BAC Information

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BAC

Clone NameB6Ng01-217M18
Chromosome14 (Build37)
Map Location 118,551,692 - 118,657,207
singlet/doubletdoublet
Overlap geneGpr180, LOC100043824, LOC100043539, Sox21, LOC100043825
Upstream geneGpc6, 5730405N03Rik, LOC100043822, Dct, Tgds
Downstream geneEG668814, LOC435422, Abcc4, Cldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2, Hs6st3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217M18.bB6Ng01-217M18.g
ACCGA034101GA034102
length1,123178
definitionB6Ng01-217M18.b B6Ng01-217M18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,551,692 - 118,552,813)(118,657,030 - 118,657,207)
sequence
gaattcagcagagtgtacgtccgtgggtgcagcagccacagaggaacagt
atcgtgtgaaaagtggtcagtactcagcacacggcacacggcacacaaca
tggtataatacctgtttatacagcatttatactgtactggggattgaaga
tcatctgcagatggtttggagttgtatagcagatatgcattggattttat
acataaataccatgcattttatttaaaggagttctgatgtctaagggctt
cctggtaccagtctcccttggcttgaaaagaaagactaacttaattcctt
aaactcaaaactatgaaattcccaagcttctaacttgaagtgtattagaa
ttttttttttttttgaaatttcacagatgaaaactcaagtcccagtctgc
ttattgtaaggtcccgtgggcactccaggagaccagtggcagagggcaca
tcatggcgtcttctgctgcattcttactcggttcttacctatgccaacag
tctcctttgctcatagcctctgcccactcagacgtcatcactgctgtgtg
actctggcctggtctaggtcccagctgcagctctcaaagcccaccttctg
tgtgcagccatttgacttctgaggggcagtatggctcatctaactttgtt
cttggctatttggattggtggctaattgtttgttgtcaaggttctttgcc
aaaatggaagtcaaggttaaactactggtgacaataaatgttgctggcgt
tctcgggacagccgtgcaccctgagcttacgaggtgtctcactgaacatt
gaagccacagctggctgctttcacgtgaaacacttttgattatcccgtga
gtcttcgtcctgccttgagggattttgttgtttcacgggctgactttacc
taggttgttttaagtgcctttcttaatagatcaagcttggacccaaaggc
gtgcgcatgggggaagggacagttagtaattccaatcttctcttccttac
atagcaaatgtgtcaagcactagaggaagaatgagaatgcatgacggaaa
gcgctgacgctgtcctgtttactgaagcagcccctcttcttcttcaaggg
ctccacgagttcttttcttcctc
cacttttttaaaaaagaaataaaccatactgtgctttttttttcaccctg
aggttcacagacatttgagtagtttcttctctaaattattatgaagaaaa
ctatcaggaatacacagtatttctgctaggcacacgcgtgtatgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_118551692_118552813
seq2: B6Ng01-217M18.b_49_1171

seq1  GAATTCAGCAGAGTGTACGTCCGTGGGTGCAGCAGCCACAGAGGAACAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGAGTGTACGTCCGTGGGTGCAGCAGCCACAGAGGAACAGT  50

seq1  ATCGTGTGAAAAGTGGTCAGTACTCAGCACACGGCACACGGCACACAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGTGAAAAGTGGTCAGTACTCAGCACACGGCACACGGCACACAACA  100

seq1  TGGTATAATACCTGTTTATACAGCATTTATACTGTACTGGGGATTGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATAATACCTGTTTATACAGCATTTATACTGTACTGGGGATTGAAGA  150

seq1  TCATCTGCAGATGGTTTGGAGTTGTATAGCAGATATGCATTGGATTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGCAGATGGTTTGGAGTTGTATAGCAGATATGCATTGGATTTTAT  200

seq1  ACATAAATACCATGCATTTTATTTAAAGGAGTTCTGATGTCTAAGGGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATACCATGCATTTTATTTAAAGGAGTTCTGATGTCTAAGGGCTT  250

seq1  CCTGGTACCAGTCTCCCTTGGCTTGAAAAGAAAGACTAACTTAATTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTACCAGTCTCCCTTGGCTTGAAAAGAAAGACTAACTTAATTCCTT  300

seq1  AAACTCAAAACTATGAAATTCCCAAGCTTCTAACTTGAAGTGTATTAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAAAACTATGAAATTCCCAAGCTTCTAACTTGAAGTGTATTAGAA  350

seq1  TTTTTTTTTTTTTTGAAATTTCACAGATGAAAACTCAAGTCCCAGTCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTGAAATTTCACAGATGAAAACTCAAGTCCCAGTCTGC  400

seq1  TTATTGTAAGGTCCCGTGGGCACTCCAGGAGACCAGTGGCAGAGGGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTAAGGTCCCGTGGGCACTCCAGGAGACCAGTGGCAGAGGGCACA  450

seq1  TCATGGCGTCTTCTGCTGCATTCTTACTCGGTTCTTACCTATGCCAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCGTCTTCTGCTGCATTCTTACTCGGTTCTTACCTATGCCAACAG  500

seq1  TCTCCTTTGCTCATAGCCTCTGCCCACTCAGACGTCATCACTGCTGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTGCTCATAGCCTCTGCCCACTCAGACGTCATCACTGCTGTGTG  550

seq1  ACTCTGGCCTGGTCTAGGTCCCAGCTGCAGCTCTCAAAGCCCACCTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGCCTGGTCTAGGTCCCAGCTGCAGCTCTCAAAGCCCACCTTCTG  600

seq1  TGTGCAGCCATTTGACTTCTGAGGGGCAGTATGGCTCATCTAACTTTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGCCATTTGACTTCTGAGGGGCAGTATGGCTCATCTAACTTTGTT  650

seq1  CTTGGCTATTTGGATTGGTGGCTAATTGTTTGTTGTCAAGGTTCTTTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTATTTGGATTGGTGGCTAATTGTTTGTTGTCAAGGTTCTTTGCC  700

seq1  AAAATGGAAGTCAAGGTTAAACTACTGGTGACAATAAATGTTGCTGGCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGAAGTCAAGGTTAAACTACTGGTGACAATAAATGTTGCTGGCGT  750

seq1  TCTCGGGACAGCCGTGCACCCTGAGCTTACGAGGTGTCTCACTGAACATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGGGACAGCCGTGCACCCTGAGCTTACGAGGTGTCTCACTGAACATT  800

seq1  GAAGCCACAGCTGGCTGCTTTCACGTGAAACACTTTTGATTATCCCGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCACAGCTGGCTGCTTTCACGTGAAACACTTTTGATTATCCCGTGA  850

seq1  GTCTTCGTCCTGCCTTGAGGGATTTTGTTGTTTCACGGGCTGACTTTACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCGTCCTGCCTTGAGGGATTTTGTTGTTTCACGGGCTGACTTTACC  900

seq1  TAGGTTGTTTTAAGTGCC-TTCTT-ATAGATCAAGCTTGGACCC-AAGGC  947
      |||||||||||||||||| ||||| ||||||||||||||||||| |||||
seq2  TAGGTTGTTTTAAGTGCCTTTCTTAATAGATCAAGCTTGGACCCAAAGGC  950

seq1  GTGCGCATGGGGAAGGGGACAGTTAGTAATTCCCATC-TCTCTTCCTTAC  996
      |||||||||||| | |||||||||||||||||| ||| ||||||||||||
seq2  GTGCGCATGGGGGAAGGGACAGTTAGTAATTCCAATCTTCTCTTCCTTAC  1000

seq1  ATAGCAAATGTGTTCAAGCACTAGAGG-AGAAGGAGAA-GCA-GACGGGA  1043
      |||||||||||| |||||||||||||| |||| ||||| ||| ||| |||
seq2  ATAGCAAATGTG-TCAAGCACTAGAGGAAGAATGAGAATGCATGAC-GGA  1048

seq1  AAGCCGCCTGACGCTGTCCTGTTTTACTGAAGCCAGCCCCCTCTCTTC-T  1092
      ||||   |||||||||||||| |||||||||| ||||||   |||||| |
seq2  AAGC--GCTGACGCTGTCCTG-TTTACTGAAG-CAGCCC---CTCTTCTT  1091

seq1  CTTCCAGGGCTCCACGAGTTCTTT--TTCCTC  1122
      |||| |||||||||||||||||||  ||||||
seq2  CTTCAAGGGCTCCACGAGTTCTTTTCTTCCTC  1123

seq1: chr14_118657030_118657207
seq2: B6Ng01-217M18.g_69_246 (reverse)

seq1  CACACACACACACACACACACACACACACACACACATACACGCGTGTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACATACACGCGTGTGCC  50

seq1  TAGCAGAAATACTGTGTATTCCTGATAGTTTTCTTCATAATAATTTAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAAATACTGTGTATTCCTGATAGTTTTCTTCATAATAATTTAGAG  100

seq1  AAGAAACTACTCAAATGTCTGTGAACCTCAGGGTGAAAAAAAAAGCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTACTCAAATGTCTGTGAACCTCAGGGTGAAAAAAAAAGCACAG  150

seq1  TATGGTTTATTTCTTTTTTAAAAAAGTG  178
      ||||||||||||||||||||||||||||
seq2  TATGGTTTATTTCTTTTTTAAAAAAGTG  178