BAC Information

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BAC

Clone NameB6Ng01-217A11
Chromosome14 (Build37)
Map Location 114,434,292 - 114,567,217
singlet/doubletdoublet
Overlap genenone
Upstream geneTpm3-rs7, LOC100043510, LOC382947
Downstream geneLOC668791, LOC100043821, LOC100043521, Gpc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217A11.bB6Ng01-217A11.g
ACCGA033559GA033560
length1,1071,105
definitionB6Ng01-217A11.b B6Ng01-217A11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,434,292 - 114,435,421)(114,566,112 - 114,567,217)
sequence
gaattcactgtgatacactatccaggaatcagtaaatgtacattaaaatg
taacatctgaaaaaaatgcaatataagccaactacatgatctcagaaaaa
ctaacataatcatatttatttcataagatatgactagtcttttatatgtt
aacatctaaaacctgaactacattttctatctccataaatataatgaatc
ctaccatcaaaaatatcaccatatggaattcactatttttatccaatgtt
taagaaatagaaggcagttaagataatataaaaccagtctgctagacatg
caatagatttctctctgggaagttattatagtgttattttcatataattc
agccactgattggtataatactattatattcatgtacttctactgtaggg
atgcatgagttttaaaaagtataaaatcatgtaaaacataacaatatctt
ctttacaaaacctatctacaacatattcaaatgagatgtgttaatgtcct
tatgcatattttccattaatatgacctattcatattctataaagatttga
aatattaaaaagaaattcatatgtataaaattaactcaataacatatttg
ttagttttaaaaatagtattcttcaatgacttttttgttattgaactatt
atacctagcctaagaaatccagaagacttcctcaaaatattgtttttact
agaaaacctttattgcaatctattttgtataatcgctatttgttgcaatc
atgttttctatttagtttgctaaaaaggcctcttttttctttgtctgtga
tatttttgcatttcaagagaataatctaaacactgtatatacttttccct
gagtcttgtttacagtggagggctggaaatcttcaagctgacttctcctg
tttatatgtatcaaaacaaagttgtctacctcatagggttgataaattca
tgcactcacgaagagtgttggctgcagaaatttacagatgatcaagcaag
tcagattcagcatgagcgcaagacattcatacctggaggagccattggca
gtcatgtgcgagtaggatggtcacttactgatcctcttgggaatacaaat
aaaacag

gaattccagaccatggtttctaccctgccttgttcatagttcccagacaa
gacacacacacagccattatatttttaataagccttaagcagtacaaaag
ctggacagatacctagccttcatgctattggaatctactttcctatcgat
aaccccaagttattactaagtttcatctgagctgctcctagctccaattg
ggcagccctccaggccacgctatcttgactgttaacccatggttatgaag
agtctttggaggcttcctttcatatattcttttaattattcaaagaacac
atggaggaagaagaaataatggatttccataatcttgtggctagttagcc
tggtttattttgtgagcacaaagccagacacaactgcttatcaaaactca
tgtttcacccaagaacctatataatatcctatattagatgttaaaatggt
ctcatatgtagccatttcaatatagaaaagaatcaagaaacctgatgata
aaaattgatagaatgtatttttatatattatattagagatacttgatata
atgttagtgtgatatttttcatgtaaaggagacaatgaaaacctctttgg
agaaagaaggtctggaatttaataagggacacaaaaggtgtgttgtttaa
aatgttcaaagaatccatagtgtattaattattgaaactcagaagtagtt
atttggtaaaatgcacgatgaatgtaccatgttggtcacaccatcctgag
ctgggttttgcccatttactcgctggtaaattatgtattgttagaaaatc
ttagttttagatgtaggaactgtttataaactcaacttctcaagcagctt
tgcagcatctgtccattgtcaagaagcaatgcttctttagctcctgggac
cagctggtgggagagtagtaaaagccaaagcaggctcttttcatagaacg
aaagttcagcgaaaacaacatccagactcttgaaactgctaagctgtaag
actctaatttttaaagacactgtgtttctgtttctattcctaataaaaaa
ggaataacggctgattgagagctcagtcactaaaaaattgtcttgtaacg
cagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_114434292_114435421
seq2: B6Ng01-217A11.b_46_1152

seq1  GAATTCACTGTGATACACTATCCAGGAATCAGTAAATGTACATTAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGATACACTATCCAGGAATCAGTAAATGTACATTAAAATG  50

seq1  TAACATCTGAAAAAAATGCAATATAAGCCAACTACATGATCTCAGAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCTGAAAAAAATGCAATATAAGCCAACTACATGATCTCAGAAAAA  100

seq1  CTAACATAATCATATTTATTTCATAAGATATGACTAGTCTTTTATATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATAATCATATTTATTTCATAAGATATGACTAGTCTTTTATATGTT  150

seq1  AACATCTAAAACCTGAACTACATTTTCTATCTCCATAAATATAATGAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTAAAACCTGAACTACATTTTCTATCTCCATAAATATAATGAATC  200

seq1  CTACCATCAAAAATATCACCATATGGAATTCACTATTTTTATCCAATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATCAAAAATATCACCATATGGAATTCACTATTTTTATCCAATGTT  250

seq1  TAAGAAATAGAAGGCAGTTAAGATAATATAAAACCAGTCTGCTAGACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAATAGAAGGCAGTTAAGATAATATAAAACCAGTCTGCTAGACATG  300

seq1  CAATAGATTTCTCTCTGGGAAGTTATTATAGTGTTATTTTCATATAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGATTTCTCTCTGGGAAGTTATTATAGTGTTATTTTCATATAATTC  350

seq1  AGCCACTGATTGGTATAATACTATTATATTCATGTACTTCTACTGTAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTGATTGGTATAATACTATTATATTCATGTACTTCTACTGTAGGG  400

seq1  ATGCATGAGTTTTAAAAAGTATAAAATCATGTAAAACATAACAATATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGAGTTTTAAAAAGTATAAAATCATGTAAAACATAACAATATCTT  450

seq1  CTTTACAAAACCTATCTACAACATATTCAAATGAGATGTGTTAATGTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAAAACCTATCTACAACATATTCAAATGAGATGTGTTAATGTCCT  500

seq1  TATGCATATTTTCCATTAATATGACCTATTCATATTCTATAAAGATTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATATTTTCCATTAATATGACCTATTCATATTCTATAAAGATTTGA  550

seq1  AATATTAAAAAGAAATTCATATGTATAAAATTAACTCAATAACATATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAAAAAGAAATTCATATGTATAAAATTAACTCAATAACATATTTG  600

seq1  TTAGTTTTAAAAATAGTATTCTTCAATGACTTTTTTGTTATTGAACTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTAAAAATAGTATTCTTCAATGACTTTTTTGTTATTGAACTATT  650

seq1  ATACCTAGCCTAAGAAATCCAGAAGACTTCCTCAAAATATTGTTTTTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTAGCCTAAGAAATCCAGAAGACTTCCTCAAAATATTGTTTTTACT  700

seq1  AGAAAACCTTTATTGCAATCTATTTTGTATAATCGCTATTTGTTGCAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACCTTTATTGCAATCTATTTTGTATAATCGCTATTTGTTGCAATC  750

seq1  ATGTTTTCTATTTAGTTTGCTAAAAAGGCCTCTTTTTTCTTTGTCTGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCTATTTAGTTTGCTAAAAAGGCCTCTTTTTTCTTTGTCTGTGA  800

seq1  TATTTTTGCATTTCAAGAGAATAATCTAAACACTGTATATACTTTTCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGCATTTCAAGAGAATAATCTAAACACTGTATATACTTTTCCCT  850

seq1  GAGTCTTGTTTACAGTGGAGGGCTGGAAATCTTCAAGCTGACTTCTCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTGTTTACAGTGGAGGGCTGGAAATCTTCAAGCTGACTTCTCCTG  900

seq1  TTTATATGTATCAAAACAAAGTTGTCTACCTCATAGGGTTGATAAATTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGTATCAAAACAAAGTTGTCTACCTCATAGGGTTGATAAATTCA  950

seq1  TGCACTCACGAAGAGTGGTTGGCTGCAGAAAATTTACAGATGATCAAGCA  1000
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  TGCACTCACGAAGAGT-GTTGGCTGCAG-AAATTTACAGATGATCAAGCA  998

seq1  AGTCAAGATTCAGCATGAGGCCGCCAAAGACCATTCCATACCT-GAGGAG  1049
      |||| ||||||||||||||  |||  |||| |||| ||||||| ||||||
seq2  AGTC-AGATTCAGCATGAG--CGC--AAGA-CATT-CATACCTGGAGGAG  1041

seq1  CCATTGGCAGTTCATGGTTGCCGAGTAGGGATGGTCACTTAACTGATTTC  1099
      |||||||||| |||||  || |||||| |||||||||||| ||||||   
seq2  CCATTGGCAG-TCATG--TG-CGAGTA-GGATGGTCACTT-ACTGAT---  1082

seq1  CCTCTTTGGGGAAATAACCAAAATAAAACAG  1130
      ||||||   || ||||    |||||||||||
seq2  CCTCTT---GGGAATA---CAAATAAAACAG  1107


seq1: chr14_114566112_114567217
seq2: B6Ng01-217A11.g_64_1168 (reverse)

seq1  TTCTGCGTTACAAGACAAATGTTTTAGTGACTGAGCTCTCAACCCAGCCG  50
      |||||||||||||||| ||| |||||||||||||||||||||  ||||||
seq2  TTCTGCGTTACAAGAC-AATTTTTTAGTGACTGAGCTCTCAA-TCAGCCG  48

seq1  TTATTCCTTTTTTATAAGAAATAGAAAACAAGAAAACACAGTGTCTTTAA  100
      ||||||||||||||| || ||||| |||||   |||||||||||||||||
seq2  TTATTCCTTTTTTATTAGGAATAG-AAACA--GAAACACAGTGTCTTTAA  95

seq1  AAATT-GAGTCTACCAGCTAAGCAGTTTCAAGAGTCTGGATG-TGTTTTC  148
      ||||| ||||||  ||||| |||||||||||||||||||||| |||||||
seq2  AAATTAGAGTCTTACAGCTTAGCAGTTTCAAGAGTCTGGATGTTGTTTTC  145

seq1  GCTGAACTTTCGTTCTATGGAAAAGAGCCTGCTTTGGCTTGTACTACTCT  198
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  GCTGAACTTTCGTTCTAT-GAAAAGAGCCTGCTTTGGCTTTTACTACTCT  194

seq1  CCCA-CAGCTGGTCCCAGGAGCTAAAGAAGCATTGCTTCTTGACAATGGA  247
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCAGCTGGTCCCAGGAGCTAAAGAAGCATTGCTTCTTGACAATGGA  244

seq1  CAGATGCTGCAAAGCTGC-TGAGAAGTTGAG-TTATAAACAGTTCCTACA  295
      |||||||||||||||||| |||||||||||| ||||||||||||||||||
seq2  CAGATGCTGCAAAGCTGCTTGAGAAGTTGAGTTTATAAACAGTTCCTACA  294

seq1  TCTAAAACTAAGATTTTCTAACAATACATAATTTACCAGCGAGTAAATGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAACTAAGATTTTCTAACAATACATAATTTACCAGCGAGTAAATGG  344

seq1  GCAAAACCCAGCTCAGGATGGTGTGACCAACATGGTACATTCATCGTGCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACCCAGCTCAGGATGGTGTGACCAACATGGTACATTCATCGTGCA  394

seq1  TTTTACCAAATAACTACTTCTGAGTTTCAATAATTAATACACTATGGATT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCAAATAACTACTTCTGAGTTTCAATAATTAATACACTATGGATT  444

seq1  CTTTGAACATTTTAAACAACACACCTTTTGTGTCCCTTATTAAATTCCAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAACATTTTAAACAACACACCTTTTGTGTCCCTTATTAAATTCCAG  494

seq1  ACCTTCTTTCTCCAAAGAGGTTTTCATTGTCTCCTTTACATGAAAAATAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTTTCTCCAAAGAGGTTTTCATTGTCTCCTTTACATGAAAAATAT  544

seq1  CACACTAACATTATATCAAGTATCTCTAATATAATATATAAAAATACATT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTAACATTATATCAAGTATCTCTAATATAATATATAAAAATACATT  594

seq1  CTATCAATTTTTATCATCAGGTTTCTTGATTCTTTTCTATATTGAAATGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAATTTTTATCATCAGGTTTCTTGATTCTTTTCTATATTGAAATGG  644

seq1  CTACATATGAGACCATTTTAACATCTAATATAGGATATTATATAGGTTCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATATGAGACCATTTTAACATCTAATATAGGATATTATATAGGTTCT  694

seq1  TGGGTGAAACATGAGTTTTGATAAGCAGTTGTGTCTGGCTTTGTGCTCAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGAAACATGAGTTTTGATAAGCAGTTGTGTCTGGCTTTGTGCTCAC  744

seq1  AAAATAAACCAGGCTAACTAGCCACAAGATTATGGAAATCCATTATTTCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAACCAGGCTAACTAGCCACAAGATTATGGAAATCCATTATTTCT  794

seq1  TCTTCCTCCATGTGTTCTTTGAATAATTAAAAGAATATATGAAAGGAAGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCCATGTGTTCTTTGAATAATTAAAAGAATATATGAAAGGAAGC  844

seq1  CTCCAAAGACTCTTCATAACCATGGGTTAACAGTCAAGATAGCGTGGCCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAGACTCTTCATAACCATGGGTTAACAGTCAAGATAGCGTGGCCT  894

seq1  GGAGGGCTGCCCAATTGGAGCTAGGAGCAGCTCAGATGAAACTTAGTAAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCTGCCCAATTGGAGCTAGGAGCAGCTCAGATGAAACTTAGTAAT  944

seq1  AACTTGGGGTTATCGATAGGAAAGTAGATTCCAATAGCATGAAGGCTAGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGGGTTATCGATAGGAAAGTAGATTCCAATAGCATGAAGGCTAGG  994

seq1  TATCTGTCCAGCTTTTGTACTGCTTAAGGCTTATTAAAAATATAATGGCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTCCAGCTTTTGTACTGCTTAAGGCTTATTAAAAATATAATGGCT  1044

seq1  GTGTGTGTGTCTTGTCTGGGAACTATGAACAAGGCAGGGTAGAAACCATG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTCTTGTCTGGGAACTATGAACAAGGCAGGGTAGAAACCATG  1094

seq1  GTCTGGAATTC  1106
      |||||||||||
seq2  GTCTGGAATTC  1105


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