BAC Information

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BAC

Clone NameB6Ng01-213A18
Chromosome14 (Build37)
Map Location 118,861,367 - 119,031,935
singlet/doubletdoublet
Overlap geneAbcc4
Upstream geneGpc6, 5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422
Downstream geneCldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2, Hs6st3, LOC619601
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213A18.bB6Ng01-213A18.g
ACCGA030685GA030686
length1,120815
definitionB6Ng01-213A18.b B6Ng01-213A18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,861,367 - 118,862,467)(119,031,123 - 119,031,935)
sequence
gaattccacagaattaaagcaggcttctaaaactaacaatagctctttgg
gggaaccggtgggaattgtgaaacctcttgttttccagaaaagactcagt
aggggaaatttgaagcttccctctccggatgtgcacagtgagtacagctg
tcagctgcctcacctgtctgagtggctacggaggtgaatcccagaggcat
gaatggaggcttgccaagagattccgcactgtagctctgccctcaaatgc
ccctcaggtagagggtggggactggaaaacgtttgcacgtgataactttc
cattaactcattgtctggggtgcagttcccacagtcagttgggctgtttg
ggccactgtagaattgactatcacctggttgacttaattgttttataaag
gccaaaatcaagggaaatgttcagcattccagagcccaatgagtaataat
ccagagtcaacactcggccagggaaagtatcgttgttagcacaatgatgt
ctagttctccatttttttcctgatttgaattatctgatgttctagaacat
ctcatctccaagtacaatctctcctggatgctgggcctgggtgatacaat
cagttgccatgtcttgacagggagtgtggcttttattatcataagcatgg
tgttcttagagccagaaaggacttgggacattacttcgccacaactatga
aatcctcttcatgtctttttcctgaaaagccgaaccttggccaaggaaga
tgctacagtgggtataagtggttgtcacacaaacctgacaacctgaacta
gatccttagaattcatagacagagagattgccaaaaagttgttcctctaa
ttagctctctgtttctgtctgtcaatctctctctctctctctctcttaca
cacacacacaaacacacacactctatataagaataaataaatactatttc
ttttccataaaggctaaattaagcctccagttattgggataaactttgaa
gttcatgccccaccatttcctgtaccaatcactggtgggccaagagagaa
tgaaattatttttaaatgatcaaaattgggtcaccacagtaccactccat
ctccagggtggtcatgcatg
gaattcatcacaagtgcttctgccatgtcccaattgtgggtcctcctgtg
cctctgggccctgtctctggcagatacccaagacagaagcgccgcttctc
tttcatttgtgactcttggagacaagcgagggccgtttccatatacagga
ggcagaagccatgaccacgtgtacttaagtgatatctggccaagaattaa
tagcacattcagtgttcatacaaatcctgcatttttctctacttccaccg
tctccctactgagctggtttactttggtaggctgtggagtgtccactgac
atacacggggcatgtggccattcatcaataagaatgagttgattttctcc
tgcttccttcacctccgttgctgtccttgaagatattgctgttggtgcca
gacattagggctgtcgtcatggcttttacaccacagaagaccccatgaac
atgcgtttctctttttcccgtgcttgcgagagtgttaggacaggatctga
ttctccactctgctcatttattccaggcactccggttaagtaactcggcc
atggggaagacaaccacaggccagatagttaacctgctgtccaacgacgt
gaacaaattcgaccaagtacgttccatctctgtcagttcctgccccaatt
ttccccctttttaatctgttggaatgtgagggtttttggtgtagactagg
atttttttctgaagttgtgacatagcacttttaaagccacatctcagttc
tgtgtgcagcatagtgtggtaagatgtgtttgaccccatagagcccagtt
tgcttttcctgatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_118861367_118862467
seq2: B6Ng01-213A18.b_48_1167

seq1  GAATTCCACAGAATTAAAGCAGGCTTCTAAAACTAACAATAGCTCTTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGAATTAAAGCAGGCTTCTAAAACTAACAATAGCTCTTTGG  50

seq1  GGGAACCGGTGGGAATTGTGAAACCTCTTGTTTTCCAGAAAAGACTCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCGGTGGGAATTGTGAAACCTCTTGTTTTCCAGAAAAGACTCAGT  100

seq1  AGGGGAAATTTGAAGCTTCCCTCTCCGGATGTGCACAGTGAGTACAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAATTTGAAGCTTCCCTCTCCGGATGTGCACAGTGAGTACAGCTG  150

seq1  TCAGCTGCCTCACCTGTCTGAGTGGCTACGGAGGTGAATCCCAGAGGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGCCTCACCTGTCTGAGTGGCTACGGAGGTGAATCCCAGAGGCAT  200

seq1  GAATGGAGGCTTGCCAAGAGATTCCGCACTGTAGCTCTGCCCTCAAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAGGCTTGCCAAGAGATTCCGCACTGTAGCTCTGCCCTCAAATGC  250

seq1  CCCTCAGGTAGAGGGTGGGGACTGGAAAACGTTTGCACGTGATAACTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGGTAGAGGGTGGGGACTGGAAAACGTTTGCACGTGATAACTTTC  300

seq1  CATTAACTCATTGTCTGGGGTGCAGTTCCCACAGTCAGTTGGGCTGTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACTCATTGTCTGGGGTGCAGTTCCCACAGTCAGTTGGGCTGTTTG  350

seq1  GGCCACTGTAGAATTGACTATCACCTGGTTGACTTAATTGTTTTATAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTGTAGAATTGACTATCACCTGGTTGACTTAATTGTTTTATAAAG  400

seq1  GCCAAAATCAAGGGAAATGTTCAGCATTCCAGAGCCCAATGAGTAATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAATCAAGGGAAATGTTCAGCATTCCAGAGCCCAATGAGTAATAAT  450

seq1  CCAGAGTCAACACTCGGCCAGGGAAAGTATCGTTGTTAGCACAATGATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTCAACACTCGGCCAGGGAAAGTATCGTTGTTAGCACAATGATGT  500

seq1  CTAGTTCTCCATTTTTTTCCTGATTTGAATTATCTGATGTTCTAGAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCTCCATTTTTTTCCTGATTTGAATTATCTGATGTTCTAGAACAT  550

seq1  CTCATCTCCAAGTACAATCTCTCCTGGATGCTGGGCCTGGGTGATACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTCCAAGTACAATCTCTCCTGGATGCTGGGCCTGGGTGATACAAT  600

seq1  CAGTTGCCATGTCTTGACAGGGAGTGTGGCTTTTATTATCATAAGCATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCCATGTCTTGACAGGGAGTGTGGCTTTTATTATCATAAGCATGG  650

seq1  TGTTCTTAGAGCCAGAAAGGACTTGGGACATTACTTCGCCACAACTATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTAGAGCCAGAAAGGACTTGGGACATTACTTCGCCACAACTATGA  700

seq1  AATCCTCTTCATGTCTTTTTCCTGAAAAGCCGAACCTTGGCCAAGGAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCTTCATGTCTTTTTCCTGAAAAGCCGAACCTTGGCCAAGGAAGA  750

seq1  TGCTACAGTGGGTATAAGTGGTTGTCACACAAACCTGACAACCTGAACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACAGTGGGTATAAGTGGTTGTCACACAAACCTGACAACCTGAACTA  800

seq1  GATCCTTAGAATTCATAGACAGAGAGATTGCC-AAAAGTTG-TCCTCTAA  848
      |||||||||||||||||||||||||||||||| |||||||| ||||||||
seq2  GATCCTTAGAATTCATAGACAGAGAGATTGCCAAAAAGTTGTTCCTCTAA  850

seq1  TTAGCTCTCTGTTTCTGTCTGTCAATCTCTCTCTCTCTCTCTCTCTTACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCTCTGTTTCTGTCTGTCAATCTCTCTCTCTCTCTCTCTCTTACA  900

seq1  CACACACACAAACACACACACTCTATATAAGAATAAATAAATACTA-TTC  947
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CACACACACAAACACACACACTCTATATAAGAATAAATAAATACTATTTC  950

seq1  TTTT-CATAAAGGCTAAATTAAGCCT-CAGTTATT-GGATAAACTTTGA-  993
      |||| ||||||||||||||||||||| |||||||| ||||||||||||| 
seq2  TTTTCCATAAAGGCTAAATTAAGCCTCCAGTTATTGGGATAAACTTTGAA  1000

seq1  -GTCATGCCC--ACATTT-CTGTACCAATCACT-GTGGG-CAAGAGAG-A  1036
        ||||||||   ||||| |||||||||||||| ||||| |||||||| |
seq2  GTTCATGCCCCACCATTTCCTGTACCAATCACTGGTGGGCCAAGAGAGAA  1050

seq1  TGAAAT--ATTTTAAATGATCAAAATT-GGTCA-CACAGTA-CACCCCAT  1081
      ||||||   |||||||||||||||||| ||||| ||||||| ||| ||||
seq2  TGAAATTATTTTTAAATGATCAAAATTGGGTCACCACAGTACCACTCCAT  1100

seq1  CTCCAGGGTTGTTATGCATG  1101
      ||||||||| || |||||||
seq2  CTCCAGGGTGGTCATGCATG  1120

seq1: chr14_119031123_119031935
seq2: B6Ng01-213A18.g_68_882 (reverse)

seq1  ACATCA-GAAAAGCAAAACTGGGCTCTATGGGGTC-AACACATCTTACCA  48
      |||||| ||||||| |||||||||||||||||||| ||||||||||||||
seq2  ACATCAGGAAAAGC-AAACTGGGCTCTATGGGGTCAAACACATCTTACCA  49

seq1  CACCTATGCTGCACACAGAACTGAGATGTGGCTTT-AAAGTGCCTATGTC  97
      || |||||||||||||||||||||||||||||||| |||||| |||||||
seq2  CA-CTATGCTGCACACAGAACTGAGATGTGGCTTTAAAAGTG-CTATGTC  97

seq1  ACAACTTCAG-AAAAAATCCTAGTCTACACC-AAAACCCTCACATTCCAA  145
      |||||||||| |||||||||||||||||||| ||||||||||||||||||
seq2  ACAACTTCAGAAAAAAATCCTAGTCTACACCAAAAACCCTCACATTCCAA  147

seq1  CAGATTAAAAAGGGGGAAAATTGGGGCAGGAACTGACAGAGATGGAACGT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTAAAAAGGGGGAAAATTGGGGCAGGAACTGACAGAGATGGAACGT  197

seq1  ACTTGGTCGAATTTGTTCACGTCGTTGGACAGCAGGTTAACTATCTGGCC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTCGAATTTGTTCACGTCGTTGGACAGCAGGTTAACTATCTGGCC  247

seq1  TGTGGTTGTCTTCCCCATGGCCGAGTTACTTAACCGGAGTGCCTGGAATA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTGTCTTCCCCATGGCCGAGTTACTTAACCGGAGTGCCTGGAATA  297

seq1  AATGAGCAGAGTGGAGAATCAGATCCTGTCCTAACACTCTCGCAAGCACG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCAGAGTGGAGAATCAGATCCTGTCCTAACACTCTCGCAAGCACG  347

seq1  GGAAAAAGAGAAACGCATGTTCATGGGGTCTTCTGTGGTGTAAAAGCCAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAGAGAAACGCATGTTCATGGGGTCTTCTGTGGTGTAAAAGCCAT  397

seq1  GACGACAGCCCTAATGTCTGGCACCAACAGCAATATCTTCAAGGACAGCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGACAGCCCTAATGTCTGGCACCAACAGCAATATCTTCAAGGACAGCA  447

seq1  ACGGAGGTGAAGGAAGCAGGAGAAAATCAACTCATTCTTATTGATGAATG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGGTGAAGGAAGCAGGAGAAAATCAACTCATTCTTATTGATGAATG  497

seq1  GCCACATGCCCCGTGTATGTCAGTGGACACTCCACAGCCTACCAAAGTAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACATGCCCCGTGTATGTCAGTGGACACTCCACAGCCTACCAAAGTAA  547

seq1  ACCAGCTCAGTAGGGAGACGGTGGAAGTAGAGAAAAATGCAGGATTTGTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTCAGTAGGGAGACGGTGGAAGTAGAGAAAAATGCAGGATTTGTA  597

seq1  TGAACACTGAATGTGCTATTAATTCTTGGCCAGATATCACTTAAGTACAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACTGAATGTGCTATTAATTCTTGGCCAGATATCACTTAAGTACAC  647

seq1  GTGGTCATGGCTTCTGCCTCCTGTATATGGAAACGGCCCTCGCTTGTCTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCATGGCTTCTGCCTCCTGTATATGGAAACGGCCCTCGCTTGTCTC  697

seq1  CAAGAGTCACAAATGAAAGAGAAGCGGCGCTTCTGTCTTGGGTATCTGCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTCACAAATGAAAGAGAAGCGGCGCTTCTGTCTTGGGTATCTGCC  747

seq1  AGAGACAGGGCCCAGAGGCACAGGAGGACCCACAATTGGGACATGGCAGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGGGCCCAGAGGCACAGGAGGACCCACAATTGGGACATGGCAGA  797

seq1  AGCACTTGTGATGAATTC  813
      ||||||||||||||||||
seq2  AGCACTTGTGATGAATTC  815