BAC Information

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BAC

Clone NameB6Ng01-209E05
Chromosome14 (Build37)
Map Location 28,042,216 - 28,243,664
singlet/doubletdoublet
Overlap geneArhgef3, LOC100040147
Upstream geneLOC100039280, LOC100039293, LOC100039527, LOC100039538, 4933413J09Rik, Slmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1, Il17rd, LOC665333
Downstream geneCcdc66, LOC665370, Erc2, LOC100040206
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209E05.bB6Ng01-209E05.g
ACCGA027925GA027926
length995530
definitionB6Ng01-209E05.b B6Ng01-209E05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,242,671 - 28,243,664)(28,042,216 - 28,042,751)
sequence
gaattcactgtcttgccctacaccctaaagtattacatcatttaaagagt
atttctagaaacattcacttcagccggcaaagatcaacttcatccttctc
tgcatggtttctcatgctatttccttcgctttgtcatccatttagaaagg
aactttctttatactttcataatctcagttgtgcagagagttggttaccc
agatgcacggttccaatcaagattctaaatcttcagatattcaaatgaca
aaaaaaaaagatttgggaaataaacaattaaaaaaaaaaacacgcagtaa
gaaggtaagtgtttaagtcaaatccagaaaattccaaattatcggacagt
caaaacctactctaagaaaaaaaaaagtgtacgttttacaatatggcact
aagatctcaaaaagtaagcaacccaactgttcctataatcgtttaagaaa
agtcattctaggcttggaagttatacagaagaacctacgtaagctaatgc
ttttccaaaaaaaaaaaaaaaaaaactacatggaaatgaagtgtgatgga
aaactgcatggagcgcatatactaatggagagttttctaaatagaagacg
ctgacatcgagcacatttcaagtagacacacagagctgaagaatttccac
agtgagaaacacttgtccttagaacgcagtggccttggagaaagcctcag
aatccatggccacaggctacttccacaagcagacttctcagaagcatctt
taggaggccaccatcagctttctctgccttcggggcttgggggaaaagag
gggcaccgagcaccatctttccgctcggggagccgcagccttatggaaac
gcttcaacctgagctacttccaacttccacggggagagggggagcggcgg
agcgtggttccaccctatcctctctgcaccaagggcggctgggcggccgt
ggccttgagcgaagagcttgcttgctcttgcttgcgtgtttacgt
ttctgaggtgttcatgcacacccacccttggagcctgtttctcttgactg
gggaaagtgagccccatctctacccaaatcaggatacagttcttccctgg
gaggcatgtgggtgctagactgaatgccggcaggggtggaaggtgtcagt
gtgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtgtgtctgtgt
gcaagaggaggctgcgatctggagtaccaggttcaaagttccaccagctg
tgacacaattggtcctcgttcacctggtgtctgtgggagcactgtggtga
gaagcaccatgatgcaaatccacgttaagtttttgttcatctctggcaag
cctagctcttgggacaactcctttaacctttctgagcctagagagtgtca
gtaacctctatgaaatcactgagtagcctggaatcaagggaacttcgcct
gccgtctggcgagtagaaggtccccaggcagtggtgtttgctactgtcat
ctgaaatgaattaatcacaggatgtggtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_28242671_28243664
seq2: B6Ng01-209E05.b_42_1036 (reverse)

seq1  ACGTAAACACGCACGCAAGCGCCAGCAGCCTCTCCGCTCACGGCCACGGC  50
      ||||||||||||| ||||| || ||||  |||| |||||| |||||||||
seq2  ACGTAAACACGCAAGCAAGAGCAAGCAAGCTCTTCGCTCAAGGCCACGGC  50

seq1  CGCCCAGCCGCCCTTGGTGC-GAGAGGATAGGGTGGAACCACGCTCCGCC  99
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CGCCCAGCCGCCCTTGGTGCAGAGAGGATAGGGTGGAACCACGCTCCGCC  100

seq1  GCTCCCCCTCTCCCCGTGGAAGTTGGAAGTAGCTCAGGTTTGAAGCGTTT  149
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCTCCCCCTCTCCCCGTGGAAGTTGGAAGTAGCTCAGG-TTGAAGCGTTT  149

seq1  CCATAAGGCTGCGGCTCCCCGAGCGGAAAGATGGTGCTCGGTGCCCCTCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGGCTGCGGCTCCCCGAGCGGAAAGATGGTGCTCGGTGCCCCTCT  199

seq1  TTTCCCCCAAGCCCCGAAGGCAGAG-AAGCTGATGGTGGCCTCCTAAAGA  248
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTCCCCCAAGCCCCGAAGGCAGAGAAAGCTGATGGTGGCCTCCTAAAGA  249

seq1  TGCTTCTGAGAAGTCTGCTTGTGGAAGTAGCCTGTGGCCATGGATTCTGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGAGAAGTCTGCTTGTGGAAGTAGCCTGTGGCCATGGATTCTGA  299

seq1  GGCTTTCTCCAAGGCCACTGCGTTCTAAGGACAAGTGTTTCTCACTGTGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCTCCAAGGCCACTGCGTTCTAAGGACAAGTGTTTCTCACTGTGG  349

seq1  AAATTCTTCAGCTCTGTGTGTCTACTTGAAATGTGCTCGATGTCAGCGTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTCAGCTCTGTGTGTCTACTTGAAATGTGCTCGATGTCAGCGTC  399

seq1  TTCTATTTAGAAAACTCTCCATTAGTATATGCGCTCCATGCAGTTTTCCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTAGAAAACTCTCCATTAGTATATGCGCTCCATGCAGTTTTCCA  449

seq1  TCACACTTCATTTCCATGTAGTTTTTTTTTTTTTTTTTTTGGAAAAGCAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTTCATTTCCATGTAGTTTTTTTTTTTTTTTTTTTGGAAAAGCAT  499

seq1  TAGCTTACGTAGGTTCTTCTGTATAACTTCCAAGCCTAGAATGACTTTTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTACGTAGGTTCTTCTGTATAACTTCCAAGCCTAGAATGACTTTTC  549

seq1  TTAAACGATTATAGGAACAGTTGGGTTGCTTACTTTTTGAGATCTTAGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACGATTATAGGAACAGTTGGGTTGCTTACTTTTTGAGATCTTAGTG  599

seq1  CCATATTGTAAAACGTACACTTTTTTTTTTCTTAGAGTAGGTTTTGACTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTGTAAAACGTACACTTTTTTTTTTCTTAGAGTAGGTTTTGACTG  649

seq1  TCCGATAATTTGGAATTTTCTGGATTTGACTTAAACACTTACCTTCTTAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGATAATTTGGAATTTTCTGGATTTGACTTAAACACTTACCTTCTTAC  699

seq1  TGCGTGTTTTTTTTTTTAATTGTTTATTTCCCAAATCTTTTTTTTTTGTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGTTTTTTTTTTTAATTGTTTATTTCCCAAATCTTTTTTTTTTGTC  749

seq1  ATTTGAATATCTGAAGATTTAGAATCTTGATTGGAACCGTGCATCTGGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAATATCTGAAGATTTAGAATCTTGATTGGAACCGTGCATCTGGGT  799

seq1  AACCAACTCTCTGCACAACTGAGATTATGAAAGTATAAAGAAAGTTCCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACTCTCTGCACAACTGAGATTATGAAAGTATAAAGAAAGTTCCTT  849

seq1  TCTAAATGGATGACAAAGCGAAGGAAATAGCATGAGAAACCATGCAGAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATGGATGACAAAGCGAAGGAAATAGCATGAGAAACCATGCAGAGA  899

seq1  AGGATGAAGTTGATCTTTGCCGGCTGAAGTGAATGTTTCTAGAAATACTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGAAGTTGATCTTTGCCGGCTGAAGTGAATGTTTCTAGAAATACTC  949

seq1  TTTAAATGATGTAATACTTTAGGGTGTAGGGCAAGACAGTGAATTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGATGTAATACTTTAGGGTGTAGGGCAAGACAGTGAATTC  995

seq1: chr14_28042216_28042751
seq2: B6Ng01-209E05.g_65_600

seq1  GAATTCTTCTGAGGTGTTCATGCACACCCACCCTTGGAGCCTGTTTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGAGGTGTTCATGCACACCCACCCTTGGAGCCTGTTTCTCT  50

seq1  TGACTGGGGAAAGTGAGCCCCATCTCTACCCAAATCAGGATACAGTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGGGAAAGTGAGCCCCATCTCTACCCAAATCAGGATACAGTTCTT  100

seq1  CCCTGGGAGGCATGTGGGTGCTAGACTGAATGCCGGCAGGGGTGGAAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGAGGCATGTGGGTGCTAGACTGAATGCCGGCAGGGGTGGAAGGT  150

seq1  GTCAGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGT  200

seq1  CTGTGTGCAAGAGGAGGCTGCGATCTGGAGTACCAGGTTCAAAGTTCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGCAAGAGGAGGCTGCGATCTGGAGTACCAGGTTCAAAGTTCCAC  250

seq1  CAGCTGTGACACAATTGGTCCTCGTTCACCTGGTGTCTGTGGGAGCACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTGACACAATTGGTCCTCGTTCACCTGGTGTCTGTGGGAGCACTG  300

seq1  TGGTGAGAAGCACCATGATGCAAATCCACGTTAAGTTTTTGTTCATCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGAAGCACCATGATGCAAATCCACGTTAAGTTTTTGTTCATCTCT  350

seq1  GGCAAGCCTAGCTCTTGGGACAACTCCTTTAACCTTTCTGAGCCTAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCCTAGCTCTTGGGACAACTCCTTTAACCTTTCTGAGCCTAGAGA  400

seq1  GTGTCAGTAACCTCTATGAAATCACTGAGTAGCCTGGAATCAAGGGAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGTAACCTCTATGAAATCACTGAGTAGCCTGGAATCAAGGGAACT  450

seq1  TCGCCTGCCGTCTGGCGAGTAGAAGGTCCCCAGGCAGTGGTGTTTGCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCTGCCGTCTGGCGAGTAGAAGGTCCCCAGGCAGTGGTGTTTGCTAC  500

seq1  TGTCATCTGAAATGAATTAATCACAGGATGTGGTAA  536
      ||||||||||||||||||||||||||||||||||||
seq2  TGTCATCTGAAATGAATTAATCACAGGATGTGGTAA  536