BAC Information

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BAC

Clone NameB6Ng01-215K20
Chromosome14 (Build37)
Map Location 28,837,583 - 28,966,333
singlet/doubletdoublet
Overlap geneErc2
Upstream geneIl17rd, LOC665333, Arhgef3, LOC100040147, Ccdc66, LOC665370
Downstream geneLOC100040206, Wnt5a, LOC100040218, Cacna2d3, Lrtm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215K20.bB6Ng01-215K20.g
ACCGA032571GA032572
length1,1771,068
definitionB6Ng01-215K20.b B6Ng01-215K20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,965,128 - 28,966,333)(28,837,583 - 28,838,655)
sequence
gaattctcttcttaaaatgctcccttcaccttctatcagctctgcccctt
catctgcttttccacttgacacagctcaatgctatgtctgtatgacattc
ttacagccccacctgctcctcctttactacatgttgacccatgctataag
ctaggttggtctttgattagacaattgttgaccagacatttacaccacac
ctctaggatgctcttttgtattccacctcaagagcttctccctttcagac
aatcaacttagagaggaagacagaacaaaggaggcttccctgggacagtg
tagagtagctgctgcttccactgttgatgacagaggacggctctcagatc
ctcagctaaatatttttctaaggtaggagccgcaggaatcattcatgcca
aagggtaatctgaaagctattcattttaagaaatagcagttttgttttaa
agttgtgattttagagttaaacaatgtttctcttccccgatttatttaat
atgtgaatgtaagtctttttaaatgacactttcttaaactattggagcaa
attccatgtacttgaccatgacaccgtaacttttcccactgtgtccctct
ggcttctggaggaaacagaactcagcacacatttgcaatgagcagacatc
agtgaaggagaggtgcacggtgataatgaaacagatagagatgctgaggc
attgagaaactagcaacagtggacagtcattgccacagtgtgctagcctt
gatgtctagaagcatgaatgaatgctggggacaggacctgcagccagcga
gggaagccctaggccaggggtatgccttagggcaaaagaagagtggccct
ttctttcttgtctttccatggccagtggagcttcctggtgttcccagatc
caacaagcaagggagccaagggatattctcccacagggatggctttctag
gagaccacagagagaggaaaaagcagagagcagcatcactctatgtgact
tttaaacacagcattagctagggaggcttgtacaggagtctaagggaata
tttttttttttctaggaaaactctcagaggcagagcagagaaaaaccagc
ttcaaacttagggttcagtgaagaccaactcactgcacgacggaagacat
attacggttatcacacttatgctggct
atctagggaggcttagaattctggacatggttgataactcagcaatatag
gcggtcctgtatctgagtgggagattaatcatatttattgagtctggact
actaaggtttagaactttatctttgatttactaggagatatgtgaaaaat
ttaatcgttgtgtttctgttaaaagaaaggggatttgatggagtttcata
ggatgtttcctttatatttgatttatccttggaaagacgcatccaagtcc
ggagtgtgcttcagtcctgtctcagagtctgcaccgcgtagtgacaataa
atacaaacgggagagcttagctgtctgtttggagaggtgctactaaaagg
tcacctcaggacttttatcattagcatgactttgagatgtgaaaactgca
tgtaccgactgctccatttagtcacatttgattctattgcaatgagatcc
tgatctgttctgcaaggcagccatctttagtttccagatcagagttcatt
attcttcccttagtaagatgtgccagttatgcttaatacatactttattg
tgttgtgtagaatcagcagatgtatgctgaagaccttgccaggagaaatc
atgatgttttgcttactagcattcttcttctttcagtccagtttaatcga
cctcaaagaacatgcatcctcgttagcttctgcaggactgaaaagggact
ccaaactgaagtctctagaaatagccattgaacaaaagaaggaggaatgt
aacaactggaggcacaattaaaaaaggtaagcgaagtctaagaagaaatg
tgctgattttagagtgaatttataacacagtttaaggaataagcattttt
tttttcgtttttcaaaataaacaactctttatcatttgctgtctgctaat
gaaaggatttagttaaacactcaagttgatttcccaaggagtctgcatca
agtctcttctctctaatctaagagaaaaaaaaactatctgagttcctatc
aaaagaaaacttgaaaaagataaaatagtagcagactgaaaggattacac
tagccacttattctctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_28965128_28966333
seq2: B6Ng01-215K20.b_45_1221 (reverse)

seq1  AGCCAGCATAAAGTTGTGATAACAGTTAAATTATTGTCTTTCTGCTCCCT  50
      |||||||||||   ||||||||| || | |    ||||||       || 
seq2  AGCCAGCATAA--GTGTGATAACCGTAATA----TGTCTT-------CCG  37

seq1  TTTCAAATTGATGTTTTGTGTTCCTTTCACTGAACCCTAAGTTTGGAGCT  100
      |     | ||| ||    || ||  |||||||||||||||||||| ||||
seq2  TCGTGCAGTGA-GT----TGGTC--TTCACTGAACCCTAAGTTTGAAGCT  80

seq1  GTTTTTTTCCTCCTGGCTCTGCCTCTGAGAAGTTTTCTTAGGAAAAAAAA  150
      | |||||  ||    |||||||||||||| ||||||| |||  |||||||
seq2  GGTTTTTCTCT----GCTCTGCCTCTGAG-AGTTTTCCTAG--AAAAAAA  123

seq1  AAATTGTTCCCTTAGACTCCTGTACAAGGCTTCCCTAGCTAATGCTGTGT  200
      ||| | ||||||||||||||||||||| || |||||||||||||||||||
seq2  AAAATATTCCCTTAGACTCCTGTACAA-GCCTCCCTAGCTAATGCTGTGT  172

seq1  TTAAAGGTCACATAGAGTTGGTGCTTGCTCTCTGC-TTTTCCTCTCTCTG  249
      ||||| ||||||||||| || ||| |||||||||| ||||||||||||||
seq2  TTAAAAGTCACATAGAG-TGATGC-TGCTCTCTGCTTTTTCCTCTCTCTG  220

seq1  TGGTTCTCCTAG-AAGCCATCCCTGTGGGAGAATATCCCTTGGCTCCCTT  298
      ||| |||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGG-TCTCCTAGAAAGCCATCCCTGTGGGAGAATATCCCTTGGCTCCCTT  269

seq1  GCTTGTTGGATCTGGGAACACCAGGAAGCTCCACTGGCCATGGAAAGACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTGGATCTGGGAACACCAGGAAGCTCCACTGGCCATGGAAAGACA  319

seq1  AGAAAGAAAGGGCCACTCTTCTTTTGCCCTAAGGCATACCCCTGGCCTAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGGGCCACTCTTCTTTTGCCCTAAGGCATACCCCTGGCCTAG  369

seq1  GGCTTCCCTCGCTGGCTGCAGGTCCTGTCCCCAGCATTCATTCATGCTTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCCTCGCTGGCTGCAGGTCCTGTCCCCAGCATTCATTCATGCTTC  419

seq1  TAGACATCAAGGCTAGCACACTGTGGCAATGACTGTCCACTGTTGCTAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACATCAAGGCTAGCACACTGTGGCAATGACTGTCCACTGTTGCTAGT  469

seq1  TTCTCAATGCCTCAGCATCTCTATCTGTTTCATTATCACCGTGCACCTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAATGCCTCAGCATCTCTATCTGTTTCATTATCACCGTGCACCTCT  519

seq1  CCTTCACTGATGTCTGCTCATTGCAAATGTGTGCTGAGTTCTGTTTCCTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACTGATGTCTGCTCATTGCAAATGTGTGCTGAGTTCTGTTTCCTC  569

seq1  CAGAAGCCAGAGGGACACAGTGGGAAAAGTTACGGTGTCATGGTCAAGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCCAGAGGGACACAGTGGGAAAAGTTACGGTGTCATGGTCAAGTA  619

seq1  CATGGAATTTGCTCCAATAGTTTAAGAAAGTGTCATTTAAAAAGACTTAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAATTTGCTCCAATAGTTTAAGAAAGTGTCATTTAAAAAGACTTAC  669

seq1  ATTCACATATTAAATAAATCGGGGAAGAGAAACATTGTTTAACTCTAAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACATATTAAATAAATCGGGGAAGAGAAACATTGTTTAACTCTAAAA  719

seq1  TCACAACTTTAAAACAAAACTGCTATTTCTTAAAATGAATAGCTTTCAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACTTTAAAACAAAACTGCTATTTCTTAAAATGAATAGCTTTCAGA  769

seq1  TTACCCTTTGGCATGAATGATTCCTGCGGCTCCTACCTTAGAAAAATATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTTTGGCATGAATGATTCCTGCGGCTCCTACCTTAGAAAAATATT  819

seq1  TAGCTGAGGATCTGAGAGCCGTCCTCTGTCATCAACAGTGGAAGCAGCAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGAGGATCTGAGAGCCGTCCTCTGTCATCAACAGTGGAAGCAGCAG  869

seq1  CTACTCTACACTGTCCCAGGGAAGCCTCCTTTGTTCTGTCTTCCTCTCTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTACACTGTCCCAGGGAAGCCTCCTTTGTTCTGTCTTCCTCTCTA  919

seq1  AGTTGATTGTCTGAAAGGGAGAAGCTCTTGAGGTGGAATACAAAAGAGCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATTGTCTGAAAGGGAGAAGCTCTTGAGGTGGAATACAAAAGAGCA  969

seq1  TCCTAGAGGTGTGGTGTAAATGTCTGGTCAACAATTGTCTAATCAAAGAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAGGTGTGGTGTAAATGTCTGGTCAACAATTGTCTAATCAAAGAC  1019

seq1  CAACCTAGCTTATAGCATGGGTCAACATGTAGTAAAGGAGGAGCAGGTGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTAGCTTATAGCATGGGTCAACATGTAGTAAAGGAGGAGCAGGTGG  1069

seq1  GGCTGTAAGAATGTCATACAGACATAGCATTGAGCTGTGTCAAGTGGAAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTAAGAATGTCATACAGACATAGCATTGAGCTGTGTCAAGTGGAAA  1119

seq1  AGCAGATGAAGGGGCAGAGCTGATAGAAGGTGAAGGGAGCATTTTAAGAA  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATGAAGGGGCAGAGCTGATAGAAGGTGAAGGGAGCATTTTAAGAA  1169

seq1  GAGAATTC  1206
      ||||||||
seq2  GAGAATTC  1177

seq1: chr14_28837583_28838655
seq2: B6Ng01-215K20.g_77_1144

seq1  ATCTAGGGAGGCTTAGAATTCTGGACATGGTTGATAACTCAGCAATATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGGGAGGCTTAGAATTCTGGACATGGTTGATAACTCAGCAATATAG  50

seq1  GCGGTCCTGTATCTGAGTGGGAGATTAATCATATTTATTGAGTCTGGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTCCTGTATCTGAGTGGGAGATTAATCATATTTATTGAGTCTGGACT  100

seq1  ACTAAGGTTTAGAACTTTATCTTTGATTTACTAGGAGATATGTGAAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGTTTAGAACTTTATCTTTGATTTACTAGGAGATATGTGAAAAAT  150

seq1  TTAATCGTTGTGTTTCTGTTAAAAGAAAGGGGATTTGATGGAGTTTCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCGTTGTGTTTCTGTTAAAAGAAAGGGGATTTGATGGAGTTTCATA  200

seq1  GGATGTTTCCTTTATATTTGATTTATCCTTGGAAAGACGCATCCAAGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTTCCTTTATATTTGATTTATCCTTGGAAAGACGCATCCAAGTCC  250

seq1  GGAGTGTGCTTCAGTCCTGTCTCAGAGTCTGCACCGCGTAGTGACAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTGCTTCAGTCCTGTCTCAGAGTCTGCACCGCGTAGTGACAATAA  300

seq1  ATACAAACGGGAGAGCTTAGCTGTCTGTTTGGAGAGGTGCTACTAAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAACGGGAGAGCTTAGCTGTCTGTTTGGAGAGGTGCTACTAAAAGG  350

seq1  TCACCTCAGGACTTTTATCATTAGCATGACTTTGAGATGTGAAAACTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTCAGGACTTTTATCATTAGCATGACTTTGAGATGTGAAAACTGCA  400

seq1  TGTACCGACTGCTCCATTTAGTCACATTTGATTCTATTGCAATGAGATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCGACTGCTCCATTTAGTCACATTTGATTCTATTGCAATGAGATCC  450

seq1  TGATCTGTTCTGCAAGGCAGCCATCTTTAGTTTCCAGATCAGAGTTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGTTCTGCAAGGCAGCCATCTTTAGTTTCCAGATCAGAGTTCATT  500

seq1  ATTCTTCCCTTAGTAAGATGTGCCAGTTATGCTTAATACATACTTTATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCCCTTAGTAAGATGTGCCAGTTATGCTTAATACATACTTTATTG  550

seq1  TGTTGTGTAGAATCAGCAGATGTATGCTGAAGACCTTGCCAGGAGAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTAGAATCAGCAGATGTATGCTGAAGACCTTGCCAGGAGAAATC  600

seq1  ATGATGTTTTGCTTACTAGCATTCTTCTTCTTTCAGTCCAGTTTAATCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTTTTGCTTACTAGCATTCTTCTTCTTTCAGTCCAGTTTAATCGA  650

seq1  CCTCAAAGAACATGCATCCTCGTTAGCTTCTGCAGGACTGAAAAGGGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAGAACATGCATCCTCGTTAGCTTCTGCAGGACTGAAAAGGGACT  700

seq1  CCAAACTGAAGTCTCTAGAAATAGCCATTGAACAAAAGAAGGAGGAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTGAAGTCTCTAGAAATAGCCATTGAACAAAAGAAGGAGGAATGT  750

seq1  AACAAACTGGAGGCACAATTAAAAAAGGTAAGCGAAGTCTAAGAAGAAAT  800
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAC-AACTGGAGGCACAATTAAAAAAGGTAAGCGAAGTCTAAGAAGAAAT  799

seq1  GTGCTGATTTTAGAGTGAATTTATAACACAG-TTAAGGAATAAGCA-TTT  848
      ||||||||||||||||||||||||||||||| |||||||||||||| |||
seq2  GTGCTGATTTTAGAGTGAATTTATAACACAGTTTAAGGAATAAGCATTTT  849

seq1  TTTTTTCGTTTTTCAAAATAAACAAACTCTTTATCATTTGCTGTCTGCTA  898
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTTTTCGTTTTTCAAAATAAAC-AACTCTTTATCATTTGCTGTCTGCTA  898

seq1  ATGAAAGGATTTTAGTTAAACACTCAAGTTGATTT-CCAAGGAGTCTGCA  947
      ||||||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  ATGAAAGGA-TTTAGTTAAACACTCAAGTTGATTTCCCAAGGAGTCTGCA  947

seq1  TCAAGTCTC-TCTCTCTAAATCTAAAGAGAAAAAAAAAACTATCTGAAGT  996
      ||||||||| ||||||| ||||| ||||| |||||||||||||||||   
seq2  TCAAGTCTCTTCTCTCT-AATCT-AAGAG-AAAAAAAAACTATCTGA--G  992

seq1  TTCCTATCAAAAGAAAACTTGAAAAAGATAAAATAGTAGCAGAACTGAAA  1046
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTCCTATCAAAAGAAAACTTGAAAAAGATAAAATAGTAGCAG-ACTGAAA  1041

seq1  GAATAACAACTAGCCAC-TATTCTCTGG  1073
      | || || ||||||||| ||||||||||
seq2  GGATTAC-ACTAGCCACTTATTCTCTGG  1068