BAC Information

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BAC

Clone NameB6Ng01-208J14
Chromosome14 (Build37)
Map Location 44,325,130 - 44,449,380
singlet/doubletdoublet
Overlap geneLOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12
Upstream geneLOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300
Downstream geneEar-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402, BC061237, LOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725, EG624966, EG666744
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208J14.bB6Ng01-208J14.g
ACCGA027436GA027437
length1,1161,161
definitionB6Ng01-208J14.b B6Ng01-208J14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,325,130 - 44,326,246)(44,448,220 - 44,449,380)
sequence
gaattcactcagatagtatatttattattgagaaatatctcttacattca
ccatccctagagatttggatgctaacaaaaatctcttatgcatgtcaggg
tcctaatcaatgcttcccatcgaaagcacttgtcttctaatgaagcagat
gagaaagctctgaatttagaaagagatattaccatagggtatttgccagg
ttacaggagaggctccaggaaaggcacaacagaaactggtcaatttgagg
agaactagatatcaaataggccttagcctttcccagtgacatcatcagta
atgtcttccttggacactctattgtaactaggagagaactagaatcttct
gtgacgtcacctgtgttgtggttacaacaactgcttgtgggatattcctt
cagtgccttttgggttctcaatcaggcatgttttcctggctgcgcaggct
atttcacagggagaatggcgatcaaggagagacaagaccaaggcagaagg
aatctgccatcccttcttgtaaaaaaagaagaatgaaatcattctgggga
aggcacagtgagtgctgggcagagttggggaaatttctggaacaggtagg
cttgagctgagtcttccctgagtagatattaagagctggagccttggact
ttcttaatgacagaccaagagactagaatttctgacaattaatttgacag
aggcaggaattgacaagcctgcagctccttttctagtcactatttaattt
catttaaagtgtcaaagaatgccatgagaaggcactatgagaataacaat
gtgtcccttagtggtagggagttgaagcacttcatcttctagattattgt
aggatacatgagtctctgatgcagagaacagaggaggattctaacctggt
catctgttgaggtctcagtcactttgagtttgaacacacatgactaggta
ttgatgggtgctaagccactatgaacttcagtttttctgcatacatatga
catgagctgaaattgtttccccaattgtcctataatatgaggcaggttat
ggatttcagagcaggggtatgtatagaatgtgtgggtttagttgtgacca
caatggtggttgggaa
gaattcttttgcagtgttaaaagaaaatttgctcttgctgtttcctaaga
attaaggtcctggggtcacaggatgctgagtcatggtataatcaaaagaa
aacttagagagctgtctagagatctccagagaaagcagatctaagagaga
gagaaaaatcagaacacagaggaagcaggttggaaaactgtctccagcag
aacataggatgccagcttagacccaagatttgattttgaggggtttgttt
ttgctgctctcagacactctttgtctcagaacccatcaccaacctgaggc
tggtccttggcagaatctgcacttttcacataaaactacatttggggaac
ttcagggattgacataatctagttatttgagatgaaattgggtacagtct
aagagtcttcattatgtagctctggatgtcctggaacttactttgtagac
caggctggttttgaactcacaaaaatacttttcaatttttactcataatt
ttgttacctaaggctattttcaagacctggtaagaaacaagtttttgttt
gttcaagaatcattcaggtctggtatagatcttaaaattactttaattct
cctggtaggtcatggttagatttaccatcaagcacagcaaaaataacaat
ggaggaacagggctatcaatgtgtgctaaattatctatttaccaacagaa
cttaaacagcaagaaactcagaagtcaagctttctgcagagtgtgagggg
caggaaaggaataataacacataggggaaccaatgtgtgttttgtacaga
aagcatctcccaggcccgcatatgacagaatcaactgtgtaaacgacagg
aatccatgaagttcagacccttgcttagggaggttaagaagcaatggttt
cctggcagtgcttcagaggaagagtgttaatcagaggcagaatacaaacc
taagatccacaacctctgttgtacagaatgtgactgttgggaggcaggac
tgggaactggtgggtcccatcagaattcattctccaagcctaataggact
tggaatccatgcaatagattagagcagcatggtgtccagaagttcaaaca
gaacttgtgggcctgcaacatagctcagttgcattgctgcctacctgtac
gaatcctgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_44325130_44326246
seq2: B6Ng01-208J14.b_48_1163

seq1  GAATTCACTCAGATAGTATATTTATTATTGAGAAATATCTCTTACATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCAGATAGTATATTTATTATTGAGAAATATCTCTTACATTCA  50

seq1  CCATCCCTAGAGATTTGGATGCTAACAAAAATCTCTTATGCATGTCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCTAGAGATTTGGATGCTAACAAAAATCTCTTATGCATGTCAGGG  100

seq1  TCCTAATCAATGCTTCCCATCGAAAGCACTTGTCTTCTAATGAAGCAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATCAATGCTTCCCATCGAAAGCACTTGTCTTCTAATGAAGCAGAT  150

seq1  GAGAAAGCTCTGAATTTAGAAAGAGATATTACCATAGGGTATTTGCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGCTCTGAATTTAGAAAGAGATATTACCATAGGGTATTTGCCAGG  200

seq1  TTACAGGAGAGGCTCCAGGAAAGGCACAACAGAAACTGGTCAATTTGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGAGAGGCTCCAGGAAAGGCACAACAGAAACTGGTCAATTTGAGG  250

seq1  AGAACTAGATATCAAATAGGCCTTAGCCTTTCCCAGTGACATCATCAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTAGATATCAAATAGGCCTTAGCCTTTCCCAGTGACATCATCAGTA  300

seq1  ATGTCTTCCTTGGACACTCTATTGTAACTAGGAGAGAACTAGAATCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTCCTTGGACACTCTATTGTAACTAGGAGAGAACTAGAATCTTCT  350

seq1  GTGACGTCACCTGTGTTGTGGTTACAACAACTGCTTGTGGGATATTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACGTCACCTGTGTTGTGGTTACAACAACTGCTTGTGGGATATTCCTT  400

seq1  CAGTGCCTTTTGGGTTCTCAATCAGGCATGTTTTCCTGGCTGCGCAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCTTTTGGGTTCTCAATCAGGCATGTTTTCCTGGCTGCGCAGGCT  450

seq1  ATTTCACAGGGAGAATGGCGATCAAGGAGAGACAAGACCAAGGCAGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACAGGGAGAATGGCGATCAAGGAGAGACAAGACCAAGGCAGAAGG  500

seq1  AATCTGCCATCCCTTCTTGTAAAAAAAGAAGAATGAAATCATTCTGGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCCATCCCTTCTTGTAAAAAAAGAAGAATGAAATCATTCTGGGGA  550

seq1  AGGCACAGTGAGTGCTGGGCAGAGTTGGGGAAATTTCTGGAACAGGTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAGTGAGTGCTGGGCAGAGTTGGGGAAATTTCTGGAACAGGTAGG  600

seq1  CTTGAGCTGAGTCTTCCCTGAGTAGATATTAAGAGCTGGAGCCTTGGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCTGAGTCTTCCCTGAGTAGATATTAAGAGCTGGAGCCTTGGACT  650

seq1  TTCTTAATGACAGACCAAGAGACTAGAATTTCTGACAATTAATTTGACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAATGACAGACCAAGAGACTAGAATTTCTGACAATTAATTTGACAG  700

seq1  AGGCAGGAATTGACAAGCCTGCAGCTCCTTTTCTAGTCACTATTTAATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAATTGACAAGCCTGCAGCTCCTTTTCTAGTCACTATTTAATTT  750

seq1  CATTTAAAGTGTCAAAGAATGCCATGAGAAGGCACTATGAGAATAACAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAAGTGTCAAAGAATGCCATGAGAAGGCACTATGAGAATAACAAT  800

seq1  GTGTCCCTTAGTGGTAGGGAGTTGAAGCACTTCATCTTCTAGATTATTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCTTAGTGGTAGGGAGTTGAAGCACTTCATCTTCTAGATTATTGT  850

seq1  AGGATACATGAGTCTCTGATGCAGAGAACAGAGGAGGATTCTAACCTGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATACATGAGTCTCTGATGCAGAGAACAGAGGAGGATTCTAACCTGGT  900

seq1  CATCTGTTGAGGTCTCAGTCACTTTGAGTTTGAACACACATGACTAGGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTTGAGGTCTCAGTCACTTTGAGTTTGAACACACATGACTAGGTA  950

seq1  TTGAT-GGTGCTAAG-CACTATGAACTTCAGGTTTTCTTGGCATAACATA  998
      ||||| ||||||||| ||||||||||||||| ||||||  |||| |||||
seq2  TTGATGGGTGCTAAGCCACTATGAACTTCAGTTTTTCT--GCAT-ACATA  997

seq1  TGACATGAGCTGAAAATG-TTCCCCAAATGT-CTAT-ATATGAGGCAGGT  1045
      ||||||||||||||| || |||||||| ||| |||| |||||||||||||
seq2  TGACATGAGCTGAAATTGTTTCCCCAATTGTCCTATAATATGAGGCAGGT  1047

seq1  TATGGATTTCAGAGCAAGGGGTAATGTAATAAAGAGTGTGTG-TTAGTTG  1094
      ||||||||||||||| |||||| |||| ||| |  ||||| | |||||||
seq2  TATGGATTTCAGAGC-AGGGGT-ATGT-ATAGAATGTGTGGGTTTAGTTG  1094

seq1  TGACCAACAATGGTGGTTGGGAA  1117
      ||||| |||||||||||||||||
seq2  TGACC-ACAATGGTGGTTGGGAA  1116

seq1: chr14_44448220_44449380
seq2: B6Ng01-208J14.g_67_1227 (reverse)

seq1  ACCCAGGATTCTGTACAGGGTAGGCAAGCACTGCAAACTGAGCTATGTTC  50
      ||||||||||| ||||| ||||||| |||| ||| |||||||||||||| 
seq2  ACCCAGGATTC-GTACA-GGTAGGC-AGCAATGC-AACTGAGCTATGTTG  46

seq1  CAAGCCCCCACAAG-TCTGTTGTAAC-TCTGGACCACCATGCCTGCTCTA  98
      || |  |||||||| ||||||  ||| |||||| ||||||| ||||||||
seq2  CAGG--CCCACAAGTTCTGTTTGAACTTCTGGA-CACCATG-CTGCTCTA  92

seq1  ATCTATTGCATGGA-TCCAAGTCTTATTAGGCTTGGAGAATGAATTCCTG  147
      |||||||||||||| |||||||| |||||||||||||||||||||| |||
seq2  ATCTATTGCATGGATTCCAAGTCCTATTAGGCTTGGAGAATGAATT-CTG  141

seq1  ATTGGAACCCACAGTT-CCAGTCCTGCCTCCCAACAGTCACATTCTGTAC  196
      || ||| ||  ||||| |||||||||||||||||||||||||||||||||
seq2  ATGGGACCCACCAGTTCCCAGTCCTGCCTCCCAACAGTCACATTCTGTAC  191

seq1  AACAGAG--TGTGGATCTTAGG-TTGTA-TCTGCCTCTGATTAACACTCT  242
      |||||||  ||||||||||||| ||||| |||||||||||||||||||||
seq2  AACAGAGGTTGTGGATCTTAGGTTTGTATTCTGCCTCTGATTAACACTCT  241

seq1  TCCTCTG-AGCACTGCCAGGAAACCATTGCTTCTTAACCTCCCTAAGCAA  291
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGAAGCACTGCCAGGAAACCATTGCTTCTTAACCTCCCTAAGCAA  291

seq1  GGGTCTGAACTTCATGGATTCCTGTCGTTTACACAGTTGATTCTGTCATA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGAACTTCATGGATTCCTGTCGTTTACACAGTTGATTCTGTCATA  341

seq1  TGCGGGCCTGGGAGATGCTTTCTGTACAAAACACACATTGGTTCCCCTAT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGGCCTGGGAGATGCTTTCTGTACAAAACACACATTGGTTCCCCTAT  391

seq1  GTGTTATTATTCCTTTCCTGCCCCTCACACTCTGCAGAAAGCTTGACTTC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTATTATTCCTTTCCTGCCCCTCACACTCTGCAGAAAGCTTGACTTC  441

seq1  TGAGTTTCTTGCTGTTTAAGTTCTGTTGGTAAATAGATAATTTAGCACAC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTCTTGCTGTTTAAGTTCTGTTGGTAAATAGATAATTTAGCACAC  491

seq1  ATTGATAGCCCTGTTCCTCCATTGTTATTTTTGCTGTGCTTGATGGTAAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATAGCCCTGTTCCTCCATTGTTATTTTTGCTGTGCTTGATGGTAAA  541

seq1  TCTAACCATGACCTACCAGGAGAATTAAAGTAATTTTAAGATCTATACCA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACCATGACCTACCAGGAGAATTAAAGTAATTTTAAGATCTATACCA  591

seq1  GACCTGAATGATTCTTGAACAAACAAAAACTTGTTTCTTACCAGGTCTTG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGAATGATTCTTGAACAAACAAAAACTTGTTTCTTACCAGGTCTTG  641

seq1  AAAATAGCCTTAGGTAACAAAATTATGAGTAAAAATTGAAAAGTATTTTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGCCTTAGGTAACAAAATTATGAGTAAAAATTGAAAAGTATTTTT  691

seq1  GTGAGTTCAAAACCAGCCTGGTCTACAAAGTAAGTTCCAGGACATCCAGA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCAAAACCAGCCTGGTCTACAAAGTAAGTTCCAGGACATCCAGA  741

seq1  GCTACATAATGAAGACTCTTAGACTGTACCCAATTTCATCTCAAATAACT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATAATGAAGACTCTTAGACTGTACCCAATTTCATCTCAAATAACT  791

seq1  AGATTATGTCAATCCCTGAAGTTCCCCAAATGTAGTTTTATGTGAAAAGT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATGTCAATCCCTGAAGTTCCCCAAATGTAGTTTTATGTGAAAAGT  841

seq1  GCAGATTCTGCCAAGGACCAGCCTCAGGTTGGTGATGGGTTCTGAGACAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTCTGCCAAGGACCAGCCTCAGGTTGGTGATGGGTTCTGAGACAA  891

seq1  AGAGTGTCTGAGAGCAGCAAAAACAAACCCCTCAAAATCAAATCTTGGGT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTCTGAGAGCAGCAAAAACAAACCCCTCAAAATCAAATCTTGGGT  941

seq1  CTAAGCTGGCATCCTATGTTCTGCTGGAGACAGTTTTCCAACCTGCTTCC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTGGCATCCTATGTTCTGCTGGAGACAGTTTTCCAACCTGCTTCC  991

seq1  TCTGTGTTCTGATTTTTCTCTCTCTCTTAGATCTGCTTTCTCTGGAGATC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTCTGATTTTTCTCTCTCTCTTAGATCTGCTTTCTCTGGAGATC  1041

seq1  TCTAGACAGCTCTCTAAGTTTTCTTTTGATTATACCATGACTCAGCATCC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGACAGCTCTCTAAGTTTTCTTTTGATTATACCATGACTCAGCATCC  1091

seq1  TGTGACCCCAGGACCTTAATTCTTAGGAAACAGCAAGAGCAAATTTTCTT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACCCCAGGACCTTAATTCTTAGGAAACAGCAAGAGCAAATTTTCTT  1141

seq1  TTAACACTGCAAAAGAATTC  1161
      ||||||||||||||||||||
seq2  TTAACACTGCAAAAGAATTC  1161