BAC Information

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BAC

Clone NameB6Ng01-209A03
Chromosome14 (Build37)
Map Location 44,004,101 - 44,052,473
singlet/doubletdoublet
Overlap geneLOC666492, 1700001F09Rik
Upstream geneLOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik
Downstream geneLOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209A03.bB6Ng01-209A03.g
ACCGA027738GA027739
length1,2481,103
definitionB6Ng01-209A03.b B6Ng01-209A03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,051,226 - 44,052,473)(44,004,101 - 44,005,004)
sequence
gaattctttttatagtgaggaattgttctgtaatcttaagagtcccatta
ccatttacagagaagaaaggggacagaagtaattgaatctcgtgggtatt
taaaaatctatactcaattaggttagggaggggagctgggaaactgatgg
gataacaatcaataaagctatggtcaggaggccattcaggtgtgaattta
tatttgtgggtgacttttctactcttaacagaatactggctgacacttgc
ctaaatatttccaccaactgacatttctcaaccacagggcatttaagctg
atttctctgcagagttggatttgaattggagagcattcacctatgtacct
gctgcccctggcagccatggttctaataatgtgagtgggaggtcacttca
ttagactgacagcaaatagtagatctttgagctccggagatatgaaaacc
tatggacctttaaattacctgaaagagcagaatggtagcaattgtaatct
aggatggtgtttgcagaggtgcctgttatgacaggtaagctttccaacta
gctatttactgttaaatgggctttaacatattcttaaatctgaagatttt
tagacagggtaaaggcaatatttttttacttgaagcatctgtagtgatgt
taaatgtcatgtaattcattttggaagatttaacaagtaagctgtgttta
ctgtagtcagcacagtaatcagtagtaaattaaggtgtactggttcatgt
ttttataaatgattttaacagtgtgagtagcagagcacatacatagatat
ttaactgacaaaattgaaagtggttgctcctgtttcttaattgatacact
gtaatacataaacacagagttattttgacaacaagcccccccccaaacat
aaaacattctacctgcacatcttcagcacctgtctaaacagcaaactaaa
cagaaatatgacagcaggtccctagtcttagatcaacctgctgccaaggc
ttcggaaggaagattcagcattgaaccctagtgaatcacagttggtgcat
tcttaaggaagtcattttaaaaagaatttcaaagtaaaagtcgaatgctt
taaaacatggaatatgttccacatggaaagaaaccaagcctcattcctta
aggaaaaaacaagattaaggtgatctattttaataacctaatgccattga
gtcaagatgcagtgtgtgtgccaataggcatagcttacgaatggtcta
gaattccacaggcctatgtttaggagtctggggacagggacccacaaaat
cctggacatccagacagtgctggggtgcagagagttcacagcaggtttga
ccctgctggcctgcaaggataacagggcaaggggttctcagaatcttaga
catgcagtcactgctagaagtctcagagaagctgagcatggaggaggcca
gcagactgagaactagccctgaaatcagggaatggggaattctggattag
ctcagaggtgactagcccaggagtattgaggggccttctgttggagactt
agatggcaaggctctgtaggcaaaggctttttctccatgtaaccacagtt
ggtttgatgagagaaacagtctttggttgtaaactgtttattgcttttca
tggaaatgaaagcataacatgtcttaaggttagactagaagttaagtaac
ttctgaggaaggaatgtccaggaagggaagcttattgactaaaccctacc
atcttctattacctcattagcagggagaaccctattctcttctaaataac
cacaggccatgttcctatataaagattttggtcccatgaaagaggcctgg
taggaagcaggtgacacttttgccatctactgtgggtctgggacttccaa
cccactcgactttaccaaattctggatatggtagtctactgtcccaggtc
ttagtctgagatttattgatatgaggaaacaccaggacatatgtttagta
tgcgggtctcagtgcctaccctccacactgacacactgtttctaacaagg
ccacaactcctaacagtaccactcccatattcaagccaccacactcctct
gcaatctcccaagacatttacctcactctgtcctactgtttcctttttct
ccttcacaaattatgtgttctattattttcttgaaatatcctcctataac
ccaacactagtgcatttaccttcctattggatactgcagtttaaatgcac
atctctagacattcgatgttgccatccacataagacacatcatgtgattt
ttctctttgggtgtgagttatatcactcagaaaagattaatcaatgtctc
cat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_44051226_44052473
seq2: B6Ng01-209A03.b_28_1275 (reverse)

seq1  TAGA-CATTCGTAAGCACTGCAGATGTGGGCACACACA-TGCATCTTTGC  48
      |||| |||||||||||  |||   | | |||||||||| ||||||||   
seq2  TAGACCATTCGTAAGCTATGC--CTATTGGCACACACACTGCATCTT--G  46

seq1  ACTCAAATGACATATAGTGTTATTAAAATTAGAATCACCTTTAATCTTGT  98
      |||| |||| ||| ||| |||||||||| ||| |||||| ||||||||||
seq2  ACTC-AATGGCAT-TAG-GTTATTAAAA-TAG-ATCACC-TTAATCTTGT  90

seq1  TTTTTCCTTAGAGAAATGAGG-TTGGTTTTCTTCCTTGGGGAAACAATAT  147
      |||||||||| || ||||||| |||||||  |||| || ||||   ||| 
seq2  TTTTTCCTTA-AGGAATGAGGCTTGGTTTCTTTCCATGTGGAA--CATA-  136

seq1  TTCCATGTTTT-AAGCACTTCACTTTTACTTTGAAAT--CTTTTAAAATG  194
      ||||||||||| ||||| |  ||||||||||||||||   ||||||||||
seq2  TTCCATGTTTTAAAGCATTCGACTTTTACTTTGAAATTCTTTTTAAAATG  186

seq1  ACTTCCTTAAG-ATGCACCAACTGTGATTCACTAGGGT--CATGCTGAAT  241
      ||||||||||| ||||||||||||||||||||||||||   |||||||||
seq2  ACTTCCTTAAGAATGCACCAACTGTGATTCACTAGGGTTCAATGCTGAAT  236

seq1  C-TCCTT-CGAAGCCTTGGCAGCAGGTTGATCTAAGAGTAGGGACCTGCT  289
      | ||||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  CTTCCTTCCGAAGCCTTGGCAGCAGGTTGATCTAAGACTAGGGACCTGCT  286

seq1  GTCATATTTCTGTTTAGTTTTGCTGTTTAGACAGGTGCTGAAGATGTGCA  339
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTCATATTTCTGTTTAG-TTTGCTGTTTAGACAGGTGCTGAAGATGTGCA  335

seq1  GGTAGAATGTTTTATGTTTGGGGGGGGGCTTGTTGTCAAAATAACTCTGT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAATGTTTTATGTTTGGGGGGGGGCTTGTTGTCAAAATAACTCTGT  385

seq1  GTTTATGTATTACAGTGTATGAATTAAGAAACAGGAGCAACCACTTTCAA  439
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTTTATGTATTACAGTGTATCAATTAAGAAACAGGAGCAACCACTTTCAA  435

seq1  -TTTGTCAGTTAAATATCTATGTATGTGCTCTGCTACTCACACTGTTAAA  488
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCAGTTAAATATCTATGTATGTGCTCTGCTACTCACACTGTTAAA  485

seq1  ATCATTTATAAAAACATGAACCAGTACA-CTTAATTTACTACTGATTACT  537
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATCATTTATAAAAACATGAACCAGTACACCTTAATTTACTACTGATTACT  535

seq1  GTGCTGACTACAGTAAACACAGCTTACTTGTTAAATCTTCCAAAATGAAT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGACTACAGTAAACACAGCTTACTTGTTAAATCTTCCAAAATGAAT  585

seq1  TACATGACATTTAACATCACAACAGATGCTTCAAGTAAAAAAATATTGCC  637
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TACATGACATTTAACATCACTACAGATGCTTCAAGTAAAAAAATATTGCC  635

seq1  -TTACCCTGTCTAAAAATCTTCAGATTTAAGAATATGTTAAAGCCCATTT  686
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCTGTCTAAAAATCTTCAGATTTAAGAATATGTTAAAGCCCATTT  685

seq1  AACAGTAAATAGCTAGTTGGAAAGCTTACCT-TCATAACAGGCACCTCTG  735
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AACAGTAAATAGCTAGTTGGAAAGCTTACCTGTCATAACAGGCACCTCTG  735

seq1  CAAACACCATCCTAGATTACAATTGCTACCATTCTGCTCTTTCAGGTAAT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACCATCCTAGATTACAATTGCTACCATTCTGCTCTTTCAGGTAAT  785

seq1  TTAAAGGTCCATAGGTTTTCATATCTCCGGAGCTCAAAGATCTACTATTT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGTCCATAGGTTTTCATATCTCCGGAGCTCAAAGATCTACTATTT  835

seq1  GCTGTCAGTCTAATGAAGTGACCTCCCACTCACATTATTAGAACCATGGC  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCAGTCTAATGAAGTGACCTCCCACTCACATTATTAGAACCATGGC  885

seq1  TGCCAGGGGCAGCAGGTACATAGGTGAATGCTCTCCAATTCAAATCCAAC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGGGCAGCAGGTACATAGGTGAATGCTCTCCAATTCAAATCCAAC  935

seq1  TCTGCAGAGAAATCAGCTTAAATGCCCTGTGGTTGAGAAATGTCAGTTGG  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGAGAAATCAGCTTAAATGCCCTGTGGTTGAGAAATGTCAGTTGG  985

seq1  TGGAAATATTTAGGCAAGTGTCAGCCAGTATTCTGTTAAGAGTAGAAAAG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATATTTAGGCAAGTGTCAGCCAGTATTCTGTTAAGAGTAGAAAAG  1035

seq1  TCACCCACAAATATAAATTCACACCTGAATGGCCTCCTGACCATAGCTTT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCACAAATATAAATTCACACCTGAATGGCCTCCTGACCATAGCTTT  1085

seq1  ATTGATTGTTATCCCATCAGTTTCCCAGCTCCCCTCCCTAACCTAATTGA  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTGTTATCCCATCAGTTTCCCAGCTCCCCTCCCTAACCTAATTGA  1135

seq1  GTATAGATTTTTAAATACCCACGAGATTCAATTACTTCTGTCCCCTTTCT  1185
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGATTTTTAAATACCCACGAGATTCAATTACTTCTGTCCCCTTTCT  1185

seq1  TCTCTGTAAATGGTAATGGGACTCTTAAGATTACAGAACAATTCCTCACT  1235
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTAAATGGTAATGGGACTCTTAAGATTACAGAACAATTCCTCACT  1235

seq1  ATAAAAAGAATTC  1248
      |||||||||||||
seq2  ATAAAAAGAATTC  1248

seq1: chr14_44004101_44005004
seq2: B6Ng01-209A03.g_263_1168

seq1  CCAGCAGACTGAGAACTAGCCCTGAAATCAGGGAATGGGGAATTCTGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGACTGAGAACTAGCCCTGAAATCAGGGAATGGGGAATTCTGGAT  50

seq1  TAGCTCAGAGGTGACTAGCCCAGGAGTATTGAGGGGCCTTCTGTTGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCAGAGGTGACTAGCCCAGGAGTATTGAGGGGCCTTCTGTTGGAGA  100

seq1  CTTAGATGGCAAGGCTCTGTAGGCAAAGGCTTTTTCTCCATGTAACCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATGGCAAGGCTCTGTAGGCAAAGGCTTTTTCTCCATGTAACCACA  150

seq1  GTTGGTTTGATGAGAGAAACAGTCTTTGGTTGTAAACTGTTTATTGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTTGATGAGAGAAACAGTCTTTGGTTGTAAACTGTTTATTGCTTT  200

seq1  TCATGGAAATGAAAGCATAACATGTCTTAAGGTTAGACTAGAAGTTAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAAATGAAAGCATAACATGTCTTAAGGTTAGACTAGAAGTTAAGT  250

seq1  AACTTCTGAGGAAGGAATGTCCAGGAAGGGAAGCTTATTGACTAAACCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTGAGGAAGGAATGTCCAGGAAGGGAAGCTTATTGACTAAACCCT  300

seq1  ACCATCTTCTATTACCTCATTAGCAGGGAGAACCCTATTCTCTTCTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTTCTATTACCTCATTAGCAGGGAGAACCCTATTCTCTTCTAAAT  350

seq1  AACCACAGGCCATGTTCCTATATAAAGATTTTGGTCCCATGAAAGAGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAGGCCATGTTCCTATATAAAGATTTTGGTCCCATGAAAGAGGCC  400

seq1  TGGTAGGAAGCAGGTGACACTTTTGCCATCTACTGTGGGTCTGGGACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGGAAGCAGGTGACACTTTTGCCATCTACTGTGGGTCTGGGACTTC  450

seq1  CAACCCACTCGACTTTACCAAATTCTGGATATGGTAGTCTACTGTCCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCACTCGACTTTACCAAATTCTGGATATGGTAGTCTACTGTCCCAG  500

seq1  GTCTTAGTCTGAGATTTATTGATATGAGGAAACACCAGGACATATGTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGTCTGAGATTTATTGATATGAGGAAACACCAGGACATATGTTTA  550

seq1  GTATGCGGGTCTCAGTGCCTACCCTCCACACTGACACACTGTTTCTAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCGGGTCTCAGTGCCTACCCTCCACACTGACACACTGTTTCTAACA  600

seq1  AGGCCACAACTCCTAACAGTACCACTCCCATATTCAAGCCACCACACTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACAACTCCTAACAGTACCACTCCCATATTCAAGCCACCACACTCC  650

seq1  TCTGCAATCTCCCAAGACATTTACCTCACTCTGTCCTACTGTTTTCCTTT  700
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCTGCAATCTCCCAAGACATTTACCTCACTCTGTCCTACTG-TTTCCTTT  699

seq1  TTCTCCTTCACAAATTATGTGTTCTATTATTTTCTTGAAATATCCTCCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTCACAAATTATGTGTTCTATTATTTTCTTGAAATATCCTCCTA  749

seq1  TAACCCAACACTAGTGCA-TTACCTT-CTA-TGGATACTGCAGTTTAAAT  797
      |||||||||||||||||| ||||||| ||| |||||||||||||||||||
seq2  TAACCCAACACTAGTGCATTTACCTTCCTATTGGATACTGCAGTTTAAAT  799

seq1  GCACATCTCTAGACATTCGATGTTGCCATCCACATAAGACACATCATGTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATCTCTAGACATTCGATGTTGCCATCCACATAAGACACATCATGTG  849

seq1  GTTTTTTTCTCTTTGGGTGTGGGTTATATCACTCAG-AAAGATTATTC-A  895
         |||||||||||||||||| |||||||||||||| |||||||| || |
seq2  --ATTTTTCTCTTTGGGTGTGAGTTATATCACTCAGAAAAGATTAATCAA  897

seq1  TGTCTCCAT  904
      |||||||||
seq2  TGTCTCCAT  906