BAC Information

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BAC

Clone NameB6Ng01-212K20
Chromosome14 (Build37)
Map Location 57,143,319 - 57,282,714
singlet/doubletdoublet
Overlap geneRnf17, Cenpj, Parp4
Upstream genePck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a
Downstream geneLOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140, Cryl1, LOC668090, AU040096, Ift88, Il17d, N6amt2, Xpo4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212K20.bB6Ng01-212K20.g
ACCGA030414GA030415
length957137
definitionB6Ng01-212K20.b B6Ng01-212K20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,143,319 - 57,144,278)(57,282,578 - 57,282,714)
sequence
gaattccttataaatgcatctccgatatctttaaatgcatctcagatatt
tgtatttctcaaaagatggaattctctaagaactctcttccatagtttgt
tgcacaaggcctttctacctcttgaacaccattatcgatgactccttgta
cttgtaaatgtagtagtgggtgaggggcaagcacaacaggacaatttgta
ccacaaataatttatgctcattctcaaatagcaggcatacagaaccattg
gcgacctagctaacaaacagcaccactagaaccgagtacagcattaaggc
aagggttaaagtaacactttttgtttttcaggtgcacaagagctcctgca
gctgtccagaaaaaaagttttctgttagatttgtaccacttcaggtttga
ttttaacttgttctgcagtggtatcagtttttttcctcctttagtcttac
ttggtaaattgttaaggaatggtgtggtgaaaagttaatattttctttaa
aacgtttttgtttttactgtcctttcaaaataaaatttagtcatatagaa
attttagttcatgttattaagattctgtttaagaaatactagaattgttg
aagatcctgaaatgtctcacccatgggcaccctcagtcccttacagaggt
gagtatgactgagagggtatctgtaattattagataagtcttggtggctt
tgctgtatgtgagtatagtaaagggaaacctaggtaacattttcattgtc
ttcactgccttgtggtggcagctctactaactcaaggcccatctgagtgc
atgatcttgttgttagatacactggcagttactggacgtttttgttgttt
ttcatcagattcttctagagggcttctaatcatgttgagaagtttgccta
ttgtgtgcattagtagagggtttgctgagtcaggagctattactttgaaa
aatagct
ctcacgcttggaatctcagttcttactgtgcactctttgcagtactcact
aacacaagacattccatgtttgccaggaccagcttgtaactaaagccatg
caaaggctgtaaagctccctcgggggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_57143319_57144278
seq2: B6Ng01-212K20.b_49_1005

seq1  GAATTCCTTATAAATGCATCTCCGATATCTTTAAATGCATCTCAGATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATAAATGCATCTCCGATATCTTTAAATGCATCTCAGATATT  50

seq1  TGTATTTCTCAAAAGATGGAATTCTCTAAGAACTCTCTTCCATAGTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTCTCAAAAGATGGAATTCTCTAAGAACTCTCTTCCATAGTTTGT  100

seq1  TGCACAAGGCCTTTCTACCTCTTGAACACCATTATCGATGACTCCTTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAAGGCCTTTCTACCTCTTGAACACCATTATCGATGACTCCTTGTA  150

seq1  CTTGTAAATGTAGTAGTGGGTGAGGGGCAAGCACAACAGGACAATTTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAATGTAGTAGTGGGTGAGGGGCAAGCACAACAGGACAATTTGTA  200

seq1  CCACAAATAATTTATGCTCATTCTCAAATAGCAGGCATACAGAACCATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAATAATTTATGCTCATTCTCAAATAGCAGGCATACAGAACCATTG  250

seq1  GCGACCTAGCTAACAAACAGCACCACTAGAACCGAGTACAGCATTAAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACCTAGCTAACAAACAGCACCACTAGAACCGAGTACAGCATTAAGGC  300

seq1  AAGGGTTAAAGTAACACTTTTTGTTTTTCAGGTGCACAAGAGCTCCTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTAAAGTAACACTTTTTGTTTTTCAGGTGCACAAGAGCTCCTGCA  350

seq1  GCTGTCCAGAAAAAAAGTTTTCTGTTAGATTTGTACCACTTCAGGTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCAGAAAAAAAGTTTTCTGTTAGATTTGTACCACTTCAGGTTTGA  400

seq1  TTTTAACTTGTTCTGCAGTGGTATCAGTTTTTTTCCTCCTTTAGTCTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACTTGTTCTGCAGTGGTATCAGTTTTTTTCCTCCTTTAGTCTTAC  450

seq1  TTGGTAAATTGTTAAGGAATGGTGTGGTGAAAAGTTAATATTTTCTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAAATTGTTAAGGAATGGTGTGGTGAAAAGTTAATATTTTCTTTAA  500

seq1  AACGTTTTTGTTTTTACTGTCCTTTCAAAATAAAATTTAGTCATATAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTTTTGTTTTTACTGTCCTTTCAAAATAAAATTTAGTCATATAGAA  550

seq1  ATTTTAGTTCATGTTATTAAGATTCTGTTTAAGAAATACTAGAATTGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGTTCATGTTATTAAGATTCTGTTTAAGAAATACTAGAATTGTTG  600

seq1  AAGATCCTGAAATGTCTCACCCATGGGCACCCTCAGTCCCTTACAGAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCCTGAAATGTCTCACCCATGGGCACCCTCAGTCCCTTACAGAGGT  650

seq1  GAGTATGACTGAGAGGGTATCTGTAATTATTAGATAAGTCTTGGTGGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATGACTGAGAGGGTATCTGTAATTATTAGATAAGTCTTGGTGGCTT  700

seq1  TGCTGTATGTGAGTATAGTAAGGGGAAACCTAGGTAACATTTTCATTGTC  750
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGCTGTATGTGAGTATAGTAAAGGGAAACCTAGGTAACATTTTCATTGTC  750

seq1  TTCACTGCCTTGTGGTGGCAGCTCTACTAACTCAAGGCCCATCTGAGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGCCTTGTGGTGGCAGCTCTACTAACTCAAGGCCCATCTGAGTGC  800

seq1  ATGATCTTGTTGTTAGATACACTGGCAGTTACTGGACGTTTTTGTTGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATGATCTTGTTGTTAGATACACTGGCAGTTACTGGACGTTTTTGTTG-TT  849

seq1  TTTCATCAGATTCTCCTAGAGGGC-TCTAATCCATG-TGAGAGGTTTGCC  898
      |||||||||||||| ||||||||| |||||| |||| ||||| |||||||
seq2  TTTCATCAGATTCTTCTAGAGGGCTTCTAAT-CATGTTGAGAAGTTTGCC  898

seq1  TA-TGTGTGCA-TAGTAGAGGGGTTTGCTGAGTCAGGAGGCAATTACTTT  946
      || |||||||| ||||||| |||||||||||||||||| || ||||||||
seq2  TATTGTGTGCATTAGTAGA-GGGTTTGCTGAGTCAGGA-GCTATTACTTT  946

seq1  TGAAAAAAATAGCT  960
          ||||||||||
seq2  ---GAAAAATAGCT  957

seq1: chr14_57282578_57282714
seq2: B6Ng01-212K20.g_72_208 (reverse)

seq1  CCCCCCCCCCCCCCCCGAGGGAGCTTTACAGCCTTTGCATGGCTTTAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCCCCCGAGGGAGCTTTACAGCCTTTGCATGGCTTTAGTT  50

seq1  ACAAGCTGGTCCTGGCAAACATGGAATGTCTTGTGTTAGTGAGTACTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTGGTCCTGGCAAACATGGAATGTCTTGTGTTAGTGAGTACTGCA  100

seq1  AAGAGTGCACAGTAAGAACTGAGATTCCAAGCGTGAG  137
      |||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGCACAGTAAGAACTGAGATTCCAAGCGTGAG  137