BAC Information

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BAC

Clone NameB6Ng01-212D07
Chromosome14 (Build37)
Map Location 43,339,358 - 43,537,641
singlet/doubletdoublet
Overlap geneLOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415
Upstream geneLOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228, LOC666233, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910, LOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249
Downstream geneLOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212D07.bB6Ng01-212D07.g
ACCGA030063GA030064
length1,1901,176
definitionB6Ng01-212D07.b B6Ng01-212D07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,536,483 - 43,537,641)(43,339,358 - 43,340,531)
sequence
gaattcagaacaatatactacccaatgaaaagcccagggacaagtttggg
ttatcttgtttggggttggtcatcattgagtctcatacactctccccaat
cattaaagactgatgccattgctcttccttcctttctggaagataatggt
aagaacacattgctgaagaagatggtatctggcacaggtatcaattcagg
catctatctcagtattttctgtgtgttgagaacatatttattattctttt
gcagttacttggagatatttggcccattgtaacccaccaaatttctatag
aagtgataatcccttggtagccgagattgcaactccctgtgttccatcac
cctcccaacttctgtcttaagatctggcaactgttattctattttcagct
tctctaagtgagctaaactaaagagggagcccagggcctcatgcatacca
agcagcaaacactgcaggagaatacactacacttcaccaaaacacactgc
accacaccacaccacactacactagagcacccacagtcctcctgtttctc
tgagatcaacttactttcttagccctttctcagccttcctgcatggatta
tctgccaagacaaggtgaatgtaataaaccaaagtgaacattttctactt
tcataatccacattgaaatttgctgtgaactctgtgcagagtacagagac
aaggaaagacttccccctcttcccctatgtattcaacatagtctttgaca
ttttagccagagcaatcaggcaaaaatgccgatcaaagtgatacaaattt
gaagggaggaattcaagacactacaatttgaggagtatgggatattatac
ataagtgagcccccaaaaaatccaggagagaactcctacagctgataaac
cacttcagcaaagtcaatggatacaaattaactcgaacaatccaggaact
ttcctctactcaaggataattatactgaggaagagatttttttaaactac
atacttcacaatagtcacaaacaatatcttggtggtgactcgaacaaagc
aagggaaagatctgaattgacaagaacataaggtctctgcacaaagaaat
tcaaagaagaaccgtagaaggatggaaaatcttccatgggtcatttgaat
ggacaggataatataggtaaaaaaacgtccaatcttgcca
gaattctggattagctcagaggtgactagcccaggagtattgaggggcct
tctgttggagacttagatggcaagactctgtaggcaaaggctttttctcc
atgtaacccacagttggtttgatgagagagacagtccttggttgtaaact
gtttattgcttttcatggaaaagaaagcataacatgtctcgaggttagac
tagaagttaagtaccttgtgaggaaggaatgtccaggaagggaaggttat
tgactgaaccctaccatcttctaggtacctcattagcagggaaaacccta
ttctgttctaaatgaccacaggccatgttcctatgtagagattttggtcc
catgaaagaggcctgctaggaagcaggtgacacttttgctatctacttta
ggtctgggacttccaacccactcaaatttaccaaattctggacatggtag
tctactgtcccaggtcttagtctgagatttattgatattaggaaacacca
ggacatatgtttagtatgcaggtctcagtgcctaccctccacactgacac
actgtttctaacaaggccacaactcctaaaagtaacacccccatattcaa
gccaccacactcctctgcaatctcccaagacatttacctcactctgtcct
actgttttcctttttctccttcacaaattatgtgttctattattttcttg
aaatatactcctataacccaacaatagtgcattaccttctatggatactg
cagtttaaatacacatctctagacattcaatgttaccatcctcataagac
acatcatgagttccttgtctttttgggtgtggggtcatatcactcaggaa
agattattcatgtctctatccattaacctgtaaatttcatttatattgtc
acagttcattaccattgtgtatatgaaccatatattctttatcctttcat
cagttatattacatctgggttgttttgatttttctgactatgtgaataat
gcagcaaggaacatgagcacaccctgtcttctgtcttaggataatgcctt
tggcctatatgctctgaaatagtgtctgagtctggtgttctctgctagaa
aagaagacaccagaaccatgataggtccttttattgagaggcattgaatt
ggggctgctaccatttcgaaccttag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_43536483_43537641
seq2: B6Ng01-212D07.b_71_1236 (reverse)

seq1  TGGCAAGA-TGGACGTTTTTT--ACTATATTAATCCTGCTCAT--CAATG  45
      |||||||| ||||||||||||   ||||||| ||||||  |||   ||||
seq2  TGGCAAGATTGGACGTTTTTTTACCTATATT-ATCCTGTCCATTCAAATG  49

seq1  A-CCATGGGAGATTTTTCCAT-CTTCTACGG-TCTTCTTTG-ATTTCTTT  91
      | |||||| ||| |||||||| ||||||||| ||||||||| ||||||||
seq2  ACCCATGGAAGA-TTTTCCATCCTTCTACGGTTCTTCTTTGAATTTCTTT  98

seq1  GTGCAGAGACTTAATGTTCTTGTC-ATTCAGATCTTTCCCTTGCTTTGTT  140
      |||||||||| | ||||||||||| |||||||||||||||||||||||||
seq2  GTGCAGAGACCTTATGTTCTTGTCAATTCAGATCTTTCCCTTGCTTTGTT  148

seq1  CGAGTCA-CACCAAGATATTGTTTGTGACTATTGTGAAGTATGTAGTTTT  189
      ||||||| ||||||||||||||||||||||||||||||||||||||||| 
seq2  CGAGTCACCACCAAGATATTGTTTGTGACTATTGTGAAGTATGTAGTTTA  198

seq1  AAAAAATCTCTTCCTCAGTATAATTATCCTTTGAGTAGAGGAAAGTTCCT  239
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAAAAATCTCTTCCTCAGTATAATTATCC-TTGAGTAGAGGAAAGTTCCT  247

seq1  GGATTGTTCGAGTTAATTTTGTATCCATTGACTTTGCTGAAGTGGTTTAT  289
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGATTGTTCGAGTTAA-TTTGTATCCATTGACTTTGCTGAAGTGGTTTAT  296

seq1  CAGCTGTAGGAGTTCTCTCCTGGATTTTTTGGGGGCTCACTTATGTATAA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTAGGAGTTCTCTCCTGGATTTTTTGGGGGCTCACTTATGTATAA  346

seq1  TATCCCATACTCCTCAAATTGTAGTGTCTTGAATTCCTCCCTTCAAATTT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCATACTCCTCAAATTGTAGTGTCTTGAATTCCTCCCTTCAAATTT  396

seq1  GTATCACTTTGATCGGCATTTTTGCCTGATTGCTCTGGCTAAAATGTCAA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCACTTTGATCGGCATTTTTGCCTGATTGCTCTGGCTAAAATGTCAA  446

seq1  AGACTATGTTGAATACATAGGGGAAGAGGGGGAAGTCTTTCCTTGTCTCT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATGTTGAATACATAGGGGAAGAGGGGGAAGTCTTTCCTTGTCTCT  496

seq1  GTACTCTGCACAGAGTTCACAGCAAATTTCAATGTGGATTATGAAAGTAG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCTGCACAGAGTTCACAGCAAATTTCAATGTGGATTATGAAAGTAG  546

seq1  AAAATGTTCACTTTGGTTTATTACATTCACCTTGTCTTGGCAGATAATCC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTCACTTTGGTTTATTACATTCACCTTGTCTTGGCAGATAATCC  596

seq1  ATGCAGGAAGGCTGAGAAAGGGCTAAGAAAGTAAGTTGATCTCAGAGAAA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGAAGGCTGAGAAAGGGCTAAGAAAGTAAGTTGATCTCAGAGAAA  646

seq1  CAGGAGGACTGTGGGTGCTCTAGTGTAGTGTGGTGTGGTGTGGTGCAGTG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGACTGTGGGTGCTCTAGTGTAGTGTGGTGTGGTGTGGTGCAGTG  696

seq1  TGTTTTGGTGAAGTGTAGTGTATTCTCCTGCAGTGTTTGCTGCTTGGTAT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGGTGAAGTGTAGTGTATTCTCCTGCAGTGTTTGCTGCTTGGTAT  746

seq1  GCATGAGGCCCTGGGCTCCCTCTTTAGTTTAGCTCACTTAGAGAAGCTGA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAGGCCCTGGGCTCCCTCTTTAGTTTAGCTCACTTAGAGAAGCTGA  796

seq1  AAATAGAATAACAGTTGCCAGATCTTAAGACAGAAGTTGGGAGGGTGATG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAATAACAGTTGCCAGATCTTAAGACAGAAGTTGGGAGGGTGATG  846

seq1  GAACACAGGGAGTTGCAATCTCGGCTACCAAGGGATTATCACTTCTATAG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAGGGAGTTGCAATCTCGGCTACCAAGGGATTATCACTTCTATAG  896

seq1  AAATTTGGTGGGTTACAATGGGCCAAATATCTCCAAGTAACTGCAAAAGA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGGTGGGTTACAATGGGCCAAATATCTCCAAGTAACTGCAAAAGA  946

seq1  ATAATAAATATGTTCTCAACACACAGAAAATACTGAGATAGATGCCTGAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAATATGTTCTCAACACACAGAAAATACTGAGATAGATGCCTGAA  996

seq1  TTGATACCTGTGCCAGATACCATCTTCTTCAGCAATGTGTTCTTACCATT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACCTGTGCCAGATACCATCTTCTTCAGCAATGTGTTCTTACCATT  1046

seq1  ATCTTCCAGAAAGGAAGGAAGAGCAATGGCATCAGTCTTTAATGATTGGG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCAGAAAGGAAGGAAGAGCAATGGCATCAGTCTTTAATGATTGGG  1096

seq1  GAGAGTGTATGAGACTCAATGATGACCAACCCCAAACAAGATAACCCAAA  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGTATGAGACTCAATGATGACCAACCCCAAACAAGATAACCCAAA  1146

seq1  CTTGTCCCTGGGCTTTTCAT  1159
      ||||||||||||||||||||
seq2  CTTGTCCCTGGGCTTTTCAT  1166

seq1: chr14_43339358_43340531
seq2: B6Ng01-212D07.g_66_1241

seq1  GAATTCTGGATTAGCTCAGAGGTGACTAGCCCAGGAGTATTGAGGGGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGATTAGCTCAGAGGTGACTAGCCCAGGAGTATTGAGGGGCCT  50

seq1  TCTGTTGGAGACTTAGATGGCAAGGCTCTGTAGGCAAAGGCTTTTTCTCC  100
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCTGTTGGAGACTTAGATGGCAAGACTCTGTAGGCAAAGGCTTTTTCTCC  100

seq1  ATGTAACCCACAGTTGGTTTGATGAGAGAGACAGTCCTTGGTTGTAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACCCACAGTTGGTTTGATGAGAGAGACAGTCCTTGGTTGTAAACT  150

seq1  GTTTATTGCTTTTCATGGAAAAGAAAGCATAACATGTCTTGAGGTTAGAC  200
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTTTATTGCTTTTCATGGAAAAGAAAGCATAACATGTCTCGAGGTTAGAC  200

seq1  TAGAAGTTAAGTACCTTGTGAGGAAGGAATGTCCAGGAAGGGAAGGTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTTAAGTACCTTGTGAGGAAGGAATGTCCAGGAAGGGAAGGTTAT  250

seq1  TGACTGAACCCTACCATCTTCTAGGTACCTCATTAGCAGGGAAAACCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAACCCTACCATCTTCTAGGTACCTCATTAGCAGGGAAAACCCTA  300

seq1  TTCTGTTCTAAATGACCACAGGCCATGTTCCTATGTAGAGATTTTGGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCTAAATGACCACAGGCCATGTTCCTATGTAGAGATTTTGGTCC  350

seq1  CATGAAAGAGGCCTGCTAGGAAGCAGGTGACACTTTTGCCATCTACTTTA  400
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CATGAAAGAGGCCTGCTAGGAAGCAGGTGACACTTTTGCTATCTACTTTA  400

seq1  GGTCTGGGACTTCCAACCCACTCAAATTTACCAAATTCTGGACATGGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGGGACTTCCAACCCACTCAAATTTACCAAATTCTGGACATGGTAG  450

seq1  TCTACTGTCCCAGGTCTTAGTCTGAGATTTATTGATATGAGGAAACACCA  500
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCTACTGTCCCAGGTCTTAGTCTGAGATTTATTGATATTAGGAAACACCA  500

seq1  GGACATATGTTTAGTATGCGGGTCTCAGTGCCTACCCTCCACACTGACAC  550
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGACATATGTTTAGTATGCAGGTCTCAGTGCCTACCCTCCACACTGACAC  550

seq1  AATGTTTCTAACAAGGCCACAACTCCTAAAAGTAACACCCCCATATTCAA  600
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTCTAACAAGGCCACAACTCCTAAAAGTAACACCCCCATATTCAA  600

seq1  GCCACCACACTCCTCTGCAATCTCCCAAGACATTTACCTCACTCTGTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCACACTCCTCTGCAATCTCCCAAGACATTTACCTCACTCTGTCCT  650

seq1  ACTGTTTTCCTTTTTCTCCTTCACAAATTATGTGTTCTATTATTTTCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTTCCTTTTTCTCCTTCACAAATTATGTGTTCTATTATTTTCTTG  700

seq1  AAATATCCTCCTATAACCCAACACTAGTGCATTACCTTCTATGGATACTG  750
      |||||| |||||||||||||||| ||||||||||||||||||||||||||
seq2  AAATATACTCCTATAACCCAACAATAGTGCATTACCTTCTATGGATACTG  750

seq1  AAGTTTAAATGCACATCTCTAGACATTCAATGTTACCATCCTCATAAGAC  800
       ||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTAAATACACATCTCTAGACATTCAATGTTACCATCCTCATAAGAC  800

seq1  ACATCATGAGTTCCTTGTCTTTTTGGGTGT-GGGTCATATCACTCA-GAA  848
      |||||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  ACATCATGAGTTCCTTGTCTTTTTGGGTGTGGGGTCATATCACTCAGGAA  850

seq1  AGATTATTCATGTCTCTATCCATTAACCTGTAAATTTCATTTATATTGTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATTCATGTCTCTATCCATTAACCTGTAAATTTCATTTATATTGTC  900

seq1  ACAGTTCACTACCATTGTGTATATGAACCATATATTCTTTATCCTTTCAT  948
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCATTACCATTGTGTATATGAACCATATATTCTTTATCCTTTCAT  950

seq1  CAGTTATATTACATCTGGGTTGTTTTGA-TTTCCTGACTATTGTGAATAA  997
      |||||||||||||||||||||||||||| ||| ||||||| |||||||||
seq2  CAGTTATATTACATCTGGGTTGTTTTGATTTTTCTGACTA-TGTGAATAA  999

seq1  TGCAGCAAGGAACATGAGCACACCCTGGTCTCTGTCTTAGGATAATGCCT  1047
      |||||||||||||||||||||||||||   ||||||||||||||||||||
seq2  TGCAGCAAGGAACATGAGCACACCCTGTCTTCTGTCTTAGGATAATGCCT  1049

seq1  TTGG-CTATATGCCCTGAAATAGTGTCTGAGTCT-GTGTTCTCTTGCTAG  1095
      |||| |||||||| |||||||||||||||||||| |||||||| ||||||
seq2  TTGGCCTATATGCTCTGAAATAGTGTCTGAGTCTGGTGTTCTC-TGCTAG  1098

seq1  AAA--GAGACACCAGGACCATGATAGGTCCTTTTAATGAGA-GCATTTAA  1142
      |||   ||||||||| ||||||||||||||||||| ||||| ||||| ||
seq2  AAAAGAAGACACCAGAACCATGATAGGTCCTTTTATTGAGAGGCATTGAA  1148

seq1  ATGGGGGGCTGCTTACCATTTCAGAACTTTAG  1174
       |  |||||||| ||||||||| |||| ||||
seq2  TT--GGGGCTGC-TACCATTTC-GAACCTTAG  1176