BAC Information

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BAC

Clone NameB6Ng01-216P01
Chromosome11 (Build37)14 (Build37)
Map Location 100,884,522 - 100,885,584110,739,779 - 110,740,540
singlet/doubletsingletsinglet
Overlap geneAtp6v0a1
Upstream geneKrt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf
Downstream geneNaglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216P01.bB6Ng01-216P01.g
ACCGA033493GA033494
length1,052980
definitionB6Ng01-216P01.b B6Ng01-216P01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(100,884,522 - 100,885,584)(110,739,779 - 110,740,540)
sequence
gaattcacccagaggagatggcagatggaagagaaaaataaagaaagcag
atgggtggagaacagagaaggaaagggaggcggggatctgcatgccatta
accattactttcccagtcttctttgcgttcccatatgttatggtgcttat
ggtaaaagatgcagagaaacctctccaactcttacagttcttcataagca
agaagactagaaaaggataatcattaataaatcatcttaaatgctctggg
taagaaatggctacgttgaattaacaatcatcttaaatcataagcatatt
caatatttgcttacttttccctttctacacaccctgccaattattgtcac
ccataggaaagcatcgttttctgatttagccacttttgactgattactct
gagttatcgattgagttcacccaattataagagaagaggagaggttctgt
ggttggcagtgtttggtgccattgcaaacatgaagcaaaatctcattccg
aactgaatttccgacatctgaggtcccaggttggctcacctttctgtgtt
gcttaaacgtgcacctgcacgtacaatgtggtcacccagtgagactttgc
ctctggtgagggcagcagcatctgcaatggctacccggcagggcgaggtc
tatggaaagggactggctgagactgtgggacggtggcaatgggccaggtg
caagctgcacatggtgagagaaagcacggtgaatgtggccagaaaggctg
tgcactgctggctcgtgcttgaaatgaggggagattgatgaaaaaagcgg
tggagaagctcttggagccaaggcggtaggctcaaagcactggggagatc
gggcagggctggggtggctcagcataagaaagagagaacccaccgtggat
agagcagaaggccagaagacttggagtctcttttaagactggatttaatg
tttagactatatcataaaaaaaaaaaaaagagtcccgttatgtcttttct
tctgactgttttctttctgttttttgggtttttagttttggttttttttt
tg
gaattcacctgtctttgccttacaagtgaaagctgggattaaaagcctgc
actaccacacccagccaagatctagagtctgattctagctgcaggtggct
ccaaacaagtttcccagttcctaattctcactttaagatggtttggagga
ttagtggtcagtggctgaaagccactacggggggggggggtcatgacacg
ggtaaagttcttgagactcttccgactgcaatatgagtcaaggcaagcaa
tggtctcaggggttacttcctgcagttatagctgccttggcatgcctgca
cttctcagtggaacacccagactatcagagcctcagcctctgagcccaat
gtattaagcccattctttggtttcttcagtacttgtggttaatgaatact
gctttgcatcttgaagtcaattcctattatttgaagattttcatataaat
gaattttaactcattaaaatgcagctataatctttgggtctatattaaca
gtgccttagtgaatagtcatggacatgcaagaaatagtgaatacctcaga
gtggataaagaacatttaaaaataaaaataaaatatacaaaacatggagg
aaaatgtgtttcataatttaaaatctgtcaattcatttcattcattctgt
ttttattgttactttttttggtttttcaagacaggggtttctctttattt
gttatatttgaagatgattttttaaatcataaattctgccttttgataat
tctattttgaataattgaggggaaaatagaacattaagaaaaaccacctt
ccccatttttaaatatttctttattgaagctatacaatatatattttata
ttatcaagctcagtttttttcctgctcatcaaaattttggaacctcttct
cttcctggttgaaaagtaaacatactacacacattttcagaaaattgttt
taaaatttttcttcttccaatttcattgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_100884522_100885584
seq2: B6Ng01-216P01.b_31_1082 (reverse)

seq1  CAAAAAAAAAACCCAAAAACTAAAAACCCAAAAAACAGAAAGAAAAACAG  50
      |||||||||||||  ||||||||||||||||||||||||||| |||||||
seq2  CAAAAAAAAAACC--AAAACTAAAAACCCAAAAAACAGAAAG-AAAACAG  47

seq1  TCAGAAAGAAAAGAACATAAACGGGACTCCTTTTTTTTTTTTTAATGATA  100
      |||| |||||||| |||| ||||||||| |||||||||||||| ||||||
seq2  TCAG-AAGAAAAG-ACAT-AACGGGACT-CTTTTTTTTTTTTTTATGATA  93

seq1  ATTAAGTCTAAACATTAAATCCAGTCTTAAAAGAGACTCCAAGTCTTTCT  150
          ||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ---TAGTCTAAACATTAAATCCAGTCTTAAAAGAGACTCCAAGTC-TTCT  139

seq1  GGCCTTCCTGCTCTATCCACGGTGGGTTCTCTCTTTCTTATGCTGAGCCA  200
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTT-CTGCTCTATCCACGGTGGGTTCTCTCTTTCTTATGCTGAGCCA  188

seq1  CCCCAGCCCTGCCCGATCTCCCCAGTGCTTTGAGCCTACCGCCTTGGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCCCTGCCCGATCTCCCCAGTGCTTTGAGCCTACCGCCTTGGCTC  238

seq1  CAAGAGCTTCTCCACCGCTTTTTTCATCAATCTCCCCTCATTTCAAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCTTCTCCACCGCTTTTTTCATCAATCTCCCCTCATTTCAAGCAC  288

seq1  GAGCCAGCAGTGCACAGCC-TTCTGGCCACATTCACCGTGCTTTCTCTCA  349
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAGCCAGCAGTGCACAGCCTTTCTGGCCACATTCACCGTGCTTTCTCTCA  338

seq1  CCATGTGCAGCTTGCACCTGGCCCATTGCCACCGTCCCACAGTCTCAGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGCAGCTTGCACCTGGCCCATTGCCACCGTCCCACAGTCTCAGCC  388

seq1  AGTCCCTTTCCATAGACCTCGCCCTGCCGGGTAGCCATTGCAGATGCTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTTTCCATAGACCTCGCCCTGCCGGGTAGCCATTGCAGATGCTGC  438

seq1  TGCCCTCACCAGAGGCAAAGTCTCACTGGGTGACCACATTGTACGTGCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCACCAGAGGCAAAGTCTCACTGGGTGACCACATTGTACGTGCAG  488

seq1  GTGCACGTTTAAGCAACACAGAAAGGTGAGCCAACCTGGGACCTCAGATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACGTTTAAGCAACACAGAAAGGTGAGCCAACCTGGGACCTCAGATG  538

seq1  TCGGAAATTCAGTTCGGAATGAGATTTTGCTTCATGTTTGCAATGGCACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAAATTCAGTTCGGAATGAGATTTTGCTTCATGTTTGCAATGGCACC  588

seq1  AAACACTGCCAACCACAGAACCTCTCCTCTTCTCTTATAATTGGGTGAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTGCCAACCACAGAACCTCTCCTCTTCTCTTATAATTGGGTGAAC  638

seq1  TCAATCGATAACTCAGAGTAATCAGTCAAAAGTGGCTAAATCAGAAAACG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCGATAACTCAGAGTAATCAGTCAAAAGTGGCTAAATCAGAAAACG  688

seq1  ATGCTTTCCTATGGGTGACAATAATTGGCAGGGTGTGTAGAAAGGGAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTCCTATGGGTGACAATAATTGGCAGGGTGTGTAGAAAGGGAAAA  738

seq1  GTAAGCAAATATTGAATATGCTTATGATTTAAGATGATTGTTAATTCAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCAAATATTGAATATGCTTATGATTTAAGATGATTGTTAATTCAAC  788

seq1  GTAGCCATTTCTTACCCAGAGCATTTAAGATGATTTATTAATGATTATCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCATTTCTTACCCAGAGCATTTAAGATGATTTATTAATGATTATCC  838

seq1  TTTTCTAGTCTTCTTGCTTATGAAGAACTGTAAGAGTTGGAGAGGTTTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGTCTTCTTGCTTATGAAGAACTGTAAGAGTTGGAGAGGTTTCT  888

seq1  CTGCATCTTTTACCATAAGCACCATAACATATGGGAACGCAAAGAAGACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCTTTTACCATAAGCACCATAACATATGGGAACGCAAAGAAGACT  938

seq1  GGGAAAGTAATGGTTAATGGCATGCAGATCCCCGCCTCCCTTTCCTTCTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGTAATGGTTAATGGCATGCAGATCCCCGCCTCCCTTTCCTTCTC  988

seq1  TGTTCTCCACCCATCTGCTTTCTTTATTTTTCTCTTCCATCTGCCATCTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCCACCCATCTGCTTTCTTTATTTTTCTCTTCCATCTGCCATCTC  1038

seq1  CTCTGGGTGAATTC  1063
      ||||||||||||||
seq2  CTCTGGGTGAATTC  1052

seq1: chr14_110739779_110740540
seq2: B6Ng01-216P01.g_259_1043 (reverse)

seq1  GCAATGAAATTTG-AGAAGAAAA--TTTAAA--CATCTTCTGAAA---TG  42
      ||||||||||| | |||||||||  ||||||   || ||||||||   ||
seq2  GCAATGAAATTGGAAGAAGAAAAATTTTAAAACAATTTTCTGAAAATGTG  50

seq1  TGTAGTATTGTTTACTTTTCAA-CAAGAAGAG-AGAGG-TACAAAAATTT  89
      ||||||| |||||||||||||| || |||||| ||||| | ||||| |||
seq2  TGTAGTA-TGTTTACTTTTCAACCAGGAAGAGAAGAGGTTCCAAAATTTT  99

seq1  GATGGGCAGG-AAAAAACTGAGCTTGAT-ATAT-AAATATATATTGTATA  136
      |||| ||||| ||||||||||||||||| |||| ||||||||||||||||
seq2  GATGAGCAGGAAAAAAACTGAGCTTGATAATATAAAATATATATTGTATA  149

seq1  -CTTCAATTAAAGAAATATTTGAAAAT-GGGAAGGTG--TTTTCTTAATG  182
       |||||| ||||||||||||| ||||| |||||||||  |||||||||||
seq2  GCTTCAA-TAAAGAAATATTTAAAAATGGGGAAGGTGGTTTTTCTTAATG  198

seq1  TTCTATTTT-CCCTCAATTATTCAAAATAGAATTATCAAAAGGCAGAA-T  230
      ||||||||| |||||||||||||||||||||||||||||||||||||| |
seq2  TTCTATTTTCCCCTCAATTATTCAAAATAGAATTATCAAAAGGCAGAATT  248

seq1  TATGATTT-AAAAATCATCTTCAAATATAACAA--TAAGAGAAA-CCCTG  276
      |||||||| ||||||||||||||||||||||||   |||||||| |||||
seq2  TATGATTTAAAAAATCATCTTCAAATATAACAAATAAAGAGAAACCCCTG  298

seq1  TCTTGAAAAACCAAAAAAAGTAACAATAAAAACAGAATGAATG-AATGAA  325
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTTGAAAAACCAAAAAAAGTAACAATAAAAACAGAATGAATGAAATGAA  348

seq1  TTGACAGATTTTAAATTATGAAACACATTTTCCTCCATGTTTTGTATATT  375
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGATTTTAAATTATGAAACACATTTTCCTCCATGTTTTGTATATT  398

seq1  TTATTTTTATTTTTAAATGTTCTTTATCCACTCTGAGGTATTCACTATTT  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTATTTTTAAATGTTCTTTATCCACTCTGAGGTATTCACTATTT  448

seq1  CTTGCATGTCCATGACTATTCACTAAGGCACTGTTAATATAGACCCAAAG  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATGTCCATGACTATTCACTAAGGCACTGTTAATATAGACCCAAAG  498

seq1  ATTATAGCTGCATTTTAATGAGTTAAAATTCATTTATATGAAAATCTTCA  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGCTGCATTTTAATGAGTTAAAATTCATTTATATGAAAATCTTCA  548

seq1  AATAATAGGAATTGACTTCAAGATGCAAAGCAGTATTCATTAACCACAAG  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAGGAATTGACTTCAAGATGCAAAGCAGTATTCATTAACCACAAG  598

seq1  TACTGAAGAAACCAAAGAATGGGCTTAATACATTGGGCTCAGAGGCTGAG  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAGAAACCAAAGAATGGGCTTAATACATTGGGCTCAGAGGCTGAG  648

seq1  GCTCTGATAGTCTGGGTGTTCCACTGAGAAGTGCAGGCATGCCAAGGCAG  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGATAGTCTGGGTGTTCCACTGAGAAGTGCAGGCATGCCAAGGCAG  698

seq1  CTATAACTGCAGGAAGTAACCCCTGAGACCATTGCTTGCCTTGACTCATA  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACTGCAGGAAGTAACCCCTGAGACCATTGCTTGCCTTGACTCATA  748

seq1  TTGCAGTCGGAAGAGTCTCAAGAACTTTACCTGTGTC  762
      ||||||||||||||||||||||||||||||| |||||
seq2  TTGCAGTCGGAAGAGTCTCAAGAACTTTACCCGTGTC  785