BAC Information

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BAC

Clone NameB6Ng01-211L03
Chromosome14 (Build37)
Map Location 56,780,463 - 56,940,559
singlet/doubletdoublet
Overlap geneLOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082
Upstream geneLOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg
Downstream geneAtp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140, Cryl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211L03.bB6Ng01-211L03.g
ACCGA029688GA029689
length1,1471,129
definitionB6Ng01-211L03.b B6Ng01-211L03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,780,463 - 56,781,588)(56,939,448 - 56,940,559)
sequence
gaattcttacctggaaatgaatggaggaatggggctaggtcattggagga
tgtttatgttttgtggtatatatggcagtgtctctggggttgaggggaat
aaagttgagaaagtaattaaaacacgactcgggcaggggaggcagagaga
gagagagttagagagagagagagttagagagagagagagagagaattatc
aagattaatgaagcaatgaagctgagtccattttttatggttctccaggc
tctcaacaatcaatatcaatatagttcaggaatgtaccaggcagacttga
taaagcactataccacagactttgatttgttaaataccaccccccccttg
tcctcttccttcaaacatactccctagagtagtacaagcagggaagaaat
atatattgggaagaacccccaacagtttttcagggtagagatctggctag
tgcaaaaagggcccttcttttaagggctgcaggaaactagacaatacaac
tttatctaatagtggcctgtttatttggagcaaattcagctcccggagct
agatggttgaaagcaggaggaattccaccaattgctccaatttcttccat
tgtagcagcttggtcaaaacattcagttgttggtggggttaattcaaggg
ttccatctggcatcatagtggcaggtcttggaggagctgaagtaccagat
ggcacaggagcactggtcatggctcctctgttgtttatgcccatagcacc
tttcatagccatttggcccatctgtatctcttgttctctcacatcagaaa
agattcccttgaatccttccttctgtcatcgcatcatttctttcttgttg
ctactgcaatcacagtgcctgttgttcccatttcctgtctgagttctaac
tgcttttgttctgaaccctcttgggttattgcagttccttctattcttcc
aaagctccttcttgacatctcaatcaaaatccttgcctcatggcataatg
tggtacctcatgtcatgctgctgcatcctccatctccagggttcttatga
tcctcccttgatgttctggtccactttgatccctgctgtggcttctccaa
tcgtagtgagtgccctccaggcgcatgggcatacctcatatcctcaa
gaattctctatgtaggtagcccagggtagactctaatttgtgacagtctt
cctgcctctgcctcccgcgtacttggattacagaaattatggagctgtgc
caccatgtggagcccagctaagatctcaatatctcagcatcgaagaagtc
aaagcagaaggattataagtttgaagcccacctagtctaacacaaagagt
tttaggctagcctgtgctccatagagagaccgtgtatcaaaaaacaacaa
acacagacaaataaaaagaggatcttaacagttgtgactttgccttttgg
taactgtggaaagtggcggggccagtctatttaaggataggttagggcag
ttgcctctgcctctgcttgaagaacaggcctgtactctgaattctcatgg
aagctctttcttccagtcagtgggtcagtttgtcttgggcaccttttaga
gctccttttggtgggaatgtaggatctgatcttctgctgtagctctgaag
ggaacaggctccaacaccccagggcaactttgacaccagtgctggcaaca
gaggcacaattaccagtcttttcctgtctctgcacttgagtctttctctc
tccctcacactattataagatcagcctggcattagagagagttgtttcag
ttcaccaaacccagggatctgaagccatattagtctgctaatatttctgc
tgtatttctagcagaagtcagcatcagtctttcttcttctcagggggcaa
tggcttgacaaactaggcatttatttacttatttattttttttttaatat
ttttatttatttctgtttgggggatcgccttactatatagcccagggtgg
cctcagagacgagatcccgtctgtttcagcatctgcagtgttgggatgat
atgattatgttgccacgccttgcataccagggtttctagattccattctg
ttttctcctctctactgtgcgtagtgcgaattgttgagtgttgtgccacc
aggtcttaacagctaagcctcagtagaacgtttgaagtaataaaggatag
ctaactgtcaagcctactattcggcccttgttaaaaggagaaggtagtta
ccaaccagtcttgctccttgcctgacatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_56780463_56781588
seq2: B6Ng01-211L03.b_48_1194

seq1  GAATTCTTACCTGGAAATGAATGGAGGAATGGGGCTAGGTCATTGGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACCTGGAAATGAATGGAGGAATGGGGCTAGGTCATTGGAGGA  50

seq1  TGTTTATGTTTTGTGGTATATATGGCAGTGTCTCTGGGGTTGAGGGGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATGTTTTGTGGTATATATGGCAGTGTCTCTGGGGTTGAGGGGAAT  100

seq1  AAAGTTGAGAAAGTAATTAAAACACGACTCGGGCAGGGGAGGCAGAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGAGAAAGTAATTAAAACACGACTCGGGCAGGGGAGGCAGAGAGA  150

seq1  GAGAGAGTTAGAGAGAGAGAGAGTTAGAGAGAGAGAGAGAGAGAATTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGTTAGAGAGAGAGAGAGTTAGAGAGAGAGAGAGAGAGAATTATC  200

seq1  AAGATTAATGAAGCAATGAAGCTGAGTCCATTTTTTATGGTTCTCCAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTAATGAAGCAATGAAGCTGAGTCCATTTTTTATGGTTCTCCAGGC  250

seq1  TCTCAACAATCAATATCAATATAGTTCAGGAATGTACCAGGCAGACTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACAATCAATATCAATATAGTTCAGGAATGTACCAGGCAGACTTGA  300

seq1  TAAAGCACTATACCACAGACTTTGATTTGTTAAATACCACCCCCCCCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCACTATACCACAGACTTTGATTTGTTAAATACCACCCCCCCCTTG  350

seq1  TCCTCTTCCTTCAAACATACTCCCTAGAGTAGTACAAGCAGGGAAGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCCTTCAAACATACTCCCTAGAGTAGTACAAGCAGGGAAGAAAT  400

seq1  ATATATTGGGAAGAACCCCCAACAGTTTTTCAGGGTAGAGATCTGGCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTGGGAAGAACCCCCAACAGTTTTTCAGGGTAGAGATCTGGCTAG  450

seq1  TGCAAAAAGGGCCCTTCTTTTAAGGGCTGCAGGAAACTAGACAATACAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAAAGGGCCCTTCTTTTAAGGGCTGCAGGAAACTAGACAATACAAC  500

seq1  TTTATCTAATAGTGGCCTGTTTATTTGGAGCAAATTCAGCTCCCGGAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTAATAGTGGCCTGTTTATTTGGAGCAAATTCAGCTCCCGGAGCT  550

seq1  AGATGGTTGAAAGCAGGAGGAATTCCACCAATTGCTCCAATTTCTTCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTTGAAAGCAGGAGGAATTCCACCAATTGCTCCAATTTCTTCCAT  600

seq1  TGTAGCAGCTTGGTCAAAACATTCAGTTGTTGGTGGGGTTAATTCAAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAGCTTGGTCAAAACATTCAGTTGTTGGTGGGGTTAATTCAAGGG  650

seq1  TTCCATCTGGCATCATAGTGGCAGGTCTTGGAGGAGCTGAAGTACCAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCTGGCATCATAGTGGCAGGTCTTGGAGGAGCTGAAGTACCAGAT  700

seq1  GGCACAGGAGCACTGGTCATGGCTCCTCTGTTGTTTATGCCCATAGCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGGAGCACTGGTCATGGCTCCTCTGTTGTTTATGCCCATAGCACC  750

seq1  TTTCATAGCCATTTGGCCCATCTGTATCTCTTGTTCTCTCACATCAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAGCCATTTGGCCCATCTGTATCTCTTGTTCTCTCACATCAGAAA  800

seq1  AGATTCCCTTGAATCCTTCCTTCTGTCATCGCATCATTTC-TTCTTGTTG  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGATTCCCTTGAATCCTTCCTTCTGTCATCGCATCATTTCTTTCTTGTTG  850

seq1  CTACTGCAATCACAGTGCCTG-TGTTCCCA-TTCCTGTCTGAGTTCTAAC  897
      ||||||||||||||||||||| |||||||| |||||||||||||||||||
seq2  CTACTGCAATCACAGTGCCTGTTGTTCCCATTTCCTGTCTGAGTTCTAAC  900

seq1  TGCTTTTGTTTCTGAA-CCTCTT-GGTTA-TGCAGTTCC-TCTA-TCTTC  942
      |||||||| ||||||| |||||| ||||| ||||||||| |||| |||||
seq2  TGCTTTTG-TTCTGAACCCTCTTGGGTTATTGCAGTTCCTTCTATTCTTC  949

seq1  CAAAGCT-CTTCTTGACATCTC-ATC-AAATCC-TGCCTCATTGGCATAA  988
      ||||||| |||||||||||||| ||| |||||| ||||||| ||||||||
seq2  CAAAGCTCCTTCTTGACATCTCAATCAAAATCCTTGCCTCA-TGGCATAA  998

seq1  TGTGGTA-CTCATGTCATGCTGCCTGCAT-CTCCATCTCCA-GGTTCTTA  1035
      ||||||| |||||||||||||| |||||| ||||||||||| ||||||||
seq2  TGTGGTACCTCATGTCATGCTG-CTGCATCCTCCATCTCCAGGGTTCTTA  1047

seq1  TGATCCT-CCTTGATGTTCTGGTCCAC-TTGAT-CCTGCTGTTGCTTCTC  1082
      ||||||| ||||||||||||||||||| ||||| |||||||| |||||||
seq2  TGATCCTCCCTTGATGTTCTGGTCCACTTTGATCCCTGCTGTGGCTTCTC  1097

seq1  C-ATCGTAGTGAGTGCCTTCCA-GCGCAT-GGCATA-CTCATA--CTCAA  1126
      | ||||||||||||||| |||| |||||| |||||| ||||||  |||||
seq2  CAATCGTAGTGAGTGCCCTCCAGGCGCATGGGCATACCTCATATCCTCAA  1147

seq1: chr14_56939448_56940559
seq2: B6Ng01-211L03.g_68_1196 (reverse)

seq1  GATG-CAGGC-AGGAGCAAAGC--GTGTGTACCTACC-TCTCCTTTT-AC  44
      |||| ||||| ||||||||  |  ||  ||| ||||| ||||||||| ||
seq2  GATGTCAGGCAAGGAGCAAGACTGGTTGGTAACTACCTTCTCCTTTTAAC  50

seq1  AAGGGC--GATAGTAG--CTGACAGTTAGCTATCCTT--ATACTTCAAAC  88
      ||||||   |||||||   ||||||||||||||||||   ||||||||||
seq2  AAGGGCCGAATAGTAGGCTTGACAGTTAGCTATCCTTTATTACTTCAAAC  100

seq1  G-TCTACTGAGGGCTTAGCTG-TAAGACCTGGTGGCACAAACACTCA--C  134
      | |||||||| |||||||||| |||||||||||||||| ||||||||   
seq2  GTTCTACTGA-GGCTTAGCTGTTAAGACCTGGTGGCAC-AACACTCAACA  148

seq1  ATTCGCACTACGCACAGTAGAGA-GAGAAAACAGAATGGAATCTAGAAAC  183
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATTCGCACTACGCACAGTAGAGAGGAGAAAACAGAATGGAATCTAGAAAC  198

seq1  CCTGGTATGCAAGGCGTGGCAACATAATCATATCATCCCAACACTGCAGA  233
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTATGCAAGGCGTGGCAACATAATCATATCATCCCAACACTGCAGA  248

seq1  TGCTGAAACAGAC-GGATCTCGTCTCTGAGGCCACCCTGGGCTATATAGT  282
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGCTGAAACAGACGGGATCTCGTCTCTGAGGCCACCCTGGGCTATATAGT  298

seq1  AAGGCGATCCCCCAAACAGAAATAAATAAAAATATT-AAAAAAAAATAAA  331
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAGGCGATCCCCCAAACAGAAATAAATAAAAATATTAAAAAAAAAATAAA  348

seq1  TAAGTAAATAAATGCCTAGTTTGTCAAGCCATTGCCCCCTGAGAAGAAGA  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAAATAAATGCCTAGTTTGTCAAGCCATTGCCCCCTGAGAAGAAGA  398

seq1  AAGACTGATGCTGACTTCTGCTAGAAATACAGCAGAAATATTAGCAGACT  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGATGCTGACTTCTGCTAGAAATACAGCAGAAATATTAGCAGACT  448

seq1  AATATGGCTTCAGATCCCTGGGTTTGGTGAACTGAAACAACTCTCTCTAA  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGCTTCAGATCCCTGGGTTTGGTGAACTGAAACAACTCTCTCTAA  498

seq1  TGCCAGGCTGATCTTATAATAGTGTGAGGGAGAGAGAAAGACTCAAGTGC  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGCTGATCTTATAATAGTGTGAGGGAGAGAGAAAGACTCAAGTGC  548

seq1  AGAGACAGGAAAAGACTGGTAATTGTGCCTCTGTTGCCAGCACTGGTGTC  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGGAAAAGACTGGTAATTGTGCCTCTGTTGCCAGCACTGGTGTC  598

seq1  AAAGTTGCCCTGGGGTGTTGGAGCCTGTTCCCTTCAGAGCTACAGCAGAA  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGCCCTGGGGTGTTGGAGCCTGTTCCCTTCAGAGCTACAGCAGAA  648

seq1  GATCAGATCCTACATTCCCACCAAAAGGAGCTCTAAAAGGTGCCCAAGAC  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGATCCTACATTCCCACCAAAAGGAGCTCTAAAAGGTGCCCAAGAC  698

seq1  AAACTGACCCACTGACTGGAAGAAAGAGCTTCCATGAGAATTCAGAGTAC  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGACCCACTGACTGGAAGAAAGAGCTTCCATGAGAATTCAGAGTAC  748

seq1  AGGCCTGTTCTTCAAGCAGAGGCAGAGGCAACTGCCCTAACCTATCCTTA  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGTTCTTCAAGCAGAGGCAGAGGCAACTGCCCTAACCTATCCTTA  798

seq1  AATAGACTGGCCCCGCCACTTTCCACAGTTACCAAAAGGCAAAGTCACAA  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACTGGCCCCGCCACTTTCCACAGTTACCAAAAGGCAAAGTCACAA  848

seq1  CTGTTAAGATCCTCTTTTTATTTGTCTGTGTTTGTTGTTTTTTGATACAC  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAAGATCCTCTTTTTATTTGTCTGTGTTTGTTGTTTTTTGATACAC  898

seq1  GGTCTCTCTATGGAGCACAGGCTAGCCTAAAACTCTTTGTGTTAGACTAG  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTCTATGGAGCACAGGCTAGCCTAAAACTCTTTGTGTTAGACTAG  948

seq1  GTGGGCTTCAAACTTATAATCCTTCTGCTTTGACTTCTTCGATGCTGAGA  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTTCAAACTTATAATCCTTCTGCTTTGACTTCTTCGATGCTGAGA  998

seq1  TATTGAGATCTTAGCTGGGCTCCACATGGTGGCACAGCTCCATAATTTCT  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGATCTTAGCTGGGCTCCACATGGTGGCACAGCTCCATAATTTCT  1048

seq1  GTAATCCAAGTACGCGGGAGGCAGAGGCAGGAAGACTGTCACAAATTAGA  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCCAAGTACGCGGGAGGCAGAGGCAGGAAGACTGTCACAAATTAGA  1098

seq1  GTCTACCCTGGGCTACCTACATAGAGAATTC  1112
      |||||||||||||||||||||||||||||||
seq2  GTCTACCCTGGGCTACCTACATAGAGAATTC  1129