BAC Information

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BAC

Clone NameB6Ng01-217B08
Chromosome14 (Build37)
Map Location 111,720,506 - 111,854,035
singlet/doubletdoublet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217B08.bB6Ng01-217B08.g
ACCGA033600GA033601
length1,1611,128
definitionB6Ng01-217B08.b B6Ng01-217B08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,852,882 - 111,854,035)(111,720,506 - 111,721,618)
sequence
gaattcaactgagctgaactgtactcaactgaactgcaaggaactgaagt
gaactctcccttcgctgctcttaggtaccctctcattcctgactaacggt
catattttatttctgacacatactgtcacatctctttcttattcatcact
tcttcttccccttctacaagctaaacttaccttcattgcttaggatccta
agcaatgtgtcctaaggctatgtctgtagtctactaactaaatttaccta
cattgctttgtgtcctaatacagacatctgcattccatccagaatggtta
aaggtgtattctaagggcatatcttaattccagccagaaggattaaaggt
cggtcatccagcctgatcccacagacccagaaggcttttgtgtgtgatcc
cttgccagagcaaccatgttgctggattaacattcctccacctgattcat
caaggtttttttttttttttttttttgtattttcatttctttttgcactg
aaaatactgccaagtctatgctgaaaccttggcatcttcagaggtagttt
tgtgcatgtatgtacagttttgtacatattggtttctaaactcttcaata
tttaacatcacatttttgctttaattatagaaaatagtctcattttttgc
ccttaacacaacccactttgtatcacaaacagaataacttttctaaataa
cataagttttttagtcacctcaaaatgactttgataaacacccactattt
ttcaaccatcactaatttcaaaaattgatatagatttgttcagaaaggct
ttatacatgttaaaacaagaaagcatgatcttgtgtgaaggtaatttcgt
tactttagataaaccactgagttcccaatagtcacatggattatcttctt
caagaagtgcttccaaattgggaaggaaatgagtctttgatgagagaatg
tgggtgatgggacggtgggaagaaagcctggaaagtggtactggttgacc
ctcagtaacccggaaaagacagtagggagcttcgctacctcccttgctcc
agaccctgtcatgtagccacattctcctagaaagaaattgtgcccatata
gtcacactaaggagatttctgcaagtgctctccacactggagaatgaatg
cacattcctag

gaattcactttaattacaaagtcctagaaggtgacttacaatattatctt
ctgctgctttatatctacattggaaggttgttgttagggtagtcagctgt
atcagtttctcccttagcacctgattcacaacaaactcttaggttatgga
gacatttacgcctttctatcaaagtttattaactcatttctctgcaactt
aagctttttgagccttccttaacttttaaatgattcatagaataaagagc
ctttaaaagtaacacattgacaaattgttctctaaagaggacagactttc
ggtttaaatatatgtttccataaagtctaattattcctagtatattttat
tcaaaatgagaataaatagctatttaggttgtaaaatttgatattattat
agaataatttataatactttcttttcttatagaataagaaactctaagga
taagagtgtggataggaaaacagatgaacacacacaaataggtatctctt
tggttcactatttaatgggtttttgtttcagaatgaatcaaatatcacta
aatccagattaccttagttctacaactgtgaatgggcatcatgatcatct
tatttttctatgtatctgtctttattttctctttttctttatgtttaaca
tacaactaagtatatatcaaaagacaaagtaggataatttaaggaatatc
acaatgaagaggtttagaatagctactgtaatcttccacagtagagaaaa
gtaagatacttgccactatactgtaatgaaatatgctcaacaacatgtag
ggtttcagatacacagggagtagaaaggagagaaaataaatccatgtcct
tctggatcgacaggtagcttatctgttaacatgaaagacaaatttcactt
atcatttccaccccataagagtgaccacttgcctaaggtgttttatagta
gcttatcttgtagaacagcaaggatgtacttgtgtttatcacggaaggct
atgtgtttatgggacatagaggattaagcttgtcctttaataaaacaaaa
ctgaatccacctaagaaaacattagcgcaggaaaggtgtgacttgcaggt
caaggttttaagaatttatctccttatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_111852882_111854035
seq2: B6Ng01-217B08.b_47_1207 (reverse)

seq1  CTAGGAA--TGCA-TCA-TCTCCA-TGTGGA-AGCACTTGCAGAAACTCC  44
      |||||||  |||| ||| |||||| |||||| |||||||||||||| || 
seq2  CTAGGAATGTGCATTCATTCTCCAGTGTGGAGAGCACTTGCAGAAA-TCT  49

seq1  CCCTA-TGTGACTA-ATGGGCACAA-TTCTTTCTATGGGAGAATGTGGCT  91
      || || |||||||| |||||||||| |||||||||  |||||||||||||
seq2  CCTTAGTGTGACTATATGGGCACAATTTCTTTCTA--GGAGAATGTGGCT  97

seq1  ACATGACAGGGGTCTGGAGC-AGGGA-GTAGCGAAGCT-CCTACTGTCTT  138
      |||||||| ||||||||||| ||||| ||||||||||| |||||||||||
seq2  ACATGACA-GGGTCTGGAGCAAGGGAGGTAGCGAAGCTCCCTACTGTCTT  146

seq1  TTCCGGG-TACTGAGGGTTCAAACCCAGTACAACCTTCCCAGGC-TTCTT  186
      ||||||| ||||||||| ||||  ||||||| | ||| |||||| |||||
seq2  TTCCGGGTTACTGAGGG-TCAA--CCAGTACCA-CTTTCCAGGCTTTCTT  192

seq1  CCCACCGT-CCATCACCCCACATTCTCTCATCAAAGACTCATTTCCTTCC  235
      |||||||| |||||| ||||||||||||||||||||||||||||||||||
seq2  CCCACCGTCCCATCA-CCCACATTCTCTCATCAAAGACTCATTTCCTTCC  241

seq1  CAATTTGGAAGCAC-TCTTGAAGAAGATAATCCATGTGACTATTGGGAAC  284
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAATTTGGAAGCACTTCTTGAAGAAGATAATCCATGTGACTATTGGGAAC  291

seq1  TCAGTGGTTTATCTAAAGTAACGAAATTACCTTCACACAAGATCATGCTT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGTTTATCTAAAGTAACGAAATTACCTTCACACAAGATCATGCTT  341

seq1  TCTTGTTTTAACATGTATAAAGCCTTTCTGAACAAATCTATATCAATTTT  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTTAACATGTATAAAGCCTTTCTGAACAAATCTATATCAATTTT  391

seq1  TGAAATTAGTGATGGTTGAAAAATAGTGGGTGTTTATCAAAGTCATTTTG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTAGTGATGGTTGAAAAATAGTGGGTGTTTATCAAAGTCATTTTG  441

seq1  AGGTGACTAAAAAACTTATGTTATTTAGAAAAGTTATTCTGTTTGTGATA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACTAAAAAACTTATGTTATTTAGAAAAGTTATTCTGTTTGTGATA  491

seq1  CAAAGTGGGTTGTGTTAAGGGCAAAAAATGAGACTATTTTCTATAATTAA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGGGTTGTGTTAAGGGCAAAAAATGAGACTATTTTCTATAATTAA  541

seq1  AGCAAAAATGTGATGTTAAATATTGAAGAGTTTAGAAACCAATATGTACA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAATGTGATGTTAAATATTGAAGAGTTTAGAAACCAATATGTACA  591

seq1  AAACTGTACATACATGCACAAAACTACCTCTGAAGATGCCAAGGTTTCAG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTACATACATGCACAAAACTACCTCTGAAGATGCCAAGGTTTCAG  641

seq1  CATAGACTTGGCAGTATTTTCAGTGCAAAAAGAAATGAAAATACAAAAAA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACTTGGCAGTATTTTCAGTGCAAAAAGAAATGAAAATACAAAAAA  691

seq1  AAAAAAAAAAAAAAACCTTGATGAATCAGGTGGAGGAATGTTAATCCAGC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAACCTTGATGAATCAGGTGGAGGAATGTTAATCCAGC  741

seq1  AACATGGTTGCTCTGGCAAGGGATCACACACAAAAGCCTTCTGGGTCTGT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGTTGCTCTGGCAAGGGATCACACACAAAAGCCTTCTGGGTCTGT  791

seq1  GGGATCAGGCTGGATGACCGACCTTTAATCCTTCTGGCTGGAATTAAGAT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCAGGCTGGATGACCGACCTTTAATCCTTCTGGCTGGAATTAAGAT  841

seq1  ATGCCCTTAGAATACACCTTTAACCATTCTGGATGGAATGCAGATGTCTG  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTTAGAATACACCTTTAACCATTCTGGATGGAATGCAGATGTCTG  891

seq1  TATTAGGACACAAAGCAATGTAGGTAAATTTAGTTAGTAGACTACAGACA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGACACAAAGCAATGTAGGTAAATTTAGTTAGTAGACTACAGACA  941

seq1  TAGCCTTAGGACACATTGCTTAGGATCCTAAGCAATGAAGGTAAGTTTAG  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTAGGACACATTGCTTAGGATCCTAAGCAATGAAGGTAAGTTTAG  991

seq1  CTTGTAGAAGGGGAAGAAGAAGTGATGAATAAGAAAGAGATGTGACAGTA  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAGAAGGGGAAGAAGAAGTGATGAATAAGAAAGAGATGTGACAGTA  1041

seq1  TGTGTCAGAAATAAAATATGACCGTTAGTCAGGAATGAGAGGGTACCTAA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCAGAAATAAAATATGACCGTTAGTCAGGAATGAGAGGGTACCTAA  1091

seq1  GAGCAGCGAAGGGAGAGTTCACTTCAGTTCCTTGCAGTTCAGTTGAGTAC  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCGAAGGGAGAGTTCACTTCAGTTCCTTGCAGTTCAGTTGAGTAC  1141

seq1  AGTTCAGCTCAGTTGAATTC  1154
      ||||||||||||||||||||
seq2  AGTTCAGCTCAGTTGAATTC  1161


seq1: chr14_111720506_111721618
seq2: B6Ng01-217B08.g_65_1192

seq1  GAATTCACTTTAATTACAAAGTCCTAGAAGGTGACTTACAATATTATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTAATTACAAAGTCCTAGAAGGTGACTTACAATATTATCTT  50

seq1  CTGCTGCTTTATATCTACATTGGAAGGTTGTTGTTAGGGTAGTCAGCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTTTATATCTACATTGGAAGGTTGTTGTTAGGGTAGTCAGCTGT  100

seq1  ATCAGTTTCTCCCTTAGCACCTGATTCACAACAAACTCTTAGGTTATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTTCTCCCTTAGCACCTGATTCACAACAAACTCTTAGGTTATGGA  150

seq1  GACATTTACGCCTTTCTATCAAAGTTTATTAACTCATTTCTCTGCAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTACGCCTTTCTATCAAAGTTTATTAACTCATTTCTCTGCAACTT  200

seq1  AAGCTTTTTGAGCCTTCCTTAACTTTTAAATGATTCATAGAATAAAGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTTTGAGCCTTCCTTAACTTTTAAATGATTCATAGAATAAAGAGC  250

seq1  CTTTAAAAGTAACACATTGACAAATTGTTCTCTAAAGAGGACAGACTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAGTAACACATTGACAAATTGTTCTCTAAAGAGGACAGACTTTC  300

seq1  GGTTTAAATATATGTTTCCATAAAGTCTAATTATTCCTAGTATATTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAAATATATGTTTCCATAAAGTCTAATTATTCCTAGTATATTTTAT  350

seq1  TCAAAATGAGAATAAATAGCTATTTAGGTTGTAAAATTTGATATTATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATGAGAATAAATAGCTATTTAGGTTGTAAAATTTGATATTATTAT  400

seq1  AGAATAATTTATAATACTTTCTTTTCTTATAGAATAAGAAACTCTAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAATTTATAATACTTTCTTTTCTTATAGAATAAGAAACTCTAAGGA  450

seq1  TAAGAGTGTGGATAGGAAAACAGATGAACACACACAAATAGGTATCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTGTGGATAGGAAAACAGATGAACACACACAAATAGGTATCTCTT  500

seq1  TGGTTCACTATTTAATGGGTTTTTGTTTCAGAATGAATCAAATATCACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCACTATTTAATGGGTTTTTGTTTCAGAATGAATCAAATATCACTA  550

seq1  AATCCAGATTACCTTAGTTCTACAACTGTGAATGGGCATCATGATCATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGATTACCTTAGTTCTACAACTGTGAATGGGCATCATGATCATCT  600

seq1  TATTTTTCTATGTATCTGTCTTTATTTTCTCTTTTTCTTTATGTTTAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCTATGTATCTGTCTTTATTTTCTCTTTTTCTTTATGTTTAACA  650

seq1  TACAACTAAGTATATATCAAAAGACAAAGTAGGATAATTTAAGGAATATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACTAAGTATATATCAAAAGACAAAGTAGGATAATTTAAGGAATATC  700

seq1  ACAATGAAGAGGTTTAGAATAGCTACTGTAATCTTCCACAGTAGAGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAAGAGGTTTAGAATAGCTACTGTAATCTTCCACAGTAGAGAAAA  750

seq1  GTAAGATACTTGCCACTATACTGTAATGAAATATGCTCAACAACATGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATACTTGCCACTATACTGTAATGAAATATGCTCAACAACATGTAG  800

seq1  GGTTTCAGATACACAGGGAGTAG-AAGGAGAGAAAATAAATCCATGTCCT  849
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGTTTCAGATACACAGGGAGTAGAAAGGAGAGAAAATAAATCCATGTCCT  850

seq1  TCTGGATCGACAGGTAGCTTATCTGTTAACATGAAAGACAAA-TTCACTT  898
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCTGGATCGACAGGTAGCTTATCTGTTAACATGAAAGACAAATTTCACTT  900

seq1  ATCAATTCCACCCCATAAGAGTGACCACCTG-CTAAGGTG-TTTATAGTA  946
      |||| ||||||||||||||||||||||| || |||||||| |||||||||
seq2  ATCATTTCCACCCCATAAGAGTGACCACTTGCCTAAGGTGTTTTATAGTA  950

seq1  GC-TATC-TGTAGAACAGCAAAGAATGTAC-TGTGTTAATCACGGAAGGC  993
      || |||| ||||||||||| ||| |||||| |||||| ||||||||||||
seq2  GCTTATCTTGTAGAACAGC-AAGGATGTACTTGTGTTTATCACGGAAGGC  999

seq1  TATGTGTTTATGGGACATAGAGGATAAAGC-TGTCTTTTAATAAAACAAA  1042
      ||||||||||||||||||||||||| |||| |||| ||||||||||||||
seq2  TATGTGTTTATGGGACATAGAGGATTAAGCTTGTCCTTTAATAAAACAAA  1049

seq1  ACTG-ATACAACTAAG-AAACATTAGCG-AG--AAAGTGTGAC-TGCAGG  1086
      |||| || || ||||| ||||||||||| ||  || ||||||| ||||||
seq2  ACTGAATCCACCTAAGAAAACATTAGCGCAGGAAAGGTGTGACTTGCAGG  1099

seq1  TACAAGTTTTTAAGA--TTATCT-CTTATC  1113
      | |||| ||||||||  |||||| ||||||
seq2  T-CAAGGTTTTAAGAATTTATCTCCTTATC  1128


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