BAC Information

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BAC

Clone NameB6Ng01-209F17
Chromosome14 (Build37)
Map Location 117,813,053 - 117,814,252
singlet/doubletsinglet
Overlap geneGpc6
Upstream geneGpc5
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209F17.bB6Ng01-209F17.g
ACCGA027995GA027996
length1,1841,165
definitionB6Ng01-209F17.b B6Ng01-209F17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttgctttccaaatcagcttcatttaacatttctaatgcattg
gtcatagggcttgtctgccaaaattctgtagacagtgatctaagaattca
ggccccatcatcatctcacccttcacaagtttgatgatcaaggattgtgg
atgacattttacgactgtgctcttgcaatgcctggactagaatcctctgg
gcttttccaattaatggctgagtgatgtttcccataactgatatctctga
gctcactgtgatctaaagaataaggagagccatttcttctctcgatctta
ataaccgtagcagagggatcagttcacatattagggtgatattttgaaaa
ataatatgaacatttgataaaatcatctttcttctatttaattcttttac
acaggatttactattactattatcattaggaaaaattatagtcatacaaa
ttaatagggcaataggatcaagaggcgaatcaaagtaataaatattgcct
aagagctgatgagatttcaggataacaagataaaagccacatgaagagtt
aggacacacctatcaaatgtctcctggttgatgctgagcaaagagaatga
ttttgtaatgatatctatacttaaaaatttatcaaaaaataatacttaac
actggtgtggttcgtaacacatgttcctttgtattctgaacacccttttt
ttttttaaacaaactatagatatgttgtatcactgagacatccttcagtg
aaatggtacctctgtatcccatttccaaaagaatagagggccctgaagac
agcttagtttgtaagaactcttgccattaaacctaaagatctgagttcag
tccctgagaaccacataggaaggaaataataaacttttaaaagttgcttt
ctaaccttcatacacaaaccatggtgcatgtgacgtgcactcacatgtgc
acacacaaataaataataaacagtaatagataaatgagagagagagagac
gagagagagagagagagagagtgataagaaatggtggcaatattatggaa
atttaaagagtattaaacatgtagaggagtagagaatcagaaaaaattgc
agtgtacatttcttacaatgtgcacatttgtttaacattaaggctaccat
ctgttcagttaaatattaggctacacggggtgaa

gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatctttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgcgccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgaagacttatgccggggcctagcaa
acacagaagtggatgctcacagtcagctaatggatggatcatagggctcc
taatggaggagctagagaaagtagccaaggagctaaagggatctgcaccc
tatagtgtacacattacgactaccagtacccggagcttctgactctagct
gcatatatatcaaagatgctagtcggccatcacttgaagagaggccattg
aactggccaactatggcctagttagggaacctcaggtcaagaggggggat
gtggttgggctacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_117813053_117814252
seq2: B6Ng01-209F17.b_45_1228

seq1  GAATTCATTTGCTTTCCAAATCAGCTTCATTTAACATTTCTAATGCATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGCTTTCCAAATCAGCTTCATTTAACATTTCTAATGCATTG  50

seq1  GTCATAGGGCTTGTCTGCCAAAATTCTGTAGACAGTGATCTAAGAATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGGGCTTGTCTGCCAAAATTCTGTAGACAGTGATCTAAGAATTCA  100

seq1  GGCCCCATCATCATCTCACCCTTCACAAGTTTGATGATCAAGGATTGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCATCATCATCTCACCCTTCACAAGTTTGATGATCAAGGATTGTGG  150

seq1  ATGACATTTTACGACTGTGCTCTTGCAATGCCTGGACTAGAATCCTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATTTTACGACTGTGCTCTTGCAATGCCTGGACTAGAATCCTCTGG  200

seq1  GCTTTTCCAATTAATGGCTGAGTGATGTTTCCCATAACTGATATCTCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCCAATTAATGGCTGAGTGATGTTTCCCATAACTGATATCTCTGA  250

seq1  GCTCACTGTGATCTAAAGAATAAGGAGAGCCATTTCTTCTCTCGATCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTGTGATCTAAAGAATAAGGAGAGCCATTTCTTCTCTCGATCTTA  300

seq1  ATAACCGTAGCAGAGGGATCAGTTCACATATTAGGGTGATATTTTGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCGTAGCAGAGGGATCAGTTCACATATTAGGGTGATATTTTGAAAA  350

seq1  ATAATATGAACATTTGATAAAATCATCTTTCTTCTATTTAATTCTTTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATGAACATTTGATAAAATCATCTTTCTTCTATTTAATTCTTTTAC  400

seq1  ACAGGATTTACTATTACTATTATCATTAGGAAAAATTATAGTCATACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATTTACTATTACTATTATCATTAGGAAAAATTATAGTCATACAAA  450

seq1  TTAATAGGGCAATAGGATCAAGAGGCGAATCAAAGTAATAAATATTGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGGGCAATAGGATCAAGAGGCGAATCAAAGTAATAAATATTGCCT  500

seq1  AAGAGCTGATGAGATTTCAGGATAACAAGATAAAAGCCACATGAAGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTGATGAGATTTCAGGATAACAAGATAAAAGCCACATGAAGAGTT  550

seq1  AGGACACACCTATCAAATGTCTCCTGGTTGATGCTGAGCAAAGAGAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACACACCTATCAAATGTCTCCTGGTTGATGCTGAGCAAAGAGAATGA  600

seq1  TTTTGTAATGATATCTATACTTAAAAATTTATCAAAAAATAATACTTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAATGATATCTATACTTAAAAATTTATCAAAAAATAATACTTAAC  650

seq1  ACTGGTGTGGTTCGTAACACATGTTCCTTTGTATTCTGAACACCCTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGTGGTTCGTAACACATGTTCCTTTGTATTCTGAACACCCTTTTT  700

seq1  TTTTTTAAACAAACTATAGATATGTTGTATCACTGAGACATCCTTCAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAACAAACTATAGATATGTTGTATCACTGAGACATCCTTCAGTG  750

seq1  AAATGGTACCTCTGTATCCCATTTCCAAAAGAATAGAGGGCCCTGAAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTACCTCTGTATCCCATTTCCAAAAGAATAGAGGGCCCTGAAGAC  800

seq1  AGCTTAGTTTGTAAGAACTCTTGCCATTAAACCTAAAGATCTGAGTTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGTTTGTAAGAACTCTTGCCATTAAACCTAAAGATCTGAGTTCAG  850

seq1  TCCCTGAGAACCACATAGGAAGGAAATAATAAACTTTTAAAAGTTGCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGAGAACCACATAGGAAGGAAATAATAAACTTTTAAAAGTTGCTTT  900

seq1  CTAACCTTCATACACAAACCATGGTGCATGTGACGTGCACTCACATGTGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTTCATACACAAACCATGGTGCATGTGACGTGCACTCACATGTGC  950

seq1  ACACACAAATAAATAATAAACAGTAAATAGATAAATGAGAGAGAGAGAGA  1000
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACACACAAATAAATAATAAACAGT-AATAGATAAATGAGAGAGAGAGAGA  999

seq1  CAGAGAGAGAGAGAGAGAGAGAAGTGATAAAGAAATTGGTGGCAAATATA  1050
      | ||||||||||||||||||| |||||| |||||| ||||||| ||||| 
seq2  C-GAGAGAGAGAGAGAGAGAG-AGTGAT-AAGAAA-TGGTGGC-AATATT  1044

seq1  TTGAAAATTTAAAGAAGTATTTAAAAACAATGTAGA-GAGTAGAGGATCA  1099
       || |||||||||| ||||||   |||| ||||||| |||||||| ||||
seq2  ATGGAAATTTAAAG-AGTATT---AAAC-ATGTAGAGGAGTAGAGAATCA  1089

seq1  GAAAAAAATTTGCAAAGTGTTACATTTCTTACAATTGTGGCACATTTGTT  1149
      |||||||  ||||  |||| |||||||||||||| ||| |||||||||||
seq2  GAAAAAA--TTGC--AGTG-TACATTTCTTACAA-TGT-GCACATTTGTT  1132

seq1  TTACTTTTTAGGCTACCCTCTGCTACATTATAATATTAGGGTACA---GG  1196
      | ||  || |||||||| |||| | || |  ||||||||| ||||   ||
seq2  TAAC-ATTAAGGCTACCATCTG-TTCAGTTAAATATTAGGCTACACGGGG  1180

seq1  TGAA  1200
      ||||
seq2  TGAA  1184


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