BAC Information

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BAC

Clone NameB6Ng01-215E19
Chromosome14 (Build37)
Map Location 118,608,237 - 118,694,865
singlet/doubletdoublet
Overlap geneLOC100043539, Sox21, LOC100043825, EG668814
Upstream geneGpc6, 5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824
Downstream geneLOC435422, Abcc4, Cldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2, Hs6st3, LOC619601
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215E19.bB6Ng01-215E19.g
ACCGA032308GA032309
length1,125159
definitionB6Ng01-215E19.b B6Ng01-215E19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,693,732 - 118,694,865)(118,608,237 - 118,608,395)
sequence
gaattcatttgatgtatgaatttcggctttcatgaaacctcacctgacac
tattaattgcactcagaataaaaagcgcactcaccctgcctcctgacctg
gctcctgtccgaatccctcaaatccctgtagcaacctgcttgcttctttc
acttaactgggtgaaagggcatcttcacacgtacaggtatccaactgtga
tcattacaaggtacctatacggcattttcacatatacaggtattcaactg
tcatcattacgtggtacttgtacgacatagaggagaaaactgagactcac
atctatcaaggggaacctcagccaagatcaaaagacagttgatagagaat
ttggactggaattggagccaaacgtcagtcatcgtttctctggtcccttc
actggccctctagaaagtaggcgtctttgaaggataaactatgatgactc
tcctccctgtaagttttagcagtgaaggatagactgataaataaaacaga
agagatcactcagaacccccctactctacattacttaaaaaacaaaacca
aaaactttctatcagcgttgccttcagtgaatagctgtacttgttccaga
gatagaacatccagttagtttctagatccactaaccagaagatcagtctt
gctaaaaactgaagagaagatagaggttgaagaagggagcaggggcgtga
acgatcccagatattatgatgcagagaacatcataataaaatccattact
ctgtatgcttacttatcaccttaagacgtggtggcctatgtatgccctgt
aatcacagcactgaggaactgcaggtaggatcaggacttgaggctcattc
ttgactacatagcaagttcaagacaagccagggctaaatgaagtgttgtc
tcaaaagaaattaaattcaaatatattttaagttcaggatgttttcttgc
tttttgatttgttccttgagtccccgcctccccaggcttctctatccctt
tgttgaacaaacctgaaaccctgggtcgttttactgctgtcatcacctcc
taggctttatcttgcccttcgttacgtacaacatacattcatgattccac
ccatgctacacaatgctgcccgtgc
cttgctatagcatgtccagggaagtccagaaccattgatttaagtggttt
tgggaaaaaaaatcagaacttgagttgtctacccaggtctaatgtaagaa
atgcatcataaatatgagggaccaggagaggaaaaggtaggagagggggg
aggtgggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_118693732_118694865
seq2: B6Ng01-215E19.b_43_1167 (reverse)

seq1  GCACGGGGCAGCATTTGTGTAAGCAATGGGGTGGATCAAATG-ATGTATG  49
      |||| |||||||| |||||| ||| |||||  | |||  ||| |||||||
seq2  GCAC-GGGCAGCA-TTGTGT-AGC-ATGGGTGGAATC--ATGAATGTATG  44

seq1  -TGTACGTAACGAAAGGGGCAGATTAAAGCCTAGGA-GTGATGACCAGCA  97
       |||||||||||||  |||||   |||||||||||| ||||||| |||||
seq2  TTGTACGTAACGAA--GGGCAAGATAAAGCCTAGGAGGTGATGA-CAGCA  91

seq1  AGGTAAAAACGA-CCAGGGTTTCAGGTTTGTTCAACAAAGGGATAGAGAA  146
        || ||||||| |||||||||||||||||||||||||||||||||||||
seq2  --GT-AAAACGACCCAGGGTTTCAGGTTTGTTCAACAAAGGGATAGAGAA  138

seq1  GCCTGGGGAGGCGGGGACTCAAGGAACAAATCAAAAAGCAAGAAAACATC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGGAGGCGGGGACTCAAGGAACAAATCAAAAAGCAAGAAAACATC  188

seq1  CTGAACTTAAAATATATTTTGAATTTAATTTCTTTTGAGACAACACTTCA  246
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTGAACTTAAAATATA-TTTGAATTTAATTTCTTTTGAGACAACACTTCA  237

seq1  TTTAGCCCTGGCTTGTCTTGAACTTGCTATGTAGTCAAGAATGAGCCTCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCCTGGCTTGTCTTGAACTTGCTATGTAGTCAAGAATGAGCCTCA  287

seq1  AGTCCTGATCCTACCTGCAGTTCCTCAGTGCTGTGATTACAGGGCATACA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGATCCTACCTGCAGTTCCTCAGTGCTGTGATTACAGGGCATACA  337

seq1  TAGGCCACCACGTCTTAAGGTGATAAGTAAGCATACAGAGTAATGGATTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCACCACGTCTTAAGGTGATAAGTAAGCATACAGAGTAATGGATTT  387

seq1  TATTATGATGTTCTCTGCATCATAATATCTGGGATCGTTCACGCCCCTGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGATGTTCTCTGCATCATAATATCTGGGATCGTTCACGCCCCTGC  437

seq1  TCCCTTCTTCAACCTCTATCTTCTCTTCAGTTTTTAGCAAGACTGATCTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTTCAACCTCTATCTTCTCTTCAGTTTTTAGCAAGACTGATCTT  487

seq1  CTGGTTAGTGGATCTAGAAACTAACTGGATGTTCTATCTCTGGAACAAGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTAGTGGATCTAGAAACTAACTGGATGTTCTATCTCTGGAACAAGT  537

seq1  ACAGCTATTCACTGAAGGCAACGCTGATAGAAAGTTTTTGGTTTTGTTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTATTCACTGAAGGCAACGCTGATAGAAAGTTTTTGGTTTTGTTTT  587

seq1  TTAAGTAATGTAGAGTAGGGGGGTTCTGAGTGATCTCTTCTGTTTTATTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTAATGTAGAGTAGGGGGGTTCTGAGTGATCTCTTCTGTTTTATTT  637

seq1  ATCAGTCTATCCTTCACTGCTAAAACTTACAGGGAGGAGAGTCATCATAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCTATCCTTCACTGCTAAAACTTACAGGGAGGAGAGTCATCATAG  687

seq1  TTTATCCTTCAAAGACGCCTACTTTCTAGAGGGCCAGTGAAGGGACCAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCTTCAAAGACGCCTACTTTCTAGAGGGCCAGTGAAGGGACCAGA  737

seq1  GAAACGATGACTGACGTTTGGCTCCAATTCCAGTCCAAATTCTCTATCAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACGATGACTGACGTTTGGCTCCAATTCCAGTCCAAATTCTCTATCAA  787

seq1  CTGTCTTTTGATCTTGGCTGAGGTTCCCCTTGATAGATGTGAGTCTCAGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTTGATCTTGGCTGAGGTTCCCCTTGATAGATGTGAGTCTCAGT  837

seq1  TTTCTCCTCTATGTCGTACAAGTACCACGTAATGATGACAGTTGAATACC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTCTATGTCGTACAAGTACCACGTAATGATGACAGTTGAATACC  887

seq1  TGTATATGTGAAAATGCCGTATAGGTACCTTGTAATGATCACAGTTGGAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGTGAAAATGCCGTATAGGTACCTTGTAATGATCACAGTTGGAT  937

seq1  ACCTGTACGTGTGAAGATGCCCTTTCACCCAGTTAAGTGAAAGAAGCAAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTACGTGTGAAGATGCCCTTTCACCCAGTTAAGTGAAAGAAGCAAG  987

seq1  CAGGTTGCTACAGGGATTTGAGGGATTCGGACAGGAGCCAGGTCAGGAGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGCTACAGGGATTTGAGGGATTCGGACAGGAGCCAGGTCAGGAGG  1037

seq1  CAGGGTGAGTGCGCTTTTTATTCTGAGTGCAATTAATAGTGTCAGGTGAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGAGTGCGCTTTTTATTCTGAGTGCAATTAATAGTGTCAGGTGAG  1087

seq1  GTTTCATGAAAGCCGAAATTCATACATCAAATGAATTC  1134
      ||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATGAAAGCCGAAATTCATACATCAAATGAATTC  1125

seq1: chr14_118608237_118608395
seq2: B6Ng01-215E19.g_71_229

seq1  CTTGCTATAGCATGTCCAGGGAAGTCCAGAACCATTGATTTAAGTGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTATAGCATGTCCAGGGAAGTCCAGAACCATTGATTTAAGTGGTTT  50

seq1  TGGGAAAAAAAATCAGAACTTGAGTTGTCTACCCAGGTCTAATGTAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAAAAAATCAGAACTTGAGTTGTCTACCCAGGTCTAATGTAAGAA  100

seq1  ATGCATCATAAATATGAGGGACCAGGAGAGGAAAAGGTAGGAGAGGGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCATAAATATGAGGGACCAGGAGAGGAAAAGGTAGGAGAGGGGGG  150

seq1  AGGTGGGGA  159
      |||||||||
seq2  AGGTGGGGA  159