BAC Information

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BAC

Clone NameB6Ng01-210M23
Chromosome14 (Build37)
Map Location 48,048,099 - 48,180,702
singlet/doubletdoublet
Overlap geneFbxo34, D14Ertd436e
Upstream geneLOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895
Downstream geneEG625730, LOC100042787, Ktn1, 4930447J18Rik, Map1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210M23.bB6Ng01-210M23.g
ACCGA029048GA029049
length1,1411,093
definitionB6Ng01-210M23.b B6Ng01-210M23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,048,099 - 48,049,243)(48,179,617 - 48,180,702)
sequence
gaattcttgtctgcttccaagggaacagacagatattacagcctataacc
tcttcccctggggttgaaataagttataacaatggtatctaatcgtacat
tgctggctgagctagaacaagttggatggacaggcccctttgtcctttat
tagcaacattaatgaggaaactgttttagtgtgtggacagcttctcacgg
gaaccttcgtgaaatcctaccaaatccttgcagaccctgatgtgactggt
tcaaagacaactgttgacagtttgtttattcagccttttgttatttcttg
tctccttttaccttgaagaataaaggaaaatattgaagccttcggtgcac
acgaggaaagtttcggggagataaatgatctccaacaactcacacacagc
agctgcaaaagggtggtttcctttaggccgtgggtctcaatctgtgggtc
tcaaccctgtggggtcgaataaccctttcacaggggttgcttaataccat
cagaagtaacagatatttacattataattcataacagaggcaaaattaca
gttatgaagtagtaatgaaaattattttatggttgggggtcaccatgaca
caaggaactgtattagagggtcacagcactgggaaggttgagaactaccg
ctctagggaggcgagagtagagacgcataaaatcagaaaggtttataaga
aggtttttattgaacttgtaaccctccactctaaaatgaaaagcggctgg
actggagagatgagtcagacggtaaagatgcttgccaccaagcctgacag
actacctgagtttgatctccaggagtcacttggtggaaggagagagccaa
ctcatgaatgctgtgtcctggcctccatacatgtgctgtgggacacacac
acacccccctaataaaacactttaaacatgcatactattgtcattataat
gggccgtgttcccacaggctcatatgtctgaacacttgggcccagctggt
gattttttttttgactctgtgaattcacatctgcaccccaaatctcatca
atctccccatctcttcaatattctgcctctgccctgtaacctcctcccaa
aagaaaaataaaggaatatttctactattgtcacaataata
gaattcaagcccagcctggtctgtataggtcagccagggatacagaatgt
ctcaaaaacaacaaaagttcatgttagtattctgctatgtgtattttggg
aaacaggtacaggacagaatctacaagcactggagtgaggaaagagcttt
ccagctgacagcttggttagatacctggtggtgagcagagtgtgcaccct
cttgtgtttacttcccggattctaggtatttccctaggaatttgcagaag
tggtcagccgggggattggtggaatctcattaacctggggcaggggaagg
acatgcaaataaaccaaggtttggtttggttttgttttaaacaggtttat
tgacaagaaggaaagactaagccaacttaagaacaagcaagaagaatttc
agaaagagtaagtctttaaagtcttttaatctgtagaagtttgtctgttg
cttctgtgtgcagatttgtgaattgccaccccatttagtagactatcttt
ttttgttgttgttgtttcttgtttgtttgtttttgtttttggttttttga
gacagggtgtctctgtgtagccctggttgtcctggaactcactctgtaga
ccaggctggcctcgaactcagaaatgcgcctgcctctgcctcccaagtgc
tgggattaaacgcgtgcgccaacatgcccggccagatagaattttttttg
ttttttgtttttttgttttttgagacagggtttctctgtatagccctggc
tgtcctgaaactcactctgtagaccaggctggcctcgaactcagaaatcc
gcctgcctctgcctccccagtgctgggattaaaggtgtgtgccaccacgc
ctggctagaatgttttaagatgcagattctttggactcctagccctctga
cactctgatgtagtaagtctagggtaagggcccaggaactgagttgttag
ttgggcctccttatgacatttttttaccttagatttagtttagaattttt
gtagagagtctgaacagatgctcggtggtttagagcaacgactgccactt
ccagcagtcctctgagttcagtccctagcaaacacatggtggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_48048099_48049243
seq2: B6Ng01-210M23.b_50_1190

seq1  GAATTCTTGTCTGCTTCCAAGGGAACAGACAGATATTACAGCCTATAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTCTGCTTCCAAGGGAACAGACAGATATTACAGCCTATAACC  50

seq1  TCTTCCCCTGGGGTTGAAATAAGTTATAACAATGGTATCTAATCGTACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCCTGGGGTTGAAATAAGTTATAACAATGGTATCTAATCGTACAT  100

seq1  TGCTGGCTGAGCTAGAACAAGTTGGATGGACAGGCCCCTTTGTCCTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCTGAGCTAGAACAAGTTGGATGGACAGGCCCCTTTGTCCTTTAT  150

seq1  TAGCAACATTAATGAGGAAACTGTTTTAGTGTGTGGACAGCTTCTCACGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACATTAATGAGGAAACTGTTTTAGTGTGTGGACAGCTTCTCACGG  200

seq1  GAACCTTCGTGAAATCCTACCAAATCCTTGCAGACCCTGATGTGACTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTCGTGAAATCCTACCAAATCCTTGCAGACCCTGATGTGACTGGT  250

seq1  TCAAAGACAACTGTTGACAGTTTGTTTATTCAGCCTTTTGTTATTTCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGACAACTGTTGACAGTTTGTTTATTCAGCCTTTTGTTATTTCTTG  300

seq1  TCTCCTTTTACCTTGAAGAATAAAGGAAAATATTGAAGCCTTCGGTGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTTACCTTGAAGAATAAAGGAAAATATTGAAGCCTTCGGTGCAC  350

seq1  ACGAGGAAAGTTTCGGGGAGATAAATGATCTCCAACAACTCACACACAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGAAAGTTTCGGGGAGATAAATGATCTCCAACAACTCACACACAGC  400

seq1  AGCTGCAAAAGGGTGGTTTCCTTTAGGCCGTGGGTCTCAATCTGTGGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAAAAGGGTGGTTTCCTTTAGGCCGTGGGTCTCAATCTGTGGGTC  450

seq1  TCAACCCTGTGGGGTCGAATAACCCTTTCACAGGGGTTGCTTAATACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCTGTGGGGTCGAATAACCCTTTCACAGGGGTTGCTTAATACCAT  500

seq1  CAGAAGTAACAGATATTTACATTATAATTCATAACAGAGGCAAAATTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTAACAGATATTTACATTATAATTCATAACAGAGGCAAAATTACA  550

seq1  GTTATGAAGTAGTAATGAAAATTATTTTATGGTTGGGGGTCACCATGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGAAGTAGTAATGAAAATTATTTTATGGTTGGGGGTCACCATGACA  600

seq1  CAAGGAACTGTATTAGAGGGTCACAGCACTGGGAAGGTTGAGAACTACCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAACTGTATTAGAGGGTCACAGCACTGGGAAGGTTGAGAACTACCG  650

seq1  CTCTAGGGAGGCGAGAGTAGAGACGCATAAAATCAGAAAGGTTTATAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGGAGGCGAGAGTAGAGACGCATAAAATCAGAAAGGTTTATAAGA  700

seq1  AGGTTTTTATTGAACTTGTAACCCTCCACTCTAAAATGAAAAGCGGCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTTATTGAACTTGTAACCCTCCACTCTAAAATGAAAAGCGGCTGG  750

seq1  ACTGGAGAGATGAGTCAGACGGTAAAGATGCTTGCCACCAAGCCTGACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGAGATGAGTCAGACGGTAAAGATGCTTGCCACCAAGCCTGACAG  800

seq1  ACTACCTGAGTTTGATCTCCAGGAGTCACTTGGTGGAAGGAGAGAGCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTGAGTTTGATCTCCAGGAGTCACTTGGTGGAAGGAGAGAGCCAA  850

seq1  CTCATGAATGCTGTGTCCTGGCCTCCATACATGTGCTGTGGGACACACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGAATGCTGTGTCCTGGCCTCCATACATGTGCTGTGGGACACACAC  900

seq1  ACACCCCCCTAATAAAACACTTTAAAACATGCATACTATTGTCATTATAA  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACACCCCCCTAATAAAACACTTT-AAACATGCATACTATTGTCATTATAA  949

seq1  TGGGCCGTGTTCCCACAGGCTCATATGTCTGAACACTTGGGCCCAGCTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCGTGTTCCCACAGGCTCATATGTCTGAACACTTGGGCCCAGCTGG  999

seq1  TGATTTTTTTTTTTTGACTCTGTGAATTTCACATCCTGCACCCCAAATCT  1050
      |||  ||||||||||||||||||||| ||||||| |||||||||||||||
seq2  TGA--TTTTTTTTTTGACTCTGTGAA-TTCACAT-CTGCACCCCAAATCT  1045

seq1  CATCCATCTCCCCATCTC-TCCATA-TCTGCCCTCTGCCCTTGTAACCTC  1098
      |||| ||||||||||||| || ||| |||| ||||||||| |||||||||
seq2  CATCAATCTCCCCATCTCTTCAATATTCTG-CCTCTGCCC-TGTAACCTC  1093

seq1  CTCCCCCAAAAG-AAAATAA--GGATATTTCTACTATTGTCACAATAATA  1145
      ||  |||||||| |||||||  | ||||||||||||||||||||||||||
seq2  CT--CCCAAAAGAAAAATAAAGGAATATTTCTACTATTGTCACAATAATA  1141

seq1: chr14_48179617_48180702
seq2: B6Ng01-210M23.g_66_1158 (reverse)

seq1  GCCACCATGTGGTTGCTGGGAATTGAACTCAGAGAACTTCTGGAAGT-GC  49
      ||||||||||| ||||| || | ||||||||||| ||| |||||||| ||
seq2  GCCACCATGTGTTTGCTAGGGACTGAACTCAGAGGACTGCTGGAAGTGGC  50

seq1  AGTCGGTGCTCTTAACCACCGAGCATCTGTCCAG-CTCTCTACAAAAATT  98
      ||||| |||||| ||||||||||||||||| ||| |||||||||||||||
seq2  AGTCGTTGCTCTAAACCACCGAGCATCTGTTCAGACTCTCTACAAAAATT  100

seq1  CTTAAACTTAAATCTAAGGT-AAAAAATGTCATAAG--GGGCCAACTAAC  145
      | ||||| |||||||||||| |||||||||||||||  || |||||||||
seq2  C-TAAAC-TAAATCTAAGGTAAAAAAATGTCATAAGGAGGCCCAACTAAC  148

seq1  AACTCAG-TCCTGGG-CCTTACCCTAGACTTACTACATCAGAGTGTCAGA  193
      ||||||| ||||||| ||||||||||||||||||||||||||||||||||
seq2  AACTCAGTTCCTGGGCCCTTACCCTAGACTTACTACATCAGAGTGTCAGA  198

seq1  -GGCTAGGAGTCC-AAGAATCTGCATCTTAAAACATTCTAGCCAGGCGTG  241
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGGCTAGGAGTCCAAAGAATCTGCATCTTAAAACATTCTAGCCAGGCGTG  248

seq1  GTGGCACACACCTTTAATCCCAGCACTGGGGAGGCAGAGGCAGGCGGATT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACACACCTTTAATCCCAGCACTGGGGAGGCAGAGGCAGGCGGATT  298

seq1  TCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTTCAGGACAGCCAG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTTCAGGACAGCCAG  348

seq1  GGCTATACAGAGAAACCCTGTCTCAAAAAACAAAAAAACAAAAAACAAAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATACAGAGAAACCCTGTCTCAAAAAACAAAAAAACAAAAAACAAAA  398

seq1  AAAATTCTATCTGGCCGGGCATGTTGGCGCACGCGTTTAATCCCAGCACT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTATCTGGCCGGGCATGTTGGCGCACGCGTTTAATCCCAGCACT  448

seq1  TGGGAGGCAGAGGCAGGCGCATTTCTGAGTTCGAGGCCAGCCTGGTCTAC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCAGAGGCAGGCGCATTTCTGAGTTCGAGGCCAGCCTGGTCTAC  498

seq1  AGAGTGAGTTCCAGGACAACCAGGGCTACACAGAGACACCCTGTCTCAAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGTTCCAGGACAACCAGGGCTACACAGAGACACCCTGTCTCAAA  548

seq1  AAACCAAAAACAAAAACAAACAAACAAGAAACAACAACAACAAAAAAAGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAAACAAAAACAAACAAACAAGAAACAACAACAACAAAAAAAGA  598

seq1  TAGTCTACTAAATGGGGTGGCAATTCACAAATCTGCACACAGAAGCAACA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTACTAAATGGGGTGGCAATTCACAAATCTGCACACAGAAGCAACA  648

seq1  GACAAACTTCTACAGATTAAAAGACTTTAAAGACTTACTCTTTCTGAAAT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACTTCTACAGATTAAAAGACTTTAAAGACTTACTCTTTCTGAAAT  698

seq1  TCTTCTTGCTTGTTCTTAAGTTGGCTTAGTCTTTCCTTCTTGTCAATAAA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGCTTGTTCTTAAGTTGGCTTAGTCTTTCCTTCTTGTCAATAAA  748

seq1  CCTGTTTAAAACAAAACCAAACCAAACCTTGGTTTATTTGCATGTCCTTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTAAAACAAAACCAAACCAAACCTTGGTTTATTTGCATGTCCTTC  798

seq1  CCCTGCCCCAGGTTAATGAGATTCCACCAATCCCCCGGCTGACCACTTCT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCCCAGGTTAATGAGATTCCACCAATCCCCCGGCTGACCACTTCT  848

seq1  GCAAATTCCTAGGGAAATACCTAGAATCCGGGAAGTAAACACAAGAGGGT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTCCTAGGGAAATACCTAGAATCCGGGAAGTAAACACAAGAGGGT  898

seq1  GCACACTCTGCTCACCACCAGGTATCTAACCAAGCTGTCAGCTGGAAAGC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTCTGCTCACCACCAGGTATCTAACCAAGCTGTCAGCTGGAAAGC  948

seq1  TCTTTCCTCACTCCAGTGCTTGTAGATTCTGTCCTGTACCTGTTTCCCAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTCACTCCAGTGCTTGTAGATTCTGTCCTGTACCTGTTTCCCAA  998

seq1  AATACACATAGCAGAATACTAACATGAACTTTTGTTGTTTTTGAGACATT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACATAGCAGAATACTAACATGAACTTTTGTTGTTTTTGAGACATT  1048

seq1  CTGTATCCCTGGCTGACCTATACAGACCAGGCTGGGCTTGAATTC  1086
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCCCTGGCTGACCTATACAGACCAGGCTGGGCTTGAATTC  1093