BAC Information

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BAC

Clone NameB6Ng01-217F21
Chromosome14 (Build37)
Map Location 17,589,410 - 17,590,554
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667205, 1700062C10Rik, LOC667209, EG435389, Oxsm, Ngly1, Top2b, Rarb
Downstream geneTpi-rs9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217F21.bB6Ng01-217F21.g
ACCGA033796GA033797
length1,1421,190
definitionB6Ng01-217F21.b B6Ng01-217F21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacctaattattttcctggaatgtatccattaaagtataaatgtt
ctttgcagatatgaggatacccacacttaaatcggtgaatgtctgcccga
ttgctctctaagacccatcatttccccactttctgtttcccaatgtttcc
ataacaaacatccacaagcttgctgccttaaaacatacaaatttgatatt
tgtgtaagtatgtctgtatgtgtaagcctgtgcttgagtgtatgtaaatg
tgggcacccacatctcatgacacacttgtagaggtcagagaacaacttca
gctgtccatactccccttcttcattatttgagacaggatttttttgttat
tcttcattaaatacaccaggctagctggccatgacattctgtggattctt
ctgtctctgtctcctatctcacagtgagtacactggaattattttgtgct
gctgtgtctgaatttatgtaggttctggggatttgaactcaggtctttgt
gctcaagcacttcaccaatgtcttccctactcacatgttcacatgttatc
ttacagttacaggggttagtaattgaaaatgagtatgactaagttaaatt
aaaatatcatcaggacaaggtccttgccttagcctctttgttttatctaa
cttgaggaggttgtccaaggtccttggcttatatccccaagccttttgtt
aaagccagcaattttcctgttccagcaatacatacctgtaatcctgccat
gaatgaatgagacagaagcactgtgggccctgactccatctgggatcata
cctcgttccaggaaagggcagcctggagtacccagaaagtacttgtctag
aagaaaagagaaagtcggcaatactgggctcagtgttccttatacagcca
cctctttagtaacttcctgtgcctcttccatccttgaagggccccatatt
aaaatggactaagctgcaaaacttagtgtagctgtaattagcaatcttca
ttatgtctgaagctatgtatctatgtactatgtaaacacaggttgggttt
tgaacctggacacttaggatgctacttgacagaactggggttcttatatg
gttctaacttaaagtaaaaatatttatttcaattatgttttg
gaattccaggtgcagaagattccatagggaacatggacacaacaatctaa
gaaaatgcaaaatgcaaaaagatcctaacccaaaacatctagaatattca
ggacacaatgagaagaccaaacctacagatagtagaagtagatgagaatg
aagattttcaacttaaagggccagcaaatatcttcaacaaaattatagaa
gaaaacttcccatacctaaagaaagagatgcccaagaacattcaagaagt
ctacagaactccaaatagactggaccagaaaagaaattcctcccgacaca
taataatcagaaaaacaaatgcattaaataaagacagaatattaaaagca
gtaagggaaaaaggtcaagtaacatataaaggcaggcctattagaattac
tccagacttctcaccagagaatatgaaagtcagaagatcttggacagatg
ttatccagacattaagagaacacaaatgccagcctaggctactataccca
gcaaaactctcaattactatagatggagaaaccaaagtattccatgacaa
aaccaaattcacacaatatctttccacaaatctaccccttcaaaggataa
aaagggaaaacaccaacacaaagatggaaattacaccctagaaaaagcaa
agaaagtaatcctttaacaaaactaaaagaagacagccagacagccacaa
gaacagatttccaacttaaacaacaaaaatgagaggaaacaccaattact
tttctttgatttctcttaacatcaatggactcagttacccaataaaaaga
ctggctacacaaatcagacccaacattttggtgcttacaggaaacccacc
tcaggataaagacagacactacctcagaaaaggctggaaaacaattttac
aggaaaatagtccaaagaaacaagctgaagtagccattataatatcgaat
aaaattggcttccaaccaaagttatcaaaaagcaaggtggggcactttca
taatcatcaagttaaatctaccaggatgactctattctaatatctatgct
caaatgctagggccagcacattcataaagaaacttagttaactcgaggca
cacatgcacctcaacaataatagtgggaactcaacaccccaatctacatt
ggaacagattcctggtaaaccgtataccttataaccgtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_17589410_17590554
seq2: B6Ng01-217F21.b_45_1186 (reverse)

seq1  CAAAACATAA-TGAAATAAATATTTTTACTTTAAGTTTAGAA-CATATAG  48
      |||||||||| |||||||||||||||||||||||| |||||| |||||| 
seq2  CAAAACATAATTGAAATAAATATTTTTACTTTAAG-TTAGAACCATATAA  49

seq1  AACCCCCAGTCCTGTCAAGTAGCATCCTAAGTTGTCAAGGTTCCAATACC  98
       | ||||||| |||||||||||||||||||| |||| ||||| ||| |||
seq2  GAACCCCAGTTCTGTCAAGTAGCATCCTAAG-TGTCCAGGTT-CAAAACC  97

seq1  CAAACCTGTGTTTTACATAGTACATAGATACATAGCTTCAGACATAATGA  148
      | |||||||| |||||||||||||||||||||||||||||||||||||||
seq2  C-AACCTGTG-TTTACATAGTACATAGATACATAGCTTCAGACATAATGA  145

seq1  AGATTGCTAATTACAGCTACACTAAGTTTTGCAGCTTAGTCCATTTTTAA  198
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGATTGCTAATTACAGCTACACTAAGTTTTGCAGCTTAGTCCA-TTTTAA  194

seq1  TATGGGGCCCTTCAA-GATGGAAGAGGCACAGGAAGTTACTAAAGAGGTG  247
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATGGGGCCCTTCAAGGATGGAAGAGGCACAGGAAGTTACTAAAGAGGTG  244

seq1  GCTGTATAAGGAACACTGAGCCCAGTATTGCCGACTTTCTCTTTTCTTCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATAAGGAACACTGAGCCCAGTATTGCCGACTTTCTCTTTTCTTCT  294

seq1  AGACAAGTACTTTCTGGGTACTCCAGGCTGCCCTTTCCTGGAACGAGGTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGTACTTTCTGGGTACTCCAGGCTGCCCTTTCCTGGAACGAGGTA  344

seq1  TGATCCCAGATGGAGTCAGGGCCCACAGTGCTTCTGTCTCATTCATTCAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCAGATGGAGTCAGGGCCCACAGTGCTTCTGTCTCATTCATTCAT  394

seq1  GGCAGGATTACAGGTATGTATTGCTGGAACAGGAAAATTGCTGGCTTTAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGATTACAGGTATGTATTGCTGGAACAGGAAAATTGCTGGCTTTAA  444

seq1  CAAAAGGCTTGGGGATATAAGCCAAGGACCTTGGACAACCTCCTCAAGTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGCTTGGGGATATAAGCCAAGGACCTTGGACAACCTCCTCAAGTT  494

seq1  AGATAAAACAAAGAGGCTAAGGCAAGGACCTTGTCCTGATGATATTTTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAACAAAGAGGCTAAGGCAAGGACCTTGTCCTGATGATATTTTAA  544

seq1  TTTAACTTAGTCATACTCATTTTCAATTACTAACCCCTGTAACTGTAAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTTAGTCATACTCATTTTCAATTACTAACCCCTGTAACTGTAAGA  594

seq1  TAACATGTGAACATGTGAGTAGGGAAGACATTGGTGAAGTGCTTGAGCAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGTGAACATGTGAGTAGGGAAGACATTGGTGAAGTGCTTGAGCAC  644

seq1  AAAGACCTGAGTTCAAATCCCCAGAACCTACATAAATTCAGACACAGCAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCTGAGTTCAAATCCCCAGAACCTACATAAATTCAGACACAGCAG  694

seq1  CACAAAATAATTCCAGTGTACTCACTGTGAGATAGGAGACAGAGACAGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAATAATTCCAGTGTACTCACTGTGAGATAGGAGACAGAGACAGAA  744

seq1  GAATCCACAGAATGTCATGGCCAGCTAGCCTGGTGTATTTAATGAAGAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCACAGAATGTCATGGCCAGCTAGCCTGGTGTATTTAATGAAGAAT  794

seq1  AACAAAAAAATCCTGTCTCAAATAATGAAGAAGGGGAGTATGGACAGCTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAAATCCTGTCTCAAATAATGAAGAAGGGGAGTATGGACAGCTG  844

seq1  AAGTTGTTCTCTGACCTCTACAAGTGTGTCATGAGATGTGGGTGCCCACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTTCTCTGACCTCTACAAGTGTGTCATGAGATGTGGGTGCCCACA  894

seq1  TTTACATACACTCAAGCACAGGCTTACACATACAGACATACTTACACAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATACACTCAAGCACAGGCTTACACATACAGACATACTTACACAAA  944

seq1  TATCAAATTTGTATGTTTTAAGGCAGCAAGCTTGTGGATGTTTGTTATGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAATTTGTATGTTTTAAGGCAGCAAGCTTGTGGATGTTTGTTATGG  994

seq1  AAACATTGGGAAACAGAAAGTGGGGAAATGATGGGTCTTAGAGAGCAATC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTGGGAAACAGAAAGTGGGGAAATGATGGGTCTTAGAGAGCAATC  1044

seq1  GGGCAGACATTCACCGATTTAAGTGTGGGTATCCTCATATCTGCAAAGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGACATTCACCGATTTAAGTGTGGGTATCCTCATATCTGCAAAGAA  1094

seq1  CATTTATACTTTAATGGATACATTCCAGGAAAATAATTAGGTGAATTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATACTTTAATGGATACATTCCAGGAAAATAATTAGGTGAATTC  1142