BAC Information

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BAC

Clone NameB6Ng01-208M12
Chromosome14 (Build37)
Map Location 21,342,991 - 21,461,259
singlet/doubletdoublet
Overlap genePpp3cb, Usp54
Upstream geneLOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17
Downstream geneMyoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1, Adk, Myst4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208M12.bB6Ng01-208M12.g
ACCGA027569GA027570
length1,1041,147
definitionB6Ng01-208M12.b B6Ng01-208M12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,460,155 - 21,461,259)(21,342,991 - 21,344,156)
sequence
gaattcactatgtagatctgggtggccttgcaagagatctacttctctct
gcctaccaagttctgggactaaaggcatgagccaccacacctggcctgat
ttgaaactgatgcggttaaaaataccagtgaaatcaattttgttaataat
gtagcaagtggaacatttaagttgtacactgtagttagccatatatgttt
ttacttgacagaactgaatgcacctcacgaaaatttctcaagggcttcga
gaggtaaacattcttcccaattctattgtcctgctcatcccttgtgtttc
attcctccttgttgaccaggattcggtaaatccttctgcttcattgccat
agagcagagacacccctggaagtccagattctgaggatgtaagcagaggc
ccgcgaccagcaagtgcaaatcctactcctgtgagattccagttgcatgc
cacagctaaacaccttaggtctgtcttttttcgctctcttttttcctctc
tctctctctttctttctttcttgtttgtgcgtgggcctgtgacttatttc
ctattttggtctcgaaaattgatggggcggggcacccgggataaactttt
ccgaggaagcaaagtaagtttggcagacggtagaacggatgaaaaaattc
ctgaaggtaacctggaggtgaggaggtcaatttcgggcctacccactcca
tctccagcaattcgacacgaggggaaaatgtcagggaaacggaacctgag
gtaagcggttctcggtgcgaggaggaaggagcgagcgcacagcccaagtt
tagttcagcagagagtctgccataataactgtccccggcgggagcagacc
accggctggccggcgttcttcgactccatcagaacagttggccttcgccc
gggtctttcccggctcaccctgagccgcgccgccgccgccgccgccatct
tacacacgattatcgcgatacgtcctcagccgtcagtcgccaggctcatt
ttccagcgagtctcttttccacggttctcgtcggcgccgagggaggtatc
gcgagagttggtgccttgcctccctgtagctatagcagccgcggccgttg
agga
gaattcttaccctgcatcttgagcttcatgagctctaataatcgataaca
aattattgttttgcaaaaattcacacactgctggatagctgtaggggaaa
agagtaaattaagtaaaataattcttttcgtatgaaacataaacttctta
tacaaaaaaaaatgtgattaatcttggatgtttttccttacttataaaaa
taagaacatcctcgaactgtattatgactaaaatgttcttgtgatttttc
atttccaaagtcttcagaaggatcagaccatagcaagtcacacattggtc
caaatgcaggtggctctttaaatctatctaactgtgaaataaaagacata
aagaaataacttctcaagtaaagacaaaatgcacataagtgaccccaact
ttgagtatagtatgtactacagtgttctaaatcaccaagagctatttcct
tgaatcagtctactaaccagtatataaatttttatcattatctaatctca
ccagtgaaaataaatttgatgcttttaaagactctataatcaaaaatatt
gttaacaggaaccaacttcagaagctagttatactcactctcctaatatc
atccagtgtgtgtatttctggtgaaagtccaccatgaacacaaagaaatt
gttggtttagaagtgcagcaaggggcaagctgtcaaaagcctccatacaa
gcttcatagactctttctgaatatttaattttacctagagaaagaagaat
attagcatttgaaaattctttgctattttaagaatgttttatttttacat
ttatttagttgtgtatgtacgtgtgtacacacaagtgtatggcatatatg
aaaattacagagcaacttgcgagattcaattctctttctacacatgggtt
tggactaccaaactcagattatcagcttggtggcaagtgtctttacctgc
tgagccatctcacagacccagttattctttacatatacagcatactagat
ttttcctattctcttttataatatttatactgtttttcattttagtgcgt
ttgatagctagttcactgttataggattttctaactgactactgtagcta
aacagggagcacagaaaaattcagttgtagtcatcagtagtctaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_21460155_21461259
seq2: B6Ng01-208M12.b_44_1147 (reverse)

seq1  TCCTCAACCGCCGCGGCTGCTATAGCTACAGGGAGCCAAGGCAACCAACT  50
      |||||||| |||||||||||||||||||||||||| |||||| |||||||
seq2  TCCTCAACGGCCGCGGCTGCTATAGCTACAGGGAGGCAAGGC-ACCAACT  49

seq1  CTCGCGATACCTCCCTCGGCGCCGACGAGAACCGTGGAAAAGAGACTCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCGATACCTCCCTCGGCGCCGACGAGAACCGTGGAAAAGAGACTCGC  99

seq1  TGGAAAATGAGCCTGGCGACTGACGGCTGAGGACGTATCGCGATAATCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAATGAGCCTGGCGACTGACGGCTGAGGACGTATCGCGATAATCGT  149

seq1  GTGTAAGATGGCGGCGGCGGCGGCGGCGCGGCTCAGGGTGAGCCGGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAGATGGCGGCGGCGGCGGCGGCGCGGCTCAGGGTGAGCCGGGAAA  199

seq1  GACCCGGGCGAAGGCCAACTGTTCTGATGGAGTCGAAGAACGCCGGCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCGGGCGAAGGCCAACTGTTCTGATGGAGTCGAAGAACGCCGGCCAG  249

seq1  CCGGTGGTCTGCTCCCGCCGGGGACAGTTATTATGGCAGACTCTCTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTGGTCTGCTCCCGCCGGGGACAGTTATTATGGCAGACTCTCTGCTG  299

seq1  AACTAAACTTGGGCTGTGCGCTCGCTCCTTCCTCCTCGCACCGAGAACCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAACTTGGGCTGTGCGCTCGCTCCTTCCTCCTCGCACCGAGAACCG  349

seq1  CTTACCTCAGGTTCCGTTTCCCTGACATTTTCCCCTCGTGTCGAATTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTCAGGTTCCGTTTCCCTGACATTTTCCCCTCGTGTCGAATTGCT  399

seq1  GGAGATGGAGTGGGTAGGCCCGAAATTGACCTCCTCACCTCCAGGTTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGAGTGGGTAGGCCCGAAATTGACCTCCTCACCTCCAGGTTACC  449

seq1  TTCAGGAATTTTTTCATCCGTTCTACCGTCTGCCAAACTTACTTTGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAATTTTTTCATCCGTTCTACCGTCTGCCAAACTTACTTTGCTTC  499

seq1  CTCGGAAAAGTTTATCCCGGGTGCCCCGCCCCATCAATTTTCGAGACCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGAAAAGTTTATCCCGGGTGCCCCGCCCCATCAATTTTCGAGACCAA  549

seq1  AATAGGAAATAAGTCACAGGCCCACGCACAAACAAGAAAGAAAGAAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAAATAAGTCACAGGCCCACGCACAAACAAGAAAGAAAGAAAGAG  599

seq1  AGAGAGAGAGGAAAAAAGAGAGCGAAAAAAGACAGACCTAAGGTGTTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGGAAAAAAGAGAGCGAAAAAAGACAGACCTAAGGTGTTTAG  649

seq1  CTGTGGCATGCAACTGGAATCTCACAGGAGTAGGATTTGCACTTGCTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCATGCAACTGGAATCTCACAGGAGTAGGATTTGCACTTGCTGGT  699

seq1  CGCGGGCCTCTGCTTACATCCTCAGAATCTGGACTTCCAGGGGTGTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGGCCTCTGCTTACATCCTCAGAATCTGGACTTCCAGGGGTGTCTCT  749

seq1  GCTCTATGGCAATGAAGCAGAAGGATTTACCGAATCCTGGTCAACAAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTATGGCAATGAAGCAGAAGGATTTACCGAATCCTGGTCAACAAGGA  799

seq1  GGAATGAAACACAAGGGATGAGCAGGACAATAGAATTGGGAAGAATGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAAACACAAGGGATGAGCAGGACAATAGAATTGGGAAGAATGTTT  849

seq1  ACCTCTCGAAGCCCTTGAGAAATTTTCGTGAGGTGCATTCAGTTCTGTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCGAAGCCCTTGAGAAATTTTCGTGAGGTGCATTCAGTTCTGTCA  899

seq1  AGTAAAAACATATATGGCTAACTACAGTGTACAACTTAAATGTTCCACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAACATATATGGCTAACTACAGTGTACAACTTAAATGTTCCACTT  949

seq1  GCTACATTATTAACAAAATTGATTTCACTGGTATTTTTAACCGCATCAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATTATTAACAAAATTGATTTCACTGGTATTTTTAACCGCATCAGT  999

seq1  TTCAAATCAGGCCAGGTGTGGTGGCTCATGCCTTTAGTCCCAGAACTTGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATCAGGCCAGGTGTGGTGGCTCATGCCTTTAGTCCCAGAACTTGG  1049

seq1  TAGGCAGAGAGAAGTAGATCTCTTGCAAGGCCACCCAGATCTACATAGTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAGAGAGAAGTAGATCTCTTGCAAGGCCACCCAGATCTACATAGTG  1099

seq1  AATTC  1105
      |||||
seq2  AATTC  1104

seq1: chr14_21342991_21344156
seq2: B6Ng01-208M12.g_63_1209

seq1  GAATTCTTACCCTGCATCTTGAGCTTCATGAGCTCTAATAATCGATAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACCCTGCATCTTGAGCTTCATGAGCTCTAATAATCGATAACA  50

seq1  AATTATTGTTTTGCAAAAATTCACACACTGCTGGATAGCTGTAGGGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTGTTTTGCAAAAATTCACACACTGCTGGATAGCTGTAGGGGAAA  100

seq1  AGAGTAAATTAAGTAAAATAATTCTTTTCGTATGAAACATAAACTTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAATTAAGTAAAATAATTCTTTTCGTATGAAACATAAACTTCTTA  150

seq1  TACAAAAAAAAATGTGATTAATCTTGGATGTTTTTCCTTACTTATAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAAAAAATGTGATTAATCTTGGATGTTTTTCCTTACTTATAAAAA  200

seq1  TAAGAACATCCTCGAACTGTATTATGACTAAAATGTTCTTGTGATTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACATCCTCGAACTGTATTATGACTAAAATGTTCTTGTGATTTTTC  250

seq1  ATTTCCAAAGTCTTCAGAAGGATCAGACCATAGCAAGTCACACATTGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAAAGTCTTCAGAAGGATCAGACCATAGCAAGTCACACATTGGTC  300

seq1  CAAATGCAGGTGGCTCTTTAAATCTATCTAACTGTGAAATAAAAGACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCAGGTGGCTCTTTAAATCTATCTAACTGTGAAATAAAAGACATA  350

seq1  AAGAAATAACTTCTCAAGTAAAGACAAAATGCACATAAGTGACCCCAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATAACTTCTCAAGTAAAGACAAAATGCACATAAGTGACCCCAACT  400

seq1  TTGAGTATAGTATGTACTACAGTGTTCTAAATCACCAAGAGCTATTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTATAGTATGTACTACAGTGTTCTAAATCACCAAGAGCTATTTCCT  450

seq1  TGAATCAGTCTACTAACCAGTATATAAATTTTTATCATTATCTAATCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCAGTCTACTAACCAGTATATAAATTTTTATCATTATCTAATCTCA  500

seq1  CCAGTGAAAATAAATTTGATGCTTTTAAAGACTCTATAATCAAAAATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAAAATAAATTTGATGCTTTTAAAGACTCTATAATCAAAAATATT  550

seq1  GTTAACAGGAACCAACTTCAGAAGCTAGTTATACTCACTCTCCTAATATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACAGGAACCAACTTCAGAAGCTAGTTATACTCACTCTCCTAATATC  600

seq1  ATCCAGTGTGTGTATTTCTGGTGAAAGTCCACCATGAACACAAAGAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTGTGTGTATTTCTGGTGAAAGTCCACCATGAACACAAAGAAATT  650

seq1  GTTGGTTTAGAAGTGCAGCAAGGGGCAAGCTGTCAAAAGCCTCCATACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTTAGAAGTGCAGCAAGGGGCAAGCTGTCAAAAGCCTCCATACAA  700

seq1  GCTTCATAGACTCTTTCTGAATATTTAATTTTACCTAGAGAAAGAAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATAGACTCTTTCTGAATATTTAATTTTACCTAGAGAAAGAAGAAT  750

seq1  ATTAGCATTTGAAAATTCTTTGCTATTTTAAGAATGTTTTATTTTTACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCATTTGAAAATTCTTTGCTATTTTAAGAATGTTTTATTTTTACAT  800

seq1  TTATTTAGTTGTGTATGTACGTGTGTACACACAAGTGTATGGCATATATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAGTTGTGTATGTACGTGTGTACACACAAGTGTATGGCATATATG  850

seq1  AAAATTACAGAGCAACTTGCGAGATTCAATTCTCTTTCTACACATGGGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTACAGAGCAACTTGCGAGATTCAATTCTCTTTCTACACATGGGTT  900

seq1  TGGACTACCAAACTCAGATTATCAGGCTTGGTGGCAAGTGTCTTTACCTG  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGGACTACCAAACTCAGATTATCA-GCTTGGTGGCAAGTGTCTTTACCTG  949

seq1  CTGAGCCATCTCACAGACCCAGTTATTCTTTACATATACAGCAATACTAG  1000
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTGAGCCATCTCACAGACCCAGTTATTCTTTACATATACAGC-ATACTAG  998

seq1  ATTTTTCCTATTCTCTTTTATAATATTTTATACTTGTTTTTTCATTTTTA  1050
      ||||||||||||||||||||||||| ||||||||   ||||||| |||||
seq2  ATTTTTCCTATTCTCTTTTATAATA-TTTATACT--GTTTTTCA-TTTTA  1044

seq1  GTGCGTTTTGAATAGCTAGTTTCAACTGTTATAGGGAATTTTCTAAACTG  1100
      ||||||||   ||||||||||   |||||||||||  ||||||| |||||
seq2  GTGCGTTT--GATAGCTAGTT--CACTGTTATAGG--ATTTTCT-AACTG  1087

seq1  ACTACTGTAGCTAAAACAAGGGAGCACAGAAAATATCAGAGTGGTAGTCA  1150
      |||||||||||||||   |||||||||||||||  ||  ||| |||||||
seq2  ACTACTGTAGCTAAA--CAGGGAGCACAGAAAAATTC--AGTTGTAGTCA  1133

seq1  TCAGTTAGTCCTAAGT  1166
      |||| |||| ||||||
seq2  TCAG-TAGT-CTAAGT  1147