BAC Information

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BAC

Clone NameB6Ng01-209E11
Chromosome14 (Build37)
Map Location 85,509,361 - 85,510,536
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
Downstream geneLOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209E11.bB6Ng01-209E11.g
ACCGA027937GA027938
length1,2201,146
definitionB6Ng01-209E11.b B6Ng01-209E11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttactgacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcaatcttacagtacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggaacgattcgc
attcttctacacgataaagaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcgcttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctccataccagcaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaagtttttctcata
cagatctttcacttccttatttagagtcacgccaagatattttatattat
ttgtggctattgaaaggtgttgtttccctaatttcttctcagcctgttta
ttcttgtatagagaaaggccaatgacttgtttgagtttattttatattcc
agctacttcacctgaagctgttatcagttaagagagttcttctcggtaga
aatttttagaggtcactatatatactattcatattcattctgcaatgatt
tgaacttcccttttcatggatcctgactccttgcgttcgattgccctctg
gcctatacatctctgacagc

gaattcaccatggtggtagaattccgccatgactccatgggggtactggg
ctgtactaggccacattttgggtccattactgaaacacctgaggtctggg
gaacaaaaggacacctttggctcaggtctggcctcatcccttgcctgggc
atattgagagctagtcctgtagtcttaagagtaggagagctgaactcaca
gctagccagctgcagctgtgagagaggagaggagaactgaattgagccca
taatcatcagagtgggagatctgggccctggctcttgcagctgaggcttt
gaatgagccagccagggtaggaaagaagagcttgcctcagaagtctaggt
gcaggacagctggtgagcaaacaagctcagatacagctcaggctcaggtc
cactccaacacctaccccattggtgaattgctggagcgtgtaaaggggcc
tgcctactggtccaaaactacagaatctctgtgaaaaagggcaacaacaa
gatatttgagaggcatttcagtgaagtttcacaaatgatactgtagcaga
agccggagactttgaatcagaccaaacactgtttgcaatgaacatttgca
aggaaaacagagtgggaacaaaaggaaaagtgtgggacacagtgtgacac
actgaagattccatgataaaggttttttgtttgtttgtttgtttgtttgt
ttgttttatttcttttttctcttttggggaggaggtagaaagagtgcaac
atgggaggtgcatgatgtgcaattcacaaagaaccactgaaatttttaaa
gagaaaaataacactagaattcatgggtaaaatatcaatgttaactttac
tgtaaaaatattctaagattttctttctctgaaagtgactataaagatat
atttttgaaaataaaattaaaaagaaaatagttgatatatgagattctga
tttcattttctcctcctaatactccaagtgtctcaaccacctagttctcc
catctgatcatatactttattctgtctctcttaggaaacaagaacatcta
aattataataagaacaaccggaatgacaagcaaaaccttactgaagccat
aatactactgatgacttgtaagaattctttgttaagggaagtcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_85509361_85510536
seq2: B6Ng01-209E11.g_63_1208

seq1  GAATTCACCATGGTGGTAGAATTCCGCCATGACTCCATGGGGGTACTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATGGTGGTAGAATTCCGCCATGACTCCATGGGGGTACTGGG  50

seq1  CTGTACTAGGCCACATTTTGGGTCCATTACTGAAACACCTGAGGTCTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTAGGCCACATTTTGGGTCCATTACTGAAACACCTGAGGTCTGGG  100

seq1  GAACAAAAGGACACCTTTGGCTCAGGTCTGGCCTCATCCCTTGCCTGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAAGGACACCTTTGGCTCAGGTCTGGCCTCATCCCTTGCCTGGGC  150

seq1  ATATTGAGAGCTAGTCCTGTAGTCTTAAGAGTAGGAGAGCTGAACTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAGAGCTAGTCCTGTAGTCTTAAGAGTAGGAGAGCTGAACTCACA  200

seq1  GCTAGCCAGCTGCAGCTGTGAGAGAGGAGAGGAGAACTGAATTGAGCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCCAGCTGCAGCTGTGAGAGAGGAGAGGAGAACTGAATTGAGCCCA  250

seq1  TAATCATCAGAGTGGGAGATCTGGGCCCTGGCTCTTGCAGCTGAGGCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATCAGAGTGGGAGATCTGGGCCCTGGCTCTTGCAGCTGAGGCTTT  300

seq1  GAATGAGCCAGCCAGGGTAGGAAAGAAGAGCTTGCCTCAGAAGTCTAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGCCAGCCAGGGTAGGAAAGAAGAGCTTGCCTCAGAAGTCTAGGT  350

seq1  GCAGGACAGCTGGTGAGCAAACAAGCTCAGATACAGCTCAGGCTCAGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGACAGCTGGTGAGCAAACAAGCTCAGATACAGCTCAGGCTCAGGTC  400

seq1  CACTCCAACACCTACCCCATTGGTGAATTGCTGGAGCGTGTAAAGGGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCAACACCTACCCCATTGGTGAATTGCTGGAGCGTGTAAAGGGGCC  450

seq1  TGCCTACTGGTCCAAAACTACAGAATCTCTGTGAAAAAGGGCAACAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACTGGTCCAAAACTACAGAATCTCTGTGAAAAAGGGCAACAACAA  500

seq1  GATATTTGAGAGGCATTTCAGTGAAGTTTCACAAATGATACTGTAGCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTGAGAGGCATTTCAGTGAAGTTTCACAAATGATACTGTAGCAGA  550

seq1  AGCCGGAGACTTTGAATCAGACCAAACACTGTTTGCAATGAACATTTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGGAGACTTTGAATCAGACCAAACACTGTTTGCAATGAACATTTGCA  600

seq1  AGGAAAACAGAGTGGGAACAAAAGGAAAAGTGTGGGACACAGTGTGACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACAGAGTGGGAACAAAAGGAAAAGTGTGGGACACAGTGTGACAC  650

seq1  ACTGAAGATTCCATGATAAAGGTTTTTTGTTTGTTTGTTTGTTTGTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGATTCCATGATAAAGGTTTTTTGTTTGTTTGTTTGTTTGTTTGT  700

seq1  TTGTTTTATTTCTTTTTTCTCTTTTGGGGAGGAGGTAGAAAGAGTGCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTATTTCTTTTTTCTCTTTTGGGGAGGAGGTAGAAAGAGTGCAAC  750

seq1  ATGGGAGGTGCATGATGTGCAATTCACAAAGAACCACTGAAATTTTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGGTGCATGATGTGCAATTCACAAAGAACCACTGAAATTTTTAAA  800

seq1  GAGAAAAATAACACTAGAATTCAGGGGTAAAATATCAATGTTAACTTTAC  850
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAGAAAAATAACACTAGAATTCATGGGTAAAATATCAATGTTAACTTTAC  850

seq1  TGTAAAAATATTCTAAGATTTTCTTTCTCTGAAAGTGACTATAAAGATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGTAAAAATATTCTAAGATTTTCTTTCTCTGAAAGTGACTATAAAGATAT  900

seq1  TATTTTGAAAATAAAATTAAAAAGAAAATAGTTGATATATGAGATTTCTG  950
        |||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATTTTTGAAAATAAAATTAAAAAGAAAATAGTTGATATATGAGA-TTCTG  949

seq1  ATTTCATTTTCTCCTCCTAAATACTCCAAGTGTCTC-ACCACCTAGTTTC  999
      |||||||||||||||||| ||||||||||||||||| ||||||||| |||
seq2  ATTTCATTTTCTCCTCCT-AATACTCCAAGTGTCTCAACCACCTAG-TTC  997

seq1  TCCCATCTGAATTCATATACTTTTATTCTGTCTCTTCTTAGAAAACAAAG  1049
      ||||||||||  |||||||| ||||||||||||| |||||| ||||||  
seq2  TCCCATCTGA--TCATATAC-TTTATTCTGTCTC-TCTTAGGAAACAA--  1041

seq1  AAACATCTAAAATATAATAATAAAAGAAAACAAACAGAAATAGGACAAAG  1099
       |||||||||| |||||||       | ||||| | ||   | ||| |||
seq2  GAACATCTAAATTATAATA-------AGAACAACCGGA---ATGAC-AAG  1080

seq1  CAAAAAACACATAACTAGAAGCCATAATACATACTTGATGGACTTGTAAA  1149
      ||||    || | ||| ||||||||||||| ||| |||| ||||||| ||
seq2  CAAA----ACCTTACT-GAAGCCATAATAC-TAC-TGAT-GACTTGT-AA  1121

seq1  GAATTTTCTTTTGTTAA-GGAAGTCATT  1176
      |||||    |||||||| ||||||||||
seq2  GAATT---CTTTGTTAAGGGAAGTCATT  1146


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