BAC Information

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BAC

Clone NameB6Ng01-213D02
Chromosome14 (Build37)
Map Location 52,589,274 - 52,755,643
singlet/doubletdoublet
Overlap geneE130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1
Upstream geneLOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13
Downstream geneSupt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213D02.bB6Ng01-213D02.g
ACCGA030796GA030797
length1,147444
definitionB6Ng01-213D02.b B6Ng01-213D02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,589,274 - 52,590,401)(52,755,196 - 52,755,643)
sequence
gaattctttgttcagctctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatgtattggatattagtcccc
tatctgatttaggataggtaaaaatcctttcccaatctgttggtggtctt
tttgtctacttctttaaaagcaatctatcaagatctttaatttagccagg
actatgtaagagaaaatcctaaaaaaaatttttttttatcctaagcattt
ttacattgtcattttgaaaacctactttgaggcttacacaggtatctttg
tgttttacagatcatcttagtgtgttacactgtaatgatatattttaaat
tatttattttttagctataaataaataaaataatagcatgctgggttgtg
atggcacatgctgttaatccagttaatcaggaggcagaagctctctgtga
gttcaaggccagcctggactacaaagcaaggtctaggacagccaagacta
ttacaaagagaaaccttaccttaaaaaaaccaaaatcatcatcatcgtcg
tcgtcgtcgtcgtcgtcgtcatcatcatcatcatcatggtcctcaccata
catgttaaactttaaccttttttggatgtttttaatcctactttggatgc
cccataaagacaaataaaaagtaaatgctttttctaaacaaagaccattt
caaggtacctgttatgttaacttaaatatttatcaagtatttaatttaaa
tttggttaaaaaaacaaactactagtatactctattgtgtttaatattag
atatctaagatacatatatttttgtgggctttagatagagccttctgagc
tttcatttttactttctttaagattgtttcttttaattttgtattgacca
ttaccaatgtttaagatttaaagtgtgttgtaaatgtttaaaatatggtt
tataacctagttaagttacttataaggattttacttttttgagaacagag
tttcctctgtgtagccttacctgttcctggaactttgcctctatagatca
gcttaccttcataacctcaagagattctctacttgaactctgtcttctag
tgcttggaattaaaggggtgtgttaccactgtctattgcttatcaaa
caggacaaccacagctgcactgagaaaccctgcctcaaaaagcttaaaat
acccgggcaggggtggcgcacgcctttaatcccagcacttgggaggcaga
ggcagggaaatttctgagttcgaggccagcctggtctacagaatgagttc
caagacagccaggactatatacagagaaaccctgtctcaaaaaaccaaaa
caaaataaaaacaaaaaaccctaaataataataataaaaatgaaaagctt
tctggccaggagtagtgacccatgcctttagtgacaacaccaggaagcag
aggcaggtagatttctgtgagtttttaggctaacctggtctgcattggaa
ggcccaatctaaaaaacaaacaaaactaacaaaaatacctgttgatgttg
gggtgggtagtaagctggcacagtaggtatgggtttcctgctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_52589274_52590401
seq2: B6Ng01-213D02.b_42_1188

seq1  GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTAATGGGGTTATTTGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTAATGGGGTTATTTGATTT  50

seq1  TCTGGAGTCCACCTTCTTGAGTTCTTTATATGTATTGGATATTAGTCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTCCACCTTCTTGAGTTCTTTATATGTATTGGATATTAGTCCCC  100

seq1  TATCTGATTTAGGATAGGTAAAAATCCTTTCCCAATCTGTTGGTGGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGATTTAGGATAGGTAAAAATCCTTTCCCAATCTGTTGGTGGTCTT  150

seq1  TTTGTCTACTTCTTTAAAAGCAATCTATCAAGATCTTTAATTTAGCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTACTTCTTTAAAAGCAATCTATCAAGATCTTTAATTTAGCCAGG  200

seq1  ACTATGTAAGAGAAAATCCTAAAAAAAATTTTTTTTTATCCTAAGCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTAAGAGAAAATCCTAAAAAAAATTTTTTTTTATCCTAAGCATTT  250

seq1  TTACATTGTCATTTTGAAAACCTACTTTGAGGCTTACACAGGTATCTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTGTCATTTTGAAAACCTACTTTGAGGCTTACACAGGTATCTTTG  300

seq1  TGTTTTACAGATCATCTTAGTGTGTTACACTGTAATGATATATTTTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTACAGATCATCTTAGTGTGTTACACTGTAATGATATATTTTAAAT  350

seq1  TATTTATTTTTTAGCTATAAATAAATAAAATAATAGCATGCTGGGTTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTTTTAGCTATAAATAAATAAAATAATAGCATGCTGGGTTGTG  400

seq1  ATGGCACATGCTGTTAATCCAGTTAATCAGGAGGCAGAAGCTCTCTGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACATGCTGTTAATCCAGTTAATCAGGAGGCAGAAGCTCTCTGTGA  450

seq1  GTTCAAGGCCAGCCTGGACTACAAAGCAAGGTCTAGGACAGCCAAGACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGGCCAGCCTGGACTACAAAGCAAGGTCTAGGACAGCCAAGACTA  500

seq1  TTACAAAGAGAAACCTTACCTTAAAAAAACCAAAATCATCATCATCGTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAGAGAAACCTTACCTTAAAAAAACCAAAATCATCATCATCGTCG  550

seq1  TCGTCGTCGTCGTCGTCGTCATCATCATCATCATCATGGTCCTCACCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCGTCGTCGTCGTCGTCATCATCATCATCATCATGGTCCTCACCATA  600

seq1  CATGTTAAACTTTAACCTTTTTTGGATGTTTTTAATCCTACTTTGGATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTAAACTTTAACCTTTTTTGGATGTTTTTAATCCTACTTTGGATGC  650

seq1  CCCATAAAGACAAATAAAAAGTAAATGCTTTTTCTAAACAAAGACCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAAAGACAAATAAAAAGTAAATGCTTTTTCTAAACAAAGACCATTT  700

seq1  CAAGGTACCTGTTATGTTAACTTAAATATTTATCAAGTATTTAATTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTACCTGTTATGTTAACTTAAATATTTATCAAGTATTTAATTTAAA  750

seq1  TTTGGTTAAAAAAACAAACTACTAGTATACTCTATTGTGTTTAATATTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTAAAAAAACAAACTACTAGTATACTCTATTGTGTTTAATATTAG  800

seq1  ATATCTAAGATACATATATTTTTGTGG--CTTAGATAGAGCCTTCTGAGC  848
      |||||||||||||||||||||||||||   ||||||||||||||||||||
seq2  ATATCTAAGATACATATATTTTTGTGGGCTTTAGATAGAGCCTTCTGAGC  850

seq1  TTTCATTTTTAC-TTCTTTAAGATTGTTTC-TTTAATTTTGTATTGA-CA  895
      |||||||||||| ||||||||||||||||| |||||||||||||||| ||
seq2  TTTCATTTTTACTTTCTTTAAGATTGTTTCTTTTAATTTTGTATTGACCA  900

seq1  ATAACAATG-TTAAGA-TTAAAGTGTGTTGTAAATGTTAAAAATATGG-T  942
       || ||||| |||||| ||||||||||||||||||||| ||||||||| |
seq2  TTACCAATGTTTAAGATTTAAAGTGTGTTGTAAATGTTTAAAATATGGTT  950

seq1  TATAACTAAGTTAAGTTAC-TATAAAGATTATACTTTTTTGAG-ACAGAG  990
      ||||||  ||||||||||| ||||| |||| |||||||||||| ||||||
seq2  TATAACCTAGTTAAGTTACTTATAAGGATTTTACTTTTTTGAGAACAGAG  1000

seq1  TTT-CTCTGTGTAGCCCTACCTGTT-CTGGAACTT--GCTCTATAGATCA  1036
      ||| |||||||||||| |||||||| |||||||||   ||||||||||||
seq2  TTTCCTCTGTGTAGCCTTACCTGTTCCTGGAACTTTGCCTCTATAGATCA  1050

seq1  GGCTAACCTC--AAACTCACAGAGA---TCTACCTG-ACTCTGCCTTCCA  1080
      |  || | ||  || |||| |||||   ||||| || |||||| ||| | 
seq2  GCTTACCTTCATAACCTCA-AGAGATTCTCTACTTGAACTCTGTCTT-CT  1098

seq1  AGTGC-TGGGATTAAAGGGGTGTGTTACCACTGCCTATTGGTTATAAAA  1128
      ||||| ||| ||||||||||||||||||||||| |||||| |||| |||
seq2  AGTGCTTGGAATTAAAGGGGTGTGTTACCACTGTCTATTGCTTATCAAA  1147

seq1: chr14_52755196_52755643
seq2: B6Ng01-213D02.g_70_519 (reverse)

seq1  GCAGCAGG-AACCCATACCTACTGTGCCAGCTTACTACCCACCCCAACAT  49
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGGAAACCCATACCTACTGTGCCAGCTTACTACCCACCCCAACAT  50

seq1  CAACAGGTATTTTTGTTAGTTTTGTTTGTTTTTTAGATTGGGCCTTCCTA  99
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAACAGGTATTTTTGTTAGTTTTGTTTGTTTTTTAGATTGGGCCTTCCAA  100

seq1  TGCAGACCAGGTTAGCCT-AAAACTCACAGAAATCTACCTGCCTCTGCTT  148
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGCAGACCAGGTTAGCCTAAAAACTCACAGAAATCTACCTGCCTCTGCTT  150

seq1  CCTGGTGTTGTCACTAAAGGCATGGGTCACTACTCCTGGCCAGAAAGCTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGTTGTCACTAAAGGCATGGGTCACTACTCCTGGCCAGAAAGCTT  200

seq1  TTCATTTTTATTATTATTATTTAGGGTTTTTTGTTTTTATTTTGTTTTGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTTATTATTATTATTTAGGGTTTTTTGTTTTTATTTTGTTTTGG  250

seq1  TTTTTTGAGACAGGGTTTCTCTGTATATAGTCCTGGCTGTCTTGGAACTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAGACAGGGTTTCTCTGTATATAGTCCTGGCTGTCTTGGAACTC  300

seq1  ATTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATTTCCCTGCCTCTGCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATTTCCCTGCCTCTGCC  350

seq1  TCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCCCTGCCCGGGTATTTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCCCTGCCCGGGTATTTTA  400

seq1  AGCTTTTTGAGGCAGGGTTTCTCAGTGCAGCTGTGGTTGTCCTGGAATTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTTGAGGCAGGGTTTCTCAGTGCAGCTGTGGTTGTCCTGGAATTC  450