BAC Information

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BAC

Clone NameB6Ng01-213L20
Chromosome14 (Build37)
Map Location 99,898,334 - 100,033,618
singlet/doubletdoublet
Overlap geneLOC668672
Upstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671
Downstream geneEG546623, Klf12, LOC100043413, EG668683, EG668684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213L20.bB6Ng01-213L20.g
ACCGA031178GA031179
length1,068837
definitionB6Ng01-213L20.b B6Ng01-213L20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,898,334 - 99,899,404)(100,032,358 - 100,033,618)
sequence
gaattcctgcttaattctttaggatgatcactctttcttgtgtggttcgt
atgagttgagtgcacacagttgagtgctcacagatgaaatcaggtctttg
taaagacccaaggcttccatcgactctctcttatcagctgctgtgaggtg
cgaccttgctgggttgtcttcaacaccagttacccaacggcacttcaatg
agagaatatggtagaatatactgtgccgtagaattttaaatcgataaggt
cacctatatggcaaatatacttatacatgtccattcatgtgtatgtaaca
ttcagatgtacatatatatatatatatatatatatatatatataggaaga
aaattaaagagctttcattcacaaatctatgtgaccagatgcaaaagcct
tccttgaacagggcaggttcctgagaagatacaggatgctcttcactgca
tgctgcaaatcctttgggaatttgtgtatgtatgtacatgtgagtatgct
accacaagattaattctttttttcttgctactcatggtaccaacctcaca
aatctgtgattcacaacaggaatgtagcccggaacttctgctatgtaagc
agctgcagctgcttcaaataccaccgtacatgtgatccaggactcgctat
aaatttacccctaaaaataaagtaacaagtgaccgaacagcaataagaat
taatcactgcagcgcatgaatggaatgtgccaggctctacctcaaaaatc
cctttataaaaagattgttataattaaaaactccaaagaaatacccgagg
atgctgtgttagagtaaatgtgctgcaaattctgagagaagaattttatt
ttttttaaaggagagatatgatagaatgggaaagagcctctgtgacttct
atatcattggaaagagggtggggattattgcatcactgaaggaatgcatc
cttacaaagggaatttcaattgggctcaggcttggtactctggggaggtt
ttttttttttttttttcttcttttttttttaagccgggaggatagacaag
ccttctggttatctgttg

gaattcttatcttgtccctcctccaaaaacagaagggacaaacagtagac
tgtgaacaagtaagaggggacctttgtttgtcacataagagtgtacattt
ggatgggaaataagtcgctatgtaagaaggacaattctaatagcacagtt
ttgatctctgggtactaaccaggaacttgctgatgagtaccaccattctg
agacaaatcactgctacggcagtggtctcctccagagcaagggtgcagag
agcagctcacagtctagggtagctgttgggtctggcaggtctcaaaggtt
cgaagtaggagtagaggatccccaagttggacagtgaaagactgccagag
tcccactgtggagggtctctagtggtggtcctgtctctggcaggtctcag
tcgtacttttcttttctccaataacatctgggagacaaatctctgtccaa
agcctggagcagacctcaggtttagaagctggcttctagtggcaaaaccg
cttgtgtggcacattcctctgtggagcctgataggccctgattggctgag
catttgtgtacaaatgaggcataaaatgggacccaccagaagagagtgtt
cagacccagaaaggaagagagagcacccacaaaaacctggacttgttctc
aatttcggactaagttctactctatccctcttccccataaagcagcctgt
tgtgcgtgagttaagggctactgggacctttgttccctgctaatccaacg
ttttcagtgaaagggaacctgggatctccacctgccactctctaattgtt
ccgggtccgggtcaggggtacggggtggggggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_99898334_99899404
seq2: B6Ng01-213L20.b_45_1112

seq1  GAATTCCTGCTTAATTCTTTAGGATGATCACTCTTTCTTGTGTGGTTCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCTTAATTCTTTAGGATGATCACTCTTTCTTGTGTGGTTCGT  50

seq1  ATGAGTTGAGTGCACACAGTTGAGTGCTCACAGATGAAATCAGGTCTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTGAGTGCACACAGTTGAGTGCTCACAGATGAAATCAGGTCTTTG  100

seq1  TAAAGACCCAAGGCTTCCATCGACTCTCTCTTATCAGCTGCTGTGAGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACCCAAGGCTTCCATCGACTCTCTCTTATCAGCTGCTGTGAGGTG  150

seq1  CGACCTTGCTGGGTTGTCTTCAACACCAGTTACCCAACGGCACTTCAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCTTGCTGGGTTGTCTTCAACACCAGTTACCCAACGGCACTTCAATG  200

seq1  AGAGAATATGGTAGAATATACTGTGCCGTAGAATTTTAAATCGATAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATATGGTAGAATATACTGTGCCGTAGAATTTTAAATCGATAAGGT  250

seq1  CACCTATATGGCAAATATACTTATACATGTCCATTCATGTGTATGTAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATATGGCAAATATACTTATACATGTCCATTCATGTGTATGTAACA  300

seq1  TTCAGATGTACATATATATATATATATATATATATATATATATAGGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATGTACATATATATATATATATATATATATATATATATAGGAAGA  350

seq1  AAATTAAAGAGCTTTCATTCACAAATCTATGTGACCAGATGCAAAAGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAGAGCTTTCATTCACAAATCTATGTGACCAGATGCAAAAGCCT  400

seq1  TCCTTGAACAGGGCAGGTTCCTGAGAAGATACAGGATGCTCTTCACTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAACAGGGCAGGTTCCTGAGAAGATACAGGATGCTCTTCACTGCA  450

seq1  TGCTGCAAATCCTTTGGGAATTTGTGTATGTATGTACATGTGAGTATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAAATCCTTTGGGAATTTGTGTATGTATGTACATGTGAGTATGCT  500

seq1  ACCACAAGATTAATTCTTTTTTTCTTGCTACTCATGGTACCAACCTCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAGATTAATTCTTTTTTTCTTGCTACTCATGGTACCAACCTCACA  550

seq1  AATCTGTGATTCACAACAGGAATGTAGCCCGGAACTTCTGCTATGTAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTGATTCACAACAGGAATGTAGCCCGGAACTTCTGCTATGTAAGC  600

seq1  AGCTGCAGCTGCTTCAAATACCACCGTACATGTGATCCAGGACTCGCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAGCTGCTTCAAATACCACCGTACATGTGATCCAGGACTCGCTAT  650

seq1  AAATTTACCCCTAAAAATAAAGTAACAAGTGACCGAACAGCAATAAGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTACCCCTAAAAATAAAGTAACAAGTGACCGAACAGCAATAAGAAT  700

seq1  TAATCACTGCAGCGCATGAATGGAATGTGCCAGGCTCTACCTCAAAAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACTGCAGCGCATGAATGGAATGTGCCAGGCTCTACCTCAAAAATC  750

seq1  CCTTTATAAAAAGATTGTTATAATTAAAAACTCCAAAGAAATACCCGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATAAAAAGATTGTTATAATTAAAAACTCCAAAGAAATACCCGAGG  800

seq1  ATGCTGTGTTAGAGTAAATGTGCTGCAAATTCTGAGAGAAGAATTTTA-T  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATGCTGTGTTAGAGTAAATGTGCTGCAAATTCTGAGAGAAGAATTTTATT  850

seq1  TTTTTTAAAGGAGAGATATGATAGAATGGGAAAGAGCCTCTGTGACTTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAGGAGAGATATGATAGAATGGGAAAGAGCCTCTGTGACTTCT  900

seq1  ATATCATTGGAAAGAGGGT-GGGATTATTGCATCACTG-AGGAATGCATC  947
      ||||||||||||||||||| |||||||||||||||||| |||||||||||
seq2  ATATCATTGGAAAGAGGGTGGGGATTATTGCATCACTGAAGGAATGCATC  950

seq1  C-TACAAA-GGAATTTCAATTGGGCTCAGGCTTGGTACTCT-GGGAGGTT  994
      | |||||| |||||||||||||||||||||||||||||||| ||||||  
seq2  CTTACAAAGGGAATTTCAATTGGGCTCAGGCTTGGTACTCTGGGGAGG--  998

seq1  TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGTCTGTGAGGA  1044
           |||||||||||||||||| || ||||||||||||| | | |||||
seq2  -----TTTTTTTTTTTTTTTTTTCTTCTTTTTTTTTTAAG-CCGGGAGGA  1042

seq1  TAGACAAGCCTTCTGGTTAAGCTGTTG  1071
      |||||||||||||||||| | ||||||
seq2  TAGACAAGCCTTCTGGTT-ATCTGTTG  1068


seq1: chr14_100032358_100033618
seq2: B6Ng01-213L20.g_70_906 (reverse)

seq1  CCCCACAGTCACAAACAACATGTCTTTACATGTCTTTACATTACAGGAAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  GACTGACATGGCCTCTCTGATATCACATTATGAATGAAGAAAGAATAGGC  100
                                                        
seq2  --------------------------------------------------  0

seq1  AAAGGATAAGGATTATGGGATAGCAAGATACACTCAAAAAATATTGGCAG  150
                                                        
seq2  --------------------------------------------------  0

seq1  TGGCTGTCTCTGTAGTTAAGGGTGATCAAGATTTCCTTTGAACCATTCTG  200
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTCTAAATTCTTAAAATAAATAAATAAATAAATAAATAAATAAATAAA  250
                                                        
seq2  --------------------------------------------------  0

seq1  TAAATAAATGATAGAGTTAGTAGTCTGTCCATGGGCTATTGTTCTCCTCT  300
                                                        
seq2  --------------------------------------------------  0

seq1  TCCCCCTTTGCCAGTGCTACTTTCCAAAATTAGGTGGTGGTGGAAGGTTC  350
                                                        
seq2  --------------------------------------------------  0

seq1  CAGAGTTGGAGGTGATTGGTGGAATAGATGTGACAATGCTTTAGATGCCA  400
                                                        
seq2  --------------------------------------------------  0

seq1  ACAGCAGGCTGTGTTTGAAGTCCCACCCCCACCCCCACCCCGTACCCCTG  450
                               ||||  |||||||||||||||||||
seq2  -------------------------CCCCACCCCCCACCCCGTACCCCTG  25

seq1  ACCCGGACCCGGAACAATTAGAGAGTGGCAGGTGGAGATCCCAGGTTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGGACCCGGAACAATTAGAGAGTGGCAGGTGGAGATCCCAGGTTCCC  75

seq1  TTTCACTG-AAACGTTGGATTAGCAGGGAACAAAGGTCCCAGTAGCCCTT  549
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTGAAAACGTTGGATTAGCAGGGAACAAAGGTCCCAGTAGCCCTT  125

seq1  AACTCACGCACAACAGGCTGCTTTATGGGGAAGAGGGATAGAGTAGAACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACGCACAACAGGCTGCTTTATGGGGAAGAGGGATAGAGTAGAACT  175

seq1  TAGTCCGAAATTGAGAACAAGTCCAGGTTTTTGTGGGTGCTCTCTCTTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCGAAATTGAGAACAAGTCCAGGTTTTTGTGGGTGCTCTCTCTTCC  225

seq1  TTTCTGGGTCTGAACACTCTCTTCTGGTGGGTCCCATTTTATGCCTCATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGGTCTGAACACTCTCTTCTGGTGGGTCCCATTTTATGCCTCATT  275

seq1  TGTACACAAATGCTCAGCCAATCAGGGCCTATCAGGCTCCACAGAGGAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACAAATGCTCAGCCAATCAGGGCCTATCAGGCTCCACAGAGGAAT  325

seq1  GTGCCACACAAGCGGTTTTGCCACTAGAAGCCAGCTTCTAAACCTGAGGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACACAAGCGGTTTTGCCACTAGAAGCCAGCTTCTAAACCTGAGGT  375

seq1  CTGCTCCAGGCTTTGGACAGAGATTTGTCTCCCAGATGTTATTGGAGAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCAGGCTTTGGACAGAGATTTGTCTCCCAGATGTTATTGGAGAAA  425

seq1  AGAAAAGTACGACTGAGACCTGCCAGAGACAGGACCACCACTAGAGACCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTACGACTGAGACCTGCCAGAGACAGGACCACCACTAGAGACCC  475

seq1  TCCACAGTGGGACTCTGGCAGTCTTTCACTGTCCAACTTGGGGATCCTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGTGGGACTCTGGCAGTCTTTCACTGTCCAACTTGGGGATCCTCT  525

seq1  ACTCCTACTTCGAACCTTTGAGACCTGCCAGACCCAACAGCTACCCTAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTACTTCGAACCTTTGAGACCTGCCAGACCCAACAGCTACCCTAGA  575

seq1  CTGTGAGCTGCTCTCTGCACCCTTGCTCTGGAGGAGACCACTGCCGTAGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGCTGCTCTCTGCACCCTTGCTCTGGAGGAGACCACTGCCGTAGC  625

seq1  AGTGATTTGTCTCAGAATGGTGGTACTCATCAGCAAGTTCCTGGTTAGTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTTGTCTCAGAATGGTGGTACTCATCAGCAAGTTCCTGGTTAGTA  675

seq1  CCCAGAGATCAAAACTGTGCTATTAGAATTGTCCTTCTTACATAGCGACT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGATCAAAACTGTGCTATTAGAATTGTCCTTCTTACATAGCGACT  725

seq1  TATTTCCCATCCAAATGTACACTCTTATGTGACAAACAAAGGTCCCCTCT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCCATCCAAATGTACACTCTTATGTGACAAACAAAGGTCCCCTCT  775

seq1  TACTTGTTCACAGTCTACTGTTTGTCCCTTCTGTTTTTGGAGGAGGGACA  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTTCACAGTCTACTGTTTGTCCCTTCTGTTTTTGGAGGAGGGACA  825

seq1  AGATAAGAATTC  1261
      ||||||||||||
seq2  AGATAAGAATTC  837


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