BAC Information

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BAC

Clone NameB6Ng01-209C02
Chromosome14 (Build37)
Map Location 34,131,322 - 34,132,365
singlet/doubletsinglet
Overlap geneArhgap22
Upstream geneOgdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834, EG665618, Ercc6, 9430077A04Rik, Prrxl1, 3425401B19Rik, 1810011H11Rik, 4922501K12Rik, E130203B14Rik, EG665658, Lrrc18, EG622657
Downstream geneMapk8, LOC100040079, LOC665681, Frmpd2, LOC100040093, Ptpn20, Gdf10, Gdf2, Rbp3, Zfp488, EG665754, EG432838, Antxrl, Anxa8, LOC100041131, LOC665768, Ppyr1, LOC100041163, Gprin2, Syt15, 3110001K24Rik, LOC623142, Glud1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209C02.bB6Ng01-209C02.g
ACCGA027830GA027831
length1,0411,145
definitionB6Ng01-209C02.b B6Ng01-209C02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctggggcctcattaagctgtctgtgacgaagtgatcttgcctag
tgctaactgtataagtgacttggcagcaacaagaagtcagggctggctgg
cttttctctggtgctctctttgtaagctccttccaagttctgagtaaaaa
cattctttctggatctgctgcggacaccctgagactctcccaaagcccca
tccaggttttctagggagtcaaagagagggaggcagagatctgcctgctg
ctgttaatctcccttttgaatgaagacttgggaaaaccttttcctggctt
gccccagtcagcaatcctccctgtctgcttagctcttctgcccacactgg
acagctttggtctcccagcacactgtaccacacaaccctccctgaacaac
tctgtgctgggagatgaaaggagaggtcccaggctagcctaaggccacag
ccctgcatcagagccaggcagtggcagatgctagtggggtctgcaagaag
aaacaacaactgagcactcttggcagggggttgggggctgggcttatgag
tccatccccaacaccacacaaaagtaagcagaaaacataatgaacctgtg
ccaagcaaacacatgagagaatatgattagtctcacttgcgtgttacaca
gcacatgaatacaccttcctggtaggaaacaagcctcttaaaatccaccc
cttttttcacccccccccccccatcccaaaaagaagcaagcctggatttc
cacctcccaagtgtctagaacacctggtggtgttttacctgggcacatca
agcccctctcagtagatccaccccaactaccatgctccacttttatcacc
atgcattagaaaattcctttactgagaaacattttgctggctctagtgtt
atgcagttgccagcaaggctgcaatgaatggtccctatacatagtttccc
tagccatgtgacaagaattctgtggggcacaaacctaggaatggagtgct
gggtccaggttattaagtattttaatacgcaaaaatatatt
gaattctgtgctaaaacatctggccctgaacttgtttgtttggaaaactt
ttaatgactttcaatttcactagggattataggtttatttaaattgttta
tctgaacatgatttaagtttggtaagtggtactattgagaaagttgtcca
tttcttttagattttccaattttgtggagtaccggtttcagaagtatgac
ctaatgactctttggattttctccatgcctgttgttatgcccccttttat
tttctgattttgttaatttgggcattatatctctgccttttagttagttt
ggtaaaggtttgtccatcttcttgggtgtttttttttttttcaaagaact
aaccgtttgtttcattgattttttttcagtgttttcttcgtttctaattt
attgattttagcctgaatttggattatctcttgccatctacttctcttgg
acataattacttctttttgttctagtactttcagacattctggtaagttg
cttgtatgagactctctctctctctctctctctctctctctctctctctc
ttaatgtaggcacttagtgctatgaacttttttttctcagaacctctttc
attgtgtcccataagttgggtatgatgtatattcattttcattaaactct
ttatctatttctatcttgacctatgttttcattcagtaaagggttattcc
gttttctatgaacttgtgagctttctgatgttgttgatatccagcttcaa
tccattgtggtctgataaggatgcaaggagctattccaattttcttgtat
ctgttgagacttgctttgtgtccaaattcatagtcagtttttggagaaag
ttccctgaagtgcaagaaaaatgtatattcttttgggtttggctgatggt
tgcatgtaataattaaaaaaatcaacccacctctattgccagctactctc
cacccaaactccaagtgggtcacttggtcactgaattgttcccagtctat
catttccttgtgcctagctgttggcaaactgccagcatttccaaagttct
tcatctgccgagagtaaatctctgccagcatgaactggtggccttacttg
cttcttggggggcctcttggtttgaggtatgcccaaaataggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_34131322_34132365
seq2: B6Ng01-209C02.b_45_1085

seq1  GAATTCCTGGGGCCTCATTAAGCTGTCTGTGACGAAGTGATCTTGCCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGGCCTCATTAAGCTGTCTGTGACGAAGTGATCTTGCCTAG  50

seq1  TGCTAACTGTATAAGTGACTTGGCAGCAACAAGAAGTCAGGGCTGGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAACTGTATAAGTGACTTGGCAGCAACAAGAAGTCAGGGCTGGCTGG  100

seq1  CTTTTCTCTGGTGCTCTCTTTGTAAGCTCCTTCCAAGTTCTGAGTAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTCTGGTGCTCTCTTTGTAAGCTCCTTCCAAGTTCTGAGTAAAAA  150

seq1  CATTCTTTCTGGATCTGCTGCGGACACCCTGAGACTCTCCCAAAGCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTCTGGATCTGCTGCGGACACCCTGAGACTCTCCCAAAGCCCCA  200

seq1  TCCAGGTTTTCTAGGGAGTCAAAGAGAGGGAGGCAGAGATCTGCCTGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTTTTCTAGGGAGTCAAAGAGAGGGAGGCAGAGATCTGCCTGCTG  250

seq1  CTGTTAATCTCCCTTTTGAATGAAGACTTGGGAAAACCTTTTCCTGGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAATCTCCCTTTTGAATGAAGACTTGGGAAAACCTTTTCCTGGCTT  300

seq1  GCCCCAGTCAGCAATCCTCCCTGTCTGCTTAGCTCTTCTGCCCACACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGTCAGCAATCCTCCCTGTCTGCTTAGCTCTTCTGCCCACACTGG  350

seq1  ACAGCTTTGGTCTCCCAGCACACTGTACCACACAACCCTCCCTGAACAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTTGGTCTCCCAGCACACTGTACCACACAACCCTCCCTGAACAAC  400

seq1  TCTGTGCTGGGAGATGAAAGGAGAGGTCCCAGGCTAGCCTAAGGCCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCTGGGAGATGAAAGGAGAGGTCCCAGGCTAGCCTAAGGCCACAG  450

seq1  CCCTGCATCAGAGCCAGGCAGTGGCAGATGCTAGTGGGGTCTGCAAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCATCAGAGCCAGGCAGTGGCAGATGCTAGTGGGGTCTGCAAGAAG  500

seq1  AAACAACAACTGAGCACTCTTGGCAGGGGGTTGGGGGCTGGGCTTATGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACAACTGAGCACTCTTGGCAGGGGGTTGGGGGCTGGGCTTATGAG  550

seq1  TCCATCCCCAACACCACACAAAAGTAAGCAGAAAACATAATGAACCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCCCAACACCACACAAAAGTAAGCAGAAAACATAATGAACCTGTG  600

seq1  CCAAGCAAACACATGAGAGAATATGATTAGTCTCACTTGCGTGTTACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCAAACACATGAGAGAATATGATTAGTCTCACTTGCGTGTTACACA  650

seq1  GCACATGAATACACCTTCCTGGTAGGAAACAAGCCTCTTAAAATCCACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGAATACACCTTCCTGGTAGGAAACAAGCCTCTTAAAATCCACCC  700

seq1  CTTTTTTCACCCCCCCCCCCCCATCCCAAAAAGAAGCAAGCCTGGATTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCACCCCCCCCCCCCCATCCCAAAAAGAAGCAAGCCTGGATTTC  750

seq1  CACCTCCCAAGTGTCTAGAACACCTGGTGGTGTTTTACCTGGGCACATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCCAAGTGTCTAGAACACCTGGTGGTGTTTTACCTGGGCACATCA  800

seq1  AGCCCCTCTCAGTAGATCCACCCCAACTACCATGCTCCAC-TTTATCACC  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGCCCCTCTCAGTAGATCCACCCCAACTACCATGCTCCACTTTTATCACC  850

seq1  ATGCATTAGAAAATTCCTTTACTGAGAAACATTTTGCTGGCTCTAGTGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTAGAAAATTCCTTTACTGAGAAACATTTTGCTGGCTCTAGTGTT  900

seq1  AAACAGTTGCCAGCAAGGCTGCAATGAATGGCCCCTATACATAGTTTCCC  949
      |  |||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATGCAGTTGCCAGCAAGGCTGCAATGAATGGTCCCTATACATAGTTTCCC  950

seq1  TAGCCATGTGGACAAGAATTCTTGTGGGGCACAAACTAGGGAATGGAGTT  999
      ||||||||| ||||||||||| ||||||||||||||   ||||||||| |
seq2  TAGCCATGT-GACAAGAATTC-TGTGGGGCACAAACCTAGGAATGGAG-T  997

seq1  GCTGGGTCCCAGGGTATT-AGTATTTTTAATAGGGAAAAATATATT  1044
      ||||||| ||||| |||| |||| |||||||| | |||||||||||
seq2  GCTGGGT-CCAGGTTATTAAGTA-TTTTAATACGCAAAAATATATT  1041