BAC Information

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BAC

Clone NameB6Ng01-213N06
Chromosome14 (Build37)
Map Location 120,699,207 - 120,852,255
singlet/doubletdoublet
Overlap geneMbnl2
Upstream geneHs6st3, EG621324, LOC100043830, Oxgr1, Gabarapl2-ps, LOC100043831
Downstream geneRap2a, LOC668835, LOC668837, Ranbp5, Farp1, LOC100043837, Stk24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213N06.bB6Ng01-213N06.g
ACCGA031245GA031246
length5681,025
definitionB6Ng01-213N06.b B6Ng01-213N06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,699,207 - 120,699,780)(120,851,207 - 120,852,255)
sequence
tttgcgactgtgtcacagtccatctgttgaatgcctattgcctgtctgtg
gaatttaagcagataggcatgctagaggcttccttattcgctgggtaaaa
ctctctgtaaacattagcagataatatccatggtaataattatatgaaaa
aaaaatctatgtaactgtgtgaagagagccccaggatacccagtgtgctt
ctctgaaacgaccgtgcttgttcctttctgtttaagacttcatagaggga
taagcatctagattcatgttgtcttcacagtactagagtcctgaaagatg
tctgtcctctgaaagttgtctgtcccctgaaaaatgtctgttccctttca
agggtatgctacttccagtttgaagattctgcatggtcatttgaccctgc
tgtgctgtcaagccaggggtggaggacgctgtaggcctaaaaggtcatag
ttaggacggtagtagtgttgctattaaagcaacttaggagggtagatgct
ttggttaattcatttattaaacagctttaagaaagaagacagacagacag
atgacaggagggagggag
gaattcctgccctgctgtatagctgtatcgtccctacaagccaccacagg
gctgttacgggatttgctggatccgcccaccttttttactcagaaaggta
gaacttttgtttttttctttttgtctcttgtatctttctttaatattcta
atatcctctcctaatgttttgcacttcctttctttttctctgaagccctc
ttcttcccaagttgttacctaactcaaaaaggaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaggatttctccccatgagatttacagctttcttcctctg
aggtatataacttttaaactctattaaaattgctctcaagtctctgagtc
ttttcttaaattccttattaatgagactaagaagtgtaagaagtgtgtgc
atgtgcgtgtgcgcgcctgtgtgtgcgcgtgcacttgggcaaacacctga
tttcctttgtatgtatggcacctaggaaggagttcccctaagtctccagt
aatgtggttggtagtaagcctttaccaggtgagccatcacccacaccagg
gttcattgctttgacttaatagatcagcctacttttggagattaggaagt
aggatttccttttgttctgtgacccacacccttgtggatttagttcttct
ttcaggactgtgtcatttatgcgtttcctcttcaaactctgaaaaggaaa
ttcaagatttaattctttttctacctaaggcttggcttagtgacaaaacc
ctagttattctattaaagataaatgtaaagtgaagaggagtccgggagag
gaaagccctttgtagttttctttacacgcagcttcctttagacaaatgtt
gttcgcacactcttgatatagaaggacattggtgcttcattatagctcat
aaagacaatgcacggaggcaagctgtagtaccaattgtagactggaggtt
ttaattatacaactagccattatattactttgattcccatcaactgtggt
ttaataattgagatcctccttttag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_120699207_120699780
seq2: B6Ng01-213N06.b_49_622

seq1  GAATTCTTTGCGACTGTGTCACAGTCCATCTGTTGAATGCCTATTGCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCGACTGTGTCACAGTCCATCTGTTGAATGCCTATTGCCTG  50

seq1  TCTGTGGAATTTAAGCAGATAGGCATGCTAGAGGCTTCCTTATTCGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGAATTTAAGCAGATAGGCATGCTAGAGGCTTCCTTATTCGCTGG  100

seq1  GTAAAACTCTCTGTAAACATTAGCAGATAATATCCATGGTAATAATTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACTCTCTGTAAACATTAGCAGATAATATCCATGGTAATAATTATA  150

seq1  TGAAAAAAAAATCTATGTAACTGTGTGAAGAGAGCCCCAGGATACCCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAAAATCTATGTAACTGTGTGAAGAGAGCCCCAGGATACCCAGT  200

seq1  GTGCTTCTCTGAAACGACCGTGCTTGTTCCTTTCTGTTTAAGACTTCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCTCTGAAACGACCGTGCTTGTTCCTTTCTGTTTAAGACTTCATA  250

seq1  GAGGGATAAGCATCTAGATTCATGTTGTCTTCACAGTACTAGAGTCCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATAAGCATCTAGATTCATGTTGTCTTCACAGTACTAGAGTCCTGA  300

seq1  AAGATGTCTGTCCTCTGAAAGTTGTCTGTCCCCTGAAAAATGTCTGTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTCTGTCCTCTGAAAGTTGTCTGTCCCCTGAAAAATGTCTGTTCC  350

seq1  CTTTCAAGGGTATGCTACTTCCAGTTTGAAGATTCTGCATGGTCATTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAGGGTATGCTACTTCCAGTTTGAAGATTCTGCATGGTCATTTGA  400

seq1  CCCTGCTGTGCTGTCAAGCCAGGGGTGGAGGACGCTGTAGGCCTAAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTGTGCTGTCAAGCCAGGGGTGGAGGACGCTGTAGGCCTAAAAGG  450

seq1  TCATAGTTAGGACGGTAGTAGTGTTGCTATTAAAGCAACTTAGGAGGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTTAGGACGGTAGTAGTGTTGCTATTAAAGCAACTTAGGAGGGTA  500

seq1  GATGCTTTGGTTAATTCATTTATTAAACAGCTTTAAGAAAGAAGACAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTTGGTTAATTCATTTATTAAACAGCTTTAAGAAAGAAGACAGAC  550

seq1  AGACAGATGACAGGAGGGAGGGAG  574
      ||||||||||||||||||||||||
seq2  AGACAGATGACAGGAGGGAGGGAG  574

seq1: chr14_120851207_120852255
seq2: B6Ng01-213N06.g_68_1092 (reverse)

seq1  CTAAAAGGAGATTTTAACAATACATGCAGTTGAGTCTAAAAGGA-GATCT  49
                                         ||||||||| |||||
seq2  -----------------------------------CTAAAAGGAGGATCT  15

seq1  CAATAAT--AAACACAGTTGATTGGGATCAAAAAGTATTATAATTGCT-G  96
      |||| ||  || |||||||||| || |||  |||||| |||||| ||| |
seq2  CAATTATTAAACCACAGTTGATGGGAATC--AAAGTAATATAATGGCTAG  63

seq1  TTTTATAATTAAAACCTCCTGTCTTACATTGGTACCTACAGCTTTGCCTC  146
      || |||||||||||||||| ||||   ||||||| ||||||| |||||||
seq2  TTGTATAATTAAAACCTCCAGTCTACAATTGGTA-CTACAGC-TTGCCTC  111

seq1  TGTGCA-TGTC-TTATGAGCTATAATGAAGCA-CAATGT-CTTCTATATC  192
       ||||| |||| |||||||||||||||||||| |||||| ||||||||||
seq2  CGTGCATTGTCTTTATGAGCTATAATGAAGCACCAATGTCCTTCTATATC  161

seq1  A--AGGGTGCGAACAACATTTGTCT-AAGGAAGCTGCGTGTAAAG-AAAC  238
      |  || ||||||||||||||||||| ||||||||||||||||||| ||||
seq2  AAGAGTGTGCGAACAACATTTGTCTAAAGGAAGCTGCGTGTAAAGAAAAC  211

seq1  TACAAAGGGCTTTCCTCTCCCGGACTCCTCTTCACTTTACATTTATCTTT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGGGCTTTCCTCTCCCGGACTCCTCTTCACTTTACATTTATCTTT  261

seq1  AATAGAATAACTA-GGTTTTGTCACTAAGCCAAGCCTTAGGTAGAAAAAG  337
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AATAGAATAACTAGGGTTTTGTCACTAAGCCAAGCCTTAGGTAGAAAAAG  311

seq1  AATTAAATCTTGAATTTCCTTTTCAGAG-TTGAAGAGGAAACGCATAAAT  386
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AATTAAATCTTGAATTTCCTTTTCAGAGTTTGAAGAGGAAACGCATAAAT  361

seq1  GACACAGTCCTGAAAGAAGAACTAAATCCACAAGGGTGTGGGTCACAGAA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGTCCTGAAAGAAGAACTAAATCCACAAGGGTGTGGGTCACAGAA  411

seq1  CAAAAGGAAATCCTACTTCCTAATCTCCAAAAGTAGGCTGATCTATTAAG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGAAATCCTACTTCCTAATCTCCAAAAGTAGGCTGATCTATTAAG  461

seq1  TCAAAGCAATGAACCCTGGTGTGGGTGATGGCTCACCTGGTAAAGGCTTA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCAATGAACCCTGGTGTGGGTGATGGCTCACCTGGTAAAGGCTTA  511

seq1  CTACCAACCACATTACTGGAGACTTAGGGGAACTCCTTCCTAGGTGCCAT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAACCACATTACTGGAGACTTAGGGGAACTCCTTCCTAGGTGCCAT  561

seq1  ACATACAAAGGAAATCAGGTGTTTGCCCAAGTGCACGCGCACACACAGGC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACAAAGGAAATCAGGTGTTTGCCCAAGTGCACGCGCACACACAGGC  611

seq1  GCGCACACGCACATGCACACACTTCTTACACTTCTTAGTCTCATTAATAA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCACACGCACATGCACACACTTCTTACACTTCTTAGTCTCATTAATAA  661

seq1  GGAATTTAAGAAAAGACTCAGAGACTTGAGAGCAATTTTAATAGAGTTTA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTAAGAAAAGACTCAGAGACTTGAGAGCAATTTTAATAGAGTTTA  711

seq1  AAAGTTATATACCTCAGAGGAAGAAAGCTGTAAATCTCATGGGGAGAAAT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTATATACCTCAGAGGAAGAAAGCTGTAAATCTCATGGGGAGAAAT  761

seq1  CC-TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTTTTGAGTTAGGTAA  835
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTTTTGAGTTAGGTAA  811

seq1  CAACTTGGGAAGAAGAGGGCTTCAGAGAAAAAGAAAGGAAGTGCAAAACA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGGGAAGAAGAGGGCTTCAGAGAAAAAGAAAGGAAGTGCAAAACA  861

seq1  TTAGGAGAGGATATTAGAATATTAAAGAAAGATACAAGAGACAAAAAGAA  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGAGGATATTAGAATATTAAAGAAAGATACAAGAGACAAAAAGAA  911

seq1  AAAAACAAAAGTTCTACCTTTCTGAGTAAAAAAGGTGGGCGGATCCAGCA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAAGTTCTACCTTTCTGAGTAAAAAAGGTGGGCGGATCCAGCA  961

seq1  AATCCCGTAACAGCCCTGTGGTGGCTTGTAGGGACGATACAGCTATACAG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCGTAACAGCCCTGTGGTGGCTTGTAGGGACGATACAGCTATACAG  1011

seq1  CAGGGCAGGAATTC  1049
      ||||||||||||||
seq2  CAGGGCAGGAATTC  1025