BAC Information

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BAC

Clone NameB6Ng01-216D01
Chromosome14 (Build37)
Map Location 43,925,825 - 44,100,758
singlet/doubletdoublet
Overlap geneLOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502
Upstream geneEG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471
Downstream geneLOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216D01.bB6Ng01-216D01.g
ACCGA032943GA032944
length589893
definitionB6Ng01-216D01.b B6Ng01-216D01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,100,166 - 44,100,758)(43,925,825 - 43,926,712)
sequence
aattttcaacgcttgttaagcttatataactttcaggaatattcagttat
tgcagttgttgcgaagtgcggtgatggtgttgtactgttatccagtttat
actgggggtgggggtggggtcggtcaacagcgattttgtggaatctgata
gtgtttctggtaaaagataccagactcgaaagattacatagagcgtgaca
ttcagtagggcatgtacagagttatgttaaaatatttatgtaaaaaaccc
tctccaatctctggcacaattagatatgatgcactaatcagtgtagtatg
agatctcccagatgtcagctacttcaggcttctctagaaaactcctcaaa
atagatgccttattttcatctctccaattctatgtaattcccccttcatc
tgcttttccttttccagatttaaaaagctaacacactattatatttcact
gtatagccgtgtcatggagctctgagcactcaactgtctcttattctatg
gaccattacaaacttggtgctatggatatctattaatcatttgtctactg
taagggaattttctctgatgatgtgaaaggtgtactcct
gaattcattcactgtttttttgttttttaacattagaacttcataagttt
taatttttattcaagggaaaacaaaaagttacacaatttgacgtaaaatt
cctcccacatgacacatatcctgtatgtaacactaaactcccagtttagt
gataaattcatattctaagaaattcacaaagatgattttgatttgcaagt
gtggaatatgactgacagtataagtataaaatcactgggtccagccatga
gtcttgaatgctgtgttttcaggtgaagaacattcgacaaaggattcaga
ctttggttcagtttgtaaactttgcacaaattttgttatgatagcctgct
gcccacagaggaaattatccataaaccaaaacaaccttataatttattat
tatttttttgtttatgtttttgttttttttcagagctgaggaaggaaccc
agggccttgcacttgctaggcaagcactctaccactgatctaaatcccca
acccctagtttattattttaatgcaagccattgtaactcttctttgggtc
tgaatttttaatcatctggtatgtaatgtgaaccataaccagggaaagta
cacaatgctaaattaacataaaacataagctgtagcagaagataagaaag
gacaccaagagaggtaaaatctggtacagtctgcttcattgttttggggg
gttgtttttgacattgtccaagtgatttttaatctaaaccatgagatttc
ttcatctgcttggtaacagttgtttctaacactataattaaaaattacta
caaagtatagaataaacactctttgtgttataaactattgccacttacta
tttttttgattaaattatttaattaaatggattacttgacacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_44100166_44100758
seq2: B6Ng01-216D01.b_42_636 (reverse)

seq1  AGGAGTACACCTTTCACATCATCAGAGAAAATTCCCTTACAGTAGAC-AA  49
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGGAGTACACCTTTCACATCATCAGAGAAAATTCCCTTACAGTAGACAAA  50

seq1  TGATTAATAGATATCCATAGCACC-AGTTTTTAATGGTCCATAGAATAAG  98
      |||||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  TGATTAATAGATATCCATAGCACCAAGTTTGTAATGGTCCATAGAATAAG  100

seq1  AGACAGTTGAGTGCTCAGAGCTCCATGACACGGCTATACAGTGAAATATA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTTGAGTGCTCAGAGCTCCATGACACGGCTATACAGTGAAATATA  150

seq1  ATAGTGTGTTAGCTTTTTAAATCTGGAAAAGGAAAAGCAGATGAAGGGGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTGTTAGCTTTTTAAATCTGGAAAAGGAAAAGCAGATGAAGGGGG  200

seq1  AATTACATAGAATTGGAGAGATGAAAATAAGGCATCTATTTTGAGGAGTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACATAGAATTGGAGAGATGAAAATAAGGCATCTATTTTGAGGAGTT  250

seq1  TTCTAGAGAAGCCTGAAGTAGCTGACATCTGGGAGATCTCATACTACACT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAGAAGCCTGAAGTAGCTGACATCTGGGAGATCTCATACTACACT  300

seq1  GATTAGTGCATCATATCTAATTGTGCCAGAGATTGGAGAGGGTTTTTTAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGTGCATCATATCTAATTGTGCCAGAGATTGGAGAGGGTTTTTTAC  350

seq1  ATAAATATTTTAACATAACTCTGTACATGCCCTACTGAATGTCACGCTCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATTTTAACATAACTCTGTACATGCCCTACTGAATGTCACGCTCT  400

seq1  ATGTAATCTTTCGAGTCTGGTATCTTTTACCAGAAACACTATCAGATTCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATCTTTCGAGTCTGGTATCTTTTACCAGAAACACTATCAGATTCC  450

seq1  ACAAAATCGCTGTTGACCGACCCCACCCCCACCCCCAGTATAAACTGGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCGCTGTTGACCGACCCCACCCCCACCCCCAGTATAAACTGGAT  500

seq1  AACAGTACAACACCATCACCGCACTTCGCAACAACTGCAATACCTGAATA  548
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AACAGTACAACACCATCACCGCACTTCGCAACAACTGCAATAACTGAATA  550

seq1  TTCCTGAAAGTTATATAAGCTTAACAAGCGTTGAAAATTGAATTC  593
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAAAGTTATATAAGCTTAACAAGCGTTGAAAATTGAATTC  595

seq1: chr14_43925825_43926712
seq2: B6Ng01-216D01.g_69_961

seq1  GAATTCATTCACTGTTTTTTTGTTTTTTAACATTAGAACTTCATAGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAATTCATTCACTGTTTTTTTGTTTTTTAACATTAGAACTTCATAAGTTT  50

seq1  TAATTTTTATTCAAGGGAAAACAAAAAGTTACACAATTTGACGTAAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTATTCAAGGGAAAACAAAAAGTTACACAATTTGACGTAAAATT  100

seq1  CCTCCCACATGACACATATCCTTTATGTAACACTAAACTCCCAGTTTAGT  150
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCTCCCACATGACACATATCCTGTATGTAACACTAAACTCCCAGTTTAGT  150

seq1  GATAAATTCATATTCTAAGAAATTCACAAAGATGATTTTGATTTGCAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATTCATATTCTAAGAAATTCACAAAGATGATTTTGATTTGCAAGT  200

seq1  GTGGAATATGACTGACAGTATAAGTATAAAATCACTGGGTCCAGCCATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATATGACTGACAGTATAAGTATAAAATCACTGGGTCCAGCCATGA  250

seq1  GTCTTGAATGCTGTGTTTTCAGGTGAAGAACATTCGACAAAGGATTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGAATGCTGTGTTTTCAGGTGAAGAACATTCGACAAAGGATTCAGA  300

seq1  CTTTGGTTCAGTTTGTAAACTTTGCACAAATTTTGTTATGATAGCCTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTTCAGTTTGTAAACTTTGCACAAATTTTGTTATGATAGCCTGCT  350

seq1  GCCCACAGAGGAAATTATCCATAAACCAAAACAACCTTATAATTTATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACAGAGGAAATTATCCATAAACCAAAACAACCTTATAATTTATTAT  400

seq1  TATTTTTTTGTTTATGTTTTTGTTTTTTTTCAGAGCTGAGGAAGGAACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTGTTTATGTTTTTGTTTTTTTTCAGAGCTGAGGAAGGAACCC  450

seq1  AGGGCCTTGCACTTGCTAGGCAAGCACTCTACCACTGATCTAAATCCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCTTGCACTTGCTAGGCAAGCACTCTACCACTGATCTAAATCCCCA  500

seq1  ACCCCTAGTTTATTATTTTAATGCAAGCCATTGTAACTCTTCTTTGGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTAGTTTATTATTTTAATGCAAGCCATTGTAACTCTTCTTTGGGTC  550

seq1  TGAATTTTTAATCATGTGGTATGTAATGTGAACCATAACCAGGGAAAGTA  600
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGAATTTTTAATCATCTGGTATGTAATGTGAACCATAACCAGGGAAAGTA  600

seq1  CACAATGCTAAATTAACATAAAACATAAGTTGTAGCAGAAGATAAGAAAG  650
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CACAATGCTAAATTAACATAAAACATAAGCTGTAGCAGAAGATAAGAAAG  650

seq1  GACACCAAGAGAGGTAAAATCTGGTACAGTCCGCTTCATTGTTTTGGGGG  700
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GACACCAAGAGAGGTAAAATCTGGTACAGTCTGCTTCATTGTTTTGGGGG  700

seq1  GTTGTTTTTGACAACGTCCAAGTGATTTTTAATCTAAACCATGAGATTTC  750
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  GTTGTTTTTGACATTGTCCAAGTGATTTTTAATCTAAACCATGAGATTTC  750

seq1  -TCATCTGCTTGATAACAGTTGTTTTCTAACACTATAATTAAAAA-TACT  798
       ||||||||||| ||||||||| |||||||||||||||||||||| ||||
seq2  TTCATCTGCTTGGTAACAGTTG-TTTCTAACACTATAATTAAAAATTACT  799

seq1  ACACAGTATAGAATAAACAC---TTGTGTTATAAACTATTTGCCCCTTAC  845
      ||| ||||||||||||||||   ||||||||||||||| ||||| |||||
seq2  ACAAAGTATAGAATAAACACTCTTTGTGTTATAAACTA-TTGCCACTTAC  848

seq1  TA-TTTTTTGAATAAATTATTTAATTAAAT-GAATACATGACACC  888
      || |||||||| |||||||||||||||||| || ||| |||||||
seq2  TATTTTTTTGATTAAATTATTTAATTAAATGGATTACTTGACACC  893