BAC Information

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BAC

Clone NameB6Ng01-209M18
Chromosome14 (Build37)
Map Location 11,002,978 - 11,004,124
singlet/doubletsinglet
Overlap geneFhit
Upstream geneLOC100041948, LOC100042415
Downstream geneLOC100041974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209M18.bB6Ng01-209M18.g
ACCGA028319GA028320
length1871,172
definitionB6Ng01-209M18.b B6Ng01-209M18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaccacatcatatgaaacagggcaaggtgacatagtcctgtattc
ccagcatttaggaggtggaaacaagagaattagttggtcaaagtcatcct
tcattacgtaatagaaaattcaatgccagtctaaaccatacctgatctag
tatacagaaggaagggaggaagggaagaagggaggga
gaattctgtggtgccacatgaggtagaattcaccttctcaactaatgtgt
ttgtttgtttgtttgtttgtttgttttttaaacttaggtttgctgtccat
gatgatagatcccatccacagtgggatttaattcatgcaaaacatggcca
gcatgaccagaaagctcaggatctgaacttgtaagcacacttgagaccct
tctcttaaacgctcctgattctttcatctcagttagttctttcctgtgag
cacagtcaatttcccctaaattctggaagggcaacagaatgggaattaca
ctttctcggattgaattttatggctttaaacaagggactacttcttttcc
aactgtatctttcaggtatgtttcagactcttcagctctgccttgttgtg
aagaaagcatacagttaagtgaccttcagtctacccctgacctctcttcc
attaatgcttattatgcagtgtctggtcagaagaggtccctgaaatagat
gttttcctcccatcacagggacagtgactttgcagctatatctggaattg
ccttattgtgatctttcagttggggttttgcaaagtagacataagcactc
cattaatataagcagagaaatcttagtgatcagaatttggaaattcatga
cattttagaatgccaggtttctctcacacacacccacagaaatgttatat
gaggaaaataatgactataaacataggtatgtaatgtactgtatttgttt
actatctgtaaattacttgtttttagaggtgattttatgctttgaatgca
tcatgggttttattctactatatgtatttgcatccaaggaaccaaaaaaa
agtctcggtataactttaggttgctgtggaaaatgtttttaatgttttta
attccaatagtttatgatatattttacacacactgatgcatacagcagat
ctctggtttgggaatatgtatcttaaattgacttatcttagatttaaata
ttgaccatatggaaaaaaacccaataaaaaaccactccaatttctgtttt
cattttagggactatgtaagtccctaatcacacaaagcattctacattca
tgactaggtaaattccttattcacaaagaccatcttacaatttttttttc
ttcacaggagaatttccattgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_11002978_11004124
seq2: B6Ng01-209M18.g_71_1242 (reverse)

seq1  GCAATGGGAAATACTTCCTGTGAAGAAAAAAAA--TGTAGGAT-GTTTTT  47
      ||||| |||||| | ||||||||||||||||||  |||| ||| || |||
seq2  GCAAT-GGAAATTC-TCCTGTGAAGAAAAAAAAATTGTAAGATGGTCTTT  48

seq1  GTGA--TAGGAA-TTACCTAGTCATGAAATGTAGGATGCTTT-TGTGAT-  92
      ||||   ||||| ||||||||||||| ||||||| ||||||| |||||| 
seq2  GTGAATAAGGAATTTACCTAGTCATG-AATGTAGAATGCTTTGTGTGATT  97

seq1  -AGGACTTACATAGT-CCTAAAATG-AAACAGAA--TGG-GTG--TTTTT  134
        ||||||||||||| ||||||||| ||||||||  ||| |||  |||||
seq2  AGGGACTTACATAGTCCCTAAAATGAAAACAGAAATTGGAGTGGTTTTTT  147

seq1  ATTGG--TTTTTTTCATAT-GTCAATTATTAAATCT-AGAT-AGTCAA-T  178
      |||||  |||||| ||||| ||||||  |||||||| |||| |||||| |
seq2  ATTGGGTTTTTTTCCATATGGTCAATATTTAAATCTAAGATAAGTCAATT  197

seq1  TAAGATACATA-TACCAAACCAGAGATCTGCTGTATGCATCAGTGTGTGT  227
      ||||||||||| | ||||||||||||||||||||||||||||||||||||
seq2  TAAGATACATATTCCCAAACCAGAGATCTGCTGTATGCATCAGTGTGTGT  247

seq1  -AAATATATCATAAACTATT-GAATT-AAAACATT-AAAACATTTTCCAC  273
       ||||||||||||||||||| ||||| |||||||| ||||||||||||||
seq2  AAAATATATCATAAACTATTGGAATTAAAAACATTAAAAACATTTTCCAC  297

seq1  AGCAACCTAAAGTTATACCGAGAC-TTTTTTTGGTTCCTTGGATGCAAAT  322
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGCAACCTAAAGTTATACCGAGACTTTTTTTTGGTTCCTTGGATGCAAAT  347

seq1  ACATATAGTAGATTAAAACCCATGATGCATTCAAAGCATAAAATCACCTC  372
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACATATAGTAGAATAAAACCCATGATGCATTCAAAGCATAAAATCACCTC  397

seq1  TAAAAACAAGTAATTTACAGATAGTAAACAAATACAGTACATTACATACC  422
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAAGTAATTTACAGATAGTAAACAAATACAGTACATTACATACC  447

seq1  TATGTTTATAGTCATTATTTTCCTCATATAACATTTCTGTGGGTGTGTGT  472
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTATAGTCATTATTTTCCTCATATAACATTTCTGTGGGTGTGTGT  497

seq1  GAGAGAAACCTGGCATTCTAAAATGTCATGAATTTCCAAATTCTGATCAC  522
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAACCTGGCATTCTAAAATGTCATGAATTTCCAAATTCTGATCAC  547

seq1  TAAGATTTCTCTGCTTATATTAATGGAGTGCTTATGTCTACTTTGCAAAA  572
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTTCTCTGCTTATATTAATGGAGTGCTTATGTCTACTTTGCAAAA  597

seq1  CCCCAACTGAAAGATCACAATAAGGCAATTCCAGATATAGCTGCAAAGTC  622
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACTGAAAGATCACAATAAGGCAATTCCAGATATAGCTGCAAAGTC  647

seq1  ACTGTCCCTGTGATGGGAGGAAAACATCTATTTCAGGGACCTCTTCTGAC  672
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCCTGTGATGGGAGGAAAACATCTATTTCAGGGACCTCTTCTGAC  697

seq1  CAGACACTGCATAATAAGCATTAATGGAAGAGAGGTCAGGGGTAGACTGA  722
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACTGCATAATAAGCATTAATGGAAGAGAGGTCAGGGGTAGACTGA  747

seq1  AGGTCACTTAACTGTATGCTTTCTTCACAACAAGGCAGAGCTGAAGAGTC  772
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACTTAACTGTATGCTTTCTTCACAACAAGGCAGAGCTGAAGAGTC  797

seq1  TGAAACATACCTGAAAGATACAGTTGGAAAAGAAGTAGTCCCTTGTTTAA  822
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACATACCTGAAAGATACAGTTGGAAAAGAAGTAGTCCCTTGTTTAA  847

seq1  AGCCATAAAATTCAATCCGAGAAAGTGTAATTCCCATTCTGTTGCCCTTC  872
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATAAAATTCAATCCGAGAAAGTGTAATTCCCATTCTGTTGCCCTTC  897

seq1  CAGAATTTAGGGGAAATTGACTGTGCTCACAGGAAAGAACTAACTGAGAT  922
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTTAGGGGAAATTGACTGTGCTCACAGGAAAGAACTAACTGAGAT  947

seq1  GAAAGAATCAGGAGCGTTTAAGAGAAGGGTCTCAAGTGTGCTTACAAGTT  972
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAATCAGGAGCGTTTAAGAGAAGGGTCTCAAGTGTGCTTACAAGTT  997

seq1  CAGATCCTGAGCTTTCTGGTCATGCTGGCCATGTTTTGCATGAATTAAAT  1022
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCTGAGCTTTCTGGTCATGCTGGCCATGTTTTGCATGAATTAAAT  1047

seq1  CCCACTGTGGATGGGATCTATCATCATGGACAGCAAACCTAAGTTTAAAA  1072
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGTGGATGGGATCTATCATCATGGACAGCAAACCTAAGTTTAAAA  1097

seq1  AACAAACAAACAAACAAACAAACAAACACATTAGTTGAGAAGGTGAATTC  1122
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAACAAACAAACAAACACATTAGTTGAGAAGGTGAATTC  1147

seq1  TACCTCATGTGGCACCACAGAATTC  1147
      |||||||||||||||||||||||||
seq2  TACCTCATGTGGCACCACAGAATTC  1172