BAC Information

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BAC

Clone NameB6Ng01-212L07
Chromosome14 (Build37)
Map Location 18,491,189 - 18,607,544
singlet/doubletdoublet
Overlap genenone
Upstream geneTpi-rs9
Downstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212L07.bB6Ng01-212L07.g
ACCGA030436GA030437
length7991,074
definitionB6Ng01-212L07.b B6Ng01-212L07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,491,189 - 18,491,983)(18,606,459 - 18,607,544)
sequence
gaattcccatgacactgtgttgtgtaacagattcttatggtaacccctta
ccaccaccccaccagctctgctctctcaatacccattcaaatagaatcct
accaaatttcctgttggagcgttgcgattatataacactgttacaaccag
tcttgtaagccgtttaatactttcactgattctcatttcataactttcca
agcaaaatgaaatcagacaaaaccatctgaacaaagaaaagtaatctttt
gatgttgttgttatagttcatttttagtatgtggttttcttcagaaagaa
tttaagaaaaaacatagctcagaattatactagaagtataacgtccaggg
attccgggtttcccaggggcctcttgaattcccctttctaacttattaca
gagctgttcacaagtctccccccccccccccccccccccgacctgggcca
agccaggcttttccttgcagccaccagggggctgtctggttaggaactgg
gtaggagaagctgcagctttcctccaaaccaaccaaaacctcccaaggca
gctttggagcaaagcccaggaactctcctgcaaaacaaccttcactctag
agccggcaagttcttagtgaagcttcattccgggtgaggaattaaacacg
gatttcttacaaagaattcaaagggcagccaagtctgtgctgggccgcgg
ggataggcaacgttctagccgctgctttctctcctgagtcctgcttctga
ttcgccccagttgtttaatgattatgacaggagggggtgttcggccttt

gaattcaaatagctttgcaaaaattcaacagttttaagcacaggttgcag
gacaaatatttacttttaaaatgattctatgccttacaatgttttacata
gagtagaagtgactaattttctttccttttgtttattgttttagtaacta
atttttgacaaaatactttgtctctcataaattaaagggaacctttaggc
tgctctttgcccatgatctgaagcaatggtccacttgcaaacacactgat
ggcaagaaagagctatagaatctgctaagaatgtagtcctttacctaatc
ttgatccttcctaaaagtaaggaaatattcagtgcagggcattttgactg
caagggtgagtttccagtcataaaacttcacaagtgaccagactctccag
gtccttggatgacgccttggaggtcagccatgagtcctggctgctggaac
aagaacataaacgtgaccattttccctacatttgttagggtgacactgca
aaaggccacacaaacctttgaccagctgtctatgaaggtatattggatac
tagggaatcaaaacaggatgcctaaacacacagtcacctcacaatgcact
tctaatggaaaaactcaagaaacaggtacatttttcaagtaggtaaagta
atttaattatttaaagtagaaaagacccaggggcaagctaagtcaaatgg
tgtgcatttaattataatgcactgaatttggggagtctcaggaaaaacat
taaatatgaaatattttcagaggcagcactcatatgtatggctaaaggga
tgtatattcaaatatttatattaataaaacaaatattcttcctgacatat
aaacagaaatggatgtagaaagtactatatattattattttcttctgtgt
ttaaagaatttaataagtatccagatatctgttttatatgtgtttataat
gttttatttgtttccttttttttttctttttttgccagcgctggggtcac
caaggactgtacacgctaagctctgtacttttatccactgaggtttaccc
gagtccgtctattttttataaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_18491189_18491983
seq2: B6Ng01-212L07.b_51_849

seq1  GAATTCCCATGACACTGTGTTGTGTAACAGATTCTTATGGTAACCCCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATGACACTGTGTTGTGTAACAGATTCTTATGGTAACCCCTTA  50

seq1  CCACCACCCCACCAGCTCTGCTCTCTCAATACCCATTCAAATAGAATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCCCACCAGCTCTGCTCTCTCAATACCCATTCAAATAGAATCCT  100

seq1  ACCAAATTTCCTGTTGGAGCGTTGCGATTATATAACACTGTTACAACCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATTTCCTGTTGGAGCGTTGCGATTATATAACACTGTTACAACCAG  150

seq1  TCTTGTAAGCCGTTTAATACTTTCACTGATTCTCATTTCATAACTTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTAAGCCGTTTAATACTTTCACTGATTCTCATTTCATAACTTTCCA  200

seq1  AGCAAAATGAAATCAGACAAAACCATCTGAACAAAGAAAAGTAATCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATGAAATCAGACAAAACCATCTGAACAAAGAAAAGTAATCTTTT  250

seq1  GATGTTGTTGTTATAGTTCATTTTTAGTATGTGGTTTTCTTCAGAAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGTTGTTATAGTTCATTTTTAGTATGTGGTTTTCTTCAGAAAGAA  300

seq1  TTTAAGAAAAAACATAGCTCAGAATTATACTAGAAGTATAACGTCCAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAAAAAACATAGCTCAGAATTATACTAGAAGTATAACGTCCAGGG  350

seq1  ATTCCGGGTTTCCCAGGGGCCTCTTGAATTCCCCTTTCTAACTTATTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCGGGTTTCCCAGGGGCCTCTTGAATTCCCCTTTCTAACTTATTACA  400

seq1  GAGCTGTTCACAAGTCTCCCCCCCCCCCCCCCCCCCCCCCGACCTGGGCC  450
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAGCTGTTCACAAGTCT-CCCCCCCCCCCCCCCCCCCCCCGACCTGGGCC  449

seq1  AAGCCAGGCTTTTCCTTGCAGCCACCAGGGGGCTGTCTGGTTAGGAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGGCTTTTCCTTGCAGCCACCAGGGGGCTGTCTGGTTAGGAACTG  499

seq1  GGTAGGAGAAGCTGCAGCTTTCCTCCAAACCAACCAAAACCTCCCAAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGAGAAGCTGCAGCTTTCCTCCAAACCAACCAAAACCTCCCAAGGC  549

seq1  AGCTTTGGAGCAAAGCCCAGGAACTCGCCTGCAAAACAACCTTCACTCTA  600
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGCTTTGGAGCAAAGCCCAGGAACTCTCCTGCAAAACAACCTTCACTCTA  599

seq1  GAGCCGGCAAGTTCTTAGTGAAGCTTCATTCCGGGTGAGGAATAAAACAC  650
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAGCCGGCAAGTTCTTAGTGAAGCTTCATTCCGGGTGAGGAATTAAACAC  649

seq1  GGATTTCTTACAAAGAATTCAAAGGGCAGCCGAGTCTGTGCT-GGCCGCG  699
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  GGATTTCTTACAAAGAATTCAAAGGGCAGCCAAGTCTGTGCTGGGCCGCG  699

seq1  GGGAAAGGCAACGTTCTAGCAGCTGCTTTCTCTCCTGAGTCCTGCTTCTG  749
      |||| ||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGGATAGGCAACGTTCTAGCCGCTGCTTTCTCTCCTGAGTCCTGCTTCTG  749

seq1  ACTCGCCACAGTTG-TTAATG-CTGTGACAGGA-GGTGTGTT-GGCCTTT  795
      | ||||| |||||| ||||||  | |||||||| || ||||| |||||||
seq2  ATTCGCCCCAGTTGTTTAATGATTATGACAGGAGGGGGTGTTCGGCCTTT  799


seq1: chr14_18606459_18607544
seq2: B6Ng01-212L07.g_68_1141 (reverse)

seq1  TCTTTAAAAAAAAATGACAGGACTGGGGTAAACCTCAGTGG--TAAAGTA  48
      |||||| ||||||  ||| ||||| ||||||||||||||||   ||||||
seq2  TCTTTATAAAAAATAGAC-GGACTCGGGTAAACCTCAGTGGATAAAAGTA  49

seq1  CAG-GCCTAGCGTGTACAGGCCCTGGGTTTGACCCCAGCGCTGCAAAAAA  97
      ||| || |||||||||||| || |||   ||||||||||||||       
seq2  CAGAGCTTAGCGTGTACAGTCCTTGG---TGACCCCAGCGCTG-----GC  91

seq1  AAAAAAAAAAAAAAAAAAAGAAACAAAATAAAAACATTATAAACACATAT  147
      ||||||| |||||||||| ||||||||   ||||||||||||||||||||
seq2  AAAAAAAGAAAAAAAAAAGGAAACAAA--TAAAACATTATAAACACATAT  139

seq1  AAAAACAGATATCTGGATACTTATTTAAATTCTTTAAAACACAGAAGAAA  197
       |||||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  -AAAACAGATATCTGGATACTTA-TTAAATTCTTT-AAACACAGAAGAAA  186

seq1  ATAATAATATATAGTACTTTCTACATCCATTTCTGTTTATATTGTCAGGA  247
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATAATAATATATAGTACTTTCTACATCCATTTCTGTTTATA-TGTCAGGA  235

seq1  AGAATATTTGTTTTATTAATATAAATATTTGAATATACATCCCTTTAGCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATTTGTTTTATTAATATAAATATTTGAATATACATCCCTTTAGCC  285

seq1  ATACATATGAGTGCTGCCTCTGAAAATATTTCATATTTAATGTTTTTCCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATGAGTGCTGCCTCTGAAAATATTTCATATTTAATGTTTTTCCT  335

seq1  GAGACTCCCCAAATTCAGTGCATTATAATTAAATGCACACCATTTGACTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCCCCAAATTCAGTGCATTATAATTAAATGCACACCATTTGACTT  385

seq1  AGCTTGCCCCTGGGTCTTTTCTACTTTAAATAATTAAATTACTTTACCTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCCCCTGGGTCTTTTCTACTTTAAATAATTAAATTACTTTACCTA  435

seq1  CTTGAAAAATGTACCTGTTTCTTGAGTTTTTCCATTAGAAGTGCATTGTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAAATGTACCTGTTTCTTGAGTTTTTCCATTAGAAGTGCATTGTG  485

seq1  AGGTGACTGTGTGTTTAGGCATCCTGTTTTGATTCCCTAGTATCCAATAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACTGTGTGTTTAGGCATCCTGTTTTGATTCCCTAGTATCCAATAT  535

seq1  ACCTTCATAGACAGCTGGTCAAAGGTTTGTGTGGCCTTTTGCAGTGTCAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCATAGACAGCTGGTCAAAGGTTTGTGTGGCCTTTTGCAGTGTCAC  585

seq1  CCTAACAAATGTAGGGAAAATGGTCACGTTTATGTTCTTGTTCCAGCAGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACAAATGTAGGGAAAATGGTCACGTTTATGTTCTTGTTCCAGCAGC  635

seq1  CAGGACTCATGGCTGACCTCCAAGGCGTCATCCAAGGACCTGGAGAGTCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTCATGGCTGACCTCCAAGGCGTCATCCAAGGACCTGGAGAGTCT  685

seq1  GGTCACTTGTGAAGTTTTATGACTGGAAACTCACCCTTGCAGTCAAAATG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTTGTGAAGTTTTATGACTGGAAACTCACCCTTGCAGTCAAAATG  735

seq1  CCCTGCACTGAATATTTCCTTACTTTTAGGAAGGATCAAGATTAGGTAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCACTGAATATTTCCTTACTTTTAGGAAGGATCAAGATTAGGTAAA  785

seq1  GGACTACATTCTTAGCAGATTCTATAGCTCTTTCTTGCCATCAGTGTGTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTACATTCTTAGCAGATTCTATAGCTCTTTCTTGCCATCAGTGTGTT  835

seq1  TGCAAGTGGACCATTGCTTCAGATCATGGGCAAAGAGCAGCCTAAAGGTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTGGACCATTGCTTCAGATCATGGGCAAAGAGCAGCCTAAAGGTT  885

seq1  CCCTTTAATTTATGAGAGACAAAGTATTTTGTCAAAAATTAGTTACTAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTAATTTATGAGAGACAAAGTATTTTGTCAAAAATTAGTTACTAAA  935

seq1  ACAATAAACAAAAGGAAAGAAAATTAGTCACTTCTACTCTATGTAAAACA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAACAAAAGGAAAGAAAATTAGTCACTTCTACTCTATGTAAAACA  985

seq1  TTGTAAGGCATAGAATCATTTTAAAAGTAAATATTTGTCCTGCAACCTGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGGCATAGAATCATTTTAAAAGTAAATATTTGTCCTGCAACCTGT  1035

seq1  GCTTAAAACTGTTGAATTTTTGCAAAGCTATTTGAATTC  1086
      |||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAACTGTTGAATTTTTGCAAAGCTATTTGAATTC  1074


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