BAC Information

Click to search

BAC

Clone NameB6Ng01-211F02
Chromosome14 (Build37)13 (Build37)
Map Location 51,390,704 - 51,391,25629,331,232 - 29,331,786
singlet/doubletsingletsinglet
Overlap geneTtc5
Upstream gene3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749
Downstream geneGm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211F02.bB6Ng01-211F02.g
ACCGA029417GA029418
length641942
definitionB6Ng01-211F02.b B6Ng01-211F02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(51,390,704 - 51,391,256)(29,331,232 - 29,331,786)
sequence
gaattcttttttctttttttagattcatttatttattttatatatatgaa
caatgttgctgtcttcagacccaccagaagagggcagcagatctcactac
agatggttgtgagccaccatgtgattcctgggaattgaactcaggatctg
tagaggagtagtcagtgctcttaactgccaagccatctctccagccccac
tttgtgaattcttaaatttgtatctgaaattgacagtgcagttaaaaaac
gtgtatgagtgttttgtctgtatggctgtatgtgtgctgtgtgtgaggtt
tagaactggagttacagttgtttatgagccaccaagtgggtgctgggaac
tgaacctgggtcctctgcaagatcaactagtgctcttaatccacacctca
tctctccggctcccttgacaggtcatttttaagtaaggcagagaaacttt
aaaattctttatctttgagtgttcaggctcacagagttgaagacaaattt
agattctgtttctagatagttctgggaggtgagctttgggttagagtaga
ggcttggttgagatcttatctgggtgtcttgcttttgttttctgcctggc
tggctggctggctgcctccctccctccctcctttcctccct
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
tagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatatgttcttggattcggttagcgagaatttttttgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctatgaaggtctgataaaactctgcactaaacctgtctg
gtcctgggctttttttggctgggagactattaataactacttctatatct
ttaggtgatatgggactgttgagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaagttttcca
gttttgttgagtatagccttttatagaaagatctgatggtgttttggatt
tcttcaggatctgttgttatgtctccctttttcatttctgattttgttaa
ttaggattttgtccctgtgccctttagtgagtctagctaagggtttatct
atgttgttgattttctcaaagaaccaactcctcgtttggttaattcttga
atagttcttcttgttccacttggttgattccacccctgagttgattattt
cctgccgtgtactccctcttggtgaatttgcttctttttttctagagctt
tagatgtgttgcaagctgctagtatgtgcttctcccgtttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_51390704_51391256
seq2: B6Ng01-211F02.b_136_688 (reverse)

seq1  AGGGAGGAAAGGAGGGAGGGAGGGAGGCAGCCAGCCAGCCAGCCAGGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGAAAGGAGGGAGGGAGGGAGGCAGCCAGCCAGCCAGCCAGGCAG  50

seq1  AAAACAAAAGCAAGACACCCAGATAAGATCTCAACCAAGCCTCTACTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAGCAAGACACCCAGATAAGATCTCAACCAAGCCTCTACTCTA  100

seq1  ACCCAAAGCTCACCTCCCAGAACTATCTAGAAACAGAATCTAAATTTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAGCTCACCTCCCAGAACTATCTAGAAACAGAATCTAAATTTGTC  150

seq1  TTCAACTCTGTGAGCCTGAACACTCAAAGATAAAGAATTTTAAAGTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTCTGTGAGCCTGAACACTCAAAGATAAAGAATTTTAAAGTTTCT  200

seq1  CTGCCTTACTTAAAAATGACCTGTCAAGGGAGCCGGAGAGATGAGGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTACTTAAAAATGACCTGTCAAGGGAGCCGGAGAGATGAGGTGTG  250

seq1  GATTAAGAGCACTAGTTGATCTTGCAGAGGACCCAGGTTCAGTTCCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAGAGCACTAGTTGATCTTGCAGAGGACCCAGGTTCAGTTCCCAGC  300

seq1  ACCCACTTGGTGGCTCATAAACAACTGTAACTCCAGTTCTAAACCTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTTGGTGGCTCATAAACAACTGTAACTCCAGTTCTAAACCTCACA  350

seq1  CACAGCACACATACAGCCATACAGACAAAACACTCATACACGTTTTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCACACATACAGCCATACAGACAAAACACTCATACACGTTTTTTAA  400

seq1  CTGCACTGTCAATTTCAGATACAAATTTAAGAATTCACAAAGTGGGGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTGTCAATTTCAGATACAAATTTAAGAATTCACAAAGTGGGGCTG  450

seq1  GAGAGATGGCTTGGCAGTTAAGAGCACTGACTACTCCTCTACAGATCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGGCTTGGCAGTTAAGAGCACTGACTACTCCTCTACAGATCCTG  500

seq1  AGTTCAATTCCCAGGAATCACATGGTGGCTCACAACCATCTGTAGTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAATTCCCAGGAATCACATGGTGGCTCACAACCATCTGTAGTGAGA  550

seq1  TCT  553
      |||
seq2  TCT  553

seq1: chr13_29331232_29331786
seq2: B6Ng01-211F02.g_457_1005 (reverse)

seq1  AGAAACGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCT  50
      |||||||||||| ||||||||||||||||||| |||||||||| ||||||
seq2  AGAAACGGGAGA-AGCACATACTAGCAGCTTG-CAACACATCT-AAAGCT  47

seq1  CTAGAAAAAAAGGAAGCAAATTCACCCAAGA-GGAGTAGACGGCAGGAAA  99
      ||||||||||| |||||||||||| |||||| |||||| |||||||||||
seq2  CTAGAAAAAAA-GAAGCAAATTCA-CCAAGAGGGAGTACACGGCAGGAAA  95

seq1  TAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATT  149
      ||||| |||||||||||| |||||||||||||| ||||||||||||||||
seq2  TAATC-AACTCAGGGGTGGAATCAACCAAGTGG-AACAAGAAGAACTATT  143

seq1  CAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGAT  199
      | ||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  C-AAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAACAT  192

seq1  AGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAA  242

seq1  TTAACAAAATCAGAACTG-AAAAGGGAGACATAACAACAGATCCTGAAGA  298
      ||||||||||||||| || |||||||||||||||||||||||||||||||
seq2  TTAACAAAATCAGAAATGAAAAAGGGAGACATAACAACAGATCCTGAAGA  292

seq1  AATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAAC  348
      ||||||||||||||||||||| ||||| ||||||||||||||||||||||
seq2  AATCCAAAACACCATCAGATCTTTCTATAAAAGGCTATACTCAACAAAAC  342

seq1  TGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCA  398
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAACTTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTACCA  392

seq1  AAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCTAA  448
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAGTTGAATCAGGATCAAGTTGACCATCTCAACAGTCCCATATCACCTAA  442

seq1  AGAAATAGAAGTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGAC  498
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATAGAAGTAGTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGAC  492

seq1  CAGACAGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTTATT  548
      |||||||||||||||||||||| ||||||||||||| ||||||||| |||
seq2  CAGACAGGTTTAGTGCAGAGTTTTATCAGACCTTCATAGAAGATCTAATT  542

seq1  CCAGTTC  555
      |||||||
seq2  CCAGTTC  549