGCAGAAAGGGCAAAGAAGACAA-TGAAAGT  238
      || ||||||||||||||||||||||||||   |||||||||| |||||||
seq2  GAAGCAGAAGGCAACATGGGGCAGAAAGG--CAAGAAGACAATTGAAAGT  237

seq1  TGAGTCACCTTGGCAG-AAGGAACAGTTAACCACTCCAGCCTCA-TTTCT  286
      ||||||| |||||||| ||||||||||||||||||||||||||| |||||
seq2  TGAGTCA-CTTGGCAGAAAGGAACAGTTAACCACTCCAGCCTCATTTTCT  286

seq1  CCTGGCTG-TGAAGAGGGATGAAGCCATGTACCAGGTGGGGCTCAAGCGA  335
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGTTGAAGAGGGATGAAGCCATGTACCAGGTGGGGCTCAAGCGA  336

seq1  AACAGATGATAAAGCCCTGGACAAACTAAAGCCTGCTTACTGTGTGTGGA  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATGATAAAGCCCTGGACAAACTAAAGCCTGCTTACTGTGTGTGGA  386

seq1  GCCTTCTGTCGCTAGCTCAGAACCAGCTGGAGTCCATGCCCAAGAGCACA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTGTCGCTAGCTCAGAACCAGCTGGAGTCCATGCCCAAGAGCACA  436

seq1  GGGCCTCAAACATGTTAGGATGGGGATACAGGGAGAAACATGGCTACCCT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCAAACATGTTAGGATGGGGATACAGGGAGAAACATGGCTACCCT  486

seq1  CAGGACTGCCTCCCTCCCTGAGAACCCTAGGGGGCCTGAAGACCTGGGAC  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTGCCTCCCTCCCTGAGAACCCTAGGGGGCCTGAAGACCTGGGAC  536

seq1  AGGGCACAGGGTGTGTCTGAGCTCAGAGATAAGAACTCTCTGCCCCCACT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACAGGGTGTGTCTGAGCTCAGAGATAAGAACTCTCTGCCCCCACT  586

seq1  CCCTGCTTCTACCTCCCTTGTTCCAGACCCCCAGGATGCAATGGGACTCT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTTCTACCTCCCTTGTTCCAGACCCCCAGGATGCAATGGGACTCT  636

seq1  GGAGCTAAACCATAAGGGGCCCCATCCATTATTGCATCTCTGTTCTTTTT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTAAACCATAAGGGGCCCCATCCATTATTGCATCTCTGTTCTTTTT  686

seq1  GTTTTTCATTTCAGGTCCCAGATTCCTGAAGGCTACCGCTTTGTTTTCGA  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCATTTCAGGTCCCAGATTCCTGAAGGCTACCGCTTTGTTTTCGA  736

seq1  CTACTTGCATTCTCCCCATGTGGCAGGCCGCAGAGTGGGGGCCTCTGCTC  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGCATTCTCCCCATGTGGCAGGCCGCAGAGTGGGGGCCTCTGCTC  786

seq1  ATATGTTTGGCCTGGTCTGATTTGATGGACAGCCTGGGTTGGATAACCAC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTGGCCTGGTCTGATTTGATGGACAGCCTGGGTTGGATAACCAC  836

seq1  TTTACACTAGGCCTCATTTACCCAGAATTCATAGCAAGGGGTGCATTCCT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACTAGGCCTCATTTACCCAGAATTCATAGCAAGGGGTGCATTCCT  886

seq1  GCCCTACTTACCCAAGAGGAGATGTGGAGATGAGAGGAGGGAAGGACCCC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTACTTACCCAAGAGGAGATGTGGAGATGAGAGGAGGGAAGGACCCC  936

seq1  TGTTTTCAGTCTGGCTCTGCTGCCTGCTGGTGGCCCTGAGGAGCCTTCCC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAGTCTGGCTCTGCTGCCTGCTGGTGGCCCTGAGGAGCCTTCCC  986

seq1  ACCTCACGACCTTTACTCCTTAGCCGGGTCAGGTGGCAGCCTCTACTGGG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACGACCTTTACTCCTTAGCCGGGTCAGGTGGCAGCCTCTACTGGG  1036

seq1  CAAAAATATTGCCACAAGCCAAGGCAAGAGAGGACAAATAAGACTGGGAG  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATATTGCCACAAGCCAAGGCAAGAGAGGACAAATAAGACTGGGAG  1086

seq1  ATGGCCCCGTCAGGAAAGTAGTTATCGTGCACATACAGGACCTGAGTTCA  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCCCGTCAGGAAAGTAGTTATCGTGCACATACAGGACCTGAGTTCA  1136

seq1  ATCCCCTGAAACCACGGTGTAGTAATGGTACACACTGGGAATTC  1179
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTGAAACCACGGTGTAGTAATGGTACACACTGGGAATTC  1180