BAC Information

Click to search

BAC

Clone NameB6Ng01-217P07
Chromosome14 (Build37)
Map Location 18,546,097 - 18,547,284
singlet/doubletsinglet
Overlap genenone
Upstream geneTpi-rs9
Downstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217P07.bB6Ng01-217P07.g
ACCGA034213GA034214
length1,198140
definitionB6Ng01-217P07.b B6Ng01-217P07.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
tgggataggtatggagtgcagctcctgtaaaggggagaaactgatggaaa
tgggagctgtttagatagtgcccagacccttatcctaggctcctgcacct
gctgcggcatctgcctgtatctgggagcagccctaggctgcagactggca
gattctttcgtatcatggctctgctcccttggctatgtgtgggaccatct
gagtgcatatcacttcagagctgtctggtgatcagcctaagatgttcacc
ccacaccactgctttcctttacctggccccagcctgctttcctcactccc
tcaggaatttccccaagagtctgacttgcatagcactagtcacttaggct
tctatcctggaggtacctgcttgagacaggttttgcttttattgggggag
tgtcttataactagtccttttctctggcagcagtttctcctttcccttcc
gaagtgggccaactagccattccttaatgctttattctgagatcctcctg
tcagcatcatctcagaagttgagaatttcttcttgtttcattcaaagtcc
tcttcggcagcattgaagagatgctcctctccctgcctcagtatcaggga
ttccacagcacttgtggactcaaattattcaagatcatgggtttacccat
atactcatacttgcacaaacacatgcataagcacatgtatgcatgcttgt
acacatctctttatttactctcccatggtgatggaaagattgatgccatg
ccccagctagcagtgttcctgggactctgcagaggaacatgaggtgtagt
cagcatccactttcttgctcctaatatctctttttctaccttatgtgcct
gttctttgtttctctatgcagacttccttctcacaggtcacatggctatc
aactgagtaaggtagcagtgggagaggaagtgacaaaacaaggtcctgag
gttagggctgggttcctggcttgggaatctagattgctgagctttgctct
gctctggagttcatctaagtattaccatgacctttaatcaatgtcatctg
tctggaatcaagtcctctttgcttggataagagactgagtacattccacc
atgggcccccaccttatgacaatcctcgtgtaaatggggtagaaacagtc
catctagtcatctagatggtgtcagttccttgagaaagcatggagaca

aaaagactcaacaagctgaagtgcccaagtgaggacacctcagtcccact
tgtgagagagaagaaagaaagcaatcacaagtaggaagggagggcttggg
agggaaagcagacagggtggaggggcagtgggggggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_18546097_18547284
seq2: B6Ng01-217P07.b_61_1258

seq1  TGGGATAGGTATGGAGTGCAGCTCCTGTAAAGGGGAGAAACTGATGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATAGGTATGGAGTGCAGCTCCTGTAAAGGGGAGAAACTGATGGAAA  50

seq1  TGGGAGCTGTTTAGATAGTGCCCAGACCCTTATCCTAGGCTCCTGCACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCTGTTTAGATAGTGCCCAGACCCTTATCCTAGGCTCCTGCACCT  100

seq1  GCTGCGGCATCTGCCTGTATCTGGGAGCAGCCCTAGGCTGCAGACTGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGGCATCTGCCTGTATCTGGGAGCAGCCCTAGGCTGCAGACTGGCA  150

seq1  GATTCTTTCGTATCATGGCTCTGCTCCCTTGGCTATGTGTGGGACCATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTCGTATCATGGCTCTGCTCCCTTGGCTATGTGTGGGACCATCT  200

seq1  GAGTGCATATCACTTCAGAGCTGTCTGGTGATCAGCCTAAGATGTTCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCATATCACTTCAGAGCTGTCTGGTGATCAGCCTAAGATGTTCACC  250

seq1  CCACACCACTGCTTTCCTTTACCTGGCCCCAGCCTGCTTTCCTCACTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCACTGCTTTCCTTTACCTGGCCCCAGCCTGCTTTCCTCACTCCC  300

seq1  TCAGGAATTTCCCCAAGAGTCTGACTTGCATAGCACTAGTCACTTAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAATTTCCCCAAGAGTCTGACTTGCATAGCACTAGTCACTTAGGCT  350

seq1  TCTATCCTGGAGGTACCTGCTTGAGACAGGTTTTGCTTTTATTGGGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCTGGAGGTACCTGCTTGAGACAGGTTTTGCTTTTATTGGGGGAG  400

seq1  TGTCTTATAACTAGTCCTTTTCTCTGGCAGCAGTTTCTCCTTTCCCTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTATAACTAGTCCTTTTCTCTGGCAGCAGTTTCTCCTTTCCCTTCC  450

seq1  GAAGTGGGCCAACTAGCCATTCCTTAATGCTTTATTCTGAGATCCTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGGCCAACTAGCCATTCCTTAATGCTTTATTCTGAGATCCTCCTG  500

seq1  TCAGCATCATCTCAGAAGTTGAGAATTTCTTCTTGTTTCATTCAAAGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATCATCTCAGAAGTTGAGAATTTCTTCTTGTTTCATTCAAAGTCC  550

seq1  TCTTCGGCAGCATTGAAGAGATGCTCCTCTCCCTGCCTCAGTATCAGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCGGCAGCATTGAAGAGATGCTCCTCTCCCTGCCTCAGTATCAGGGA  600

seq1  TTCCACAGCACTTGTGGACTCAAATTATTCAAGATCATGGGTTTACCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAGCACTTGTGGACTCAAATTATTCAAGATCATGGGTTTACCCAT  650

seq1  ATACTCATACTTGCACAAACACATGCATAAGCACATGTATGCATGCTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCATACTTGCACAAACACATGCATAAGCACATGTATGCATGCTTGT  700

seq1  ACACATCTCTTTATTTACTCTCCCATGGTGATGGAAAGATTGATGCCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCTCTTTATTTACTCTCCCATGGTGATGGAAAGATTGATGCCATG  750

seq1  CCCCAGCTAGCAGTGTTCCTGGGACTCTGCAGAGGAACATGAGGTGTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCTAGCAGTGTTCCTGGGACTCTGCAGAGGAACATGAGGTGTAGT  800

seq1  CAGCATCCACTTTCTTGCTCCTAATATCTCTTTTTCTACCTTATGTGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCCACTTTCTTGCTCCTAATATCTCTTTTTCTACCTTATGTGCCT  850

seq1  GTTCTTTGTTTCTCTATGCAGACTTCCTTCTCACAGGTCACATGGCTATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTGTTTCTCTATGCAGACTTCCTTCTCACAGGTCACATGGCTATC  900

seq1  AACTGAGTAAGGTAGCAGTGGGAGAGGAAGTGACAAAACAAGGTCCTGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGTAAGGTAGCAGTGGGAGAGGAAGTGACAAAACAAGGTCCTGAG  950

seq1  GTTAGGGCT-GGTTCCTGGCTTGGGAATCTAGATTGCTGAGCTTTGCTCC  999
      ||||||||| |||||||||||||||||||||||||||||||||||||| |
seq2  GTTAGGGCTGGGTTCCTGGCTTGGGAATCTAGATTGCTGAGCTTTGCT-C  999

seq1  TGCCTCTGGAGTTCATCTAAGTA-TACCATGACCTTTAATC-ATGTCATC  1047
      || |||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  TG-CTCTGGAGTTCATCTAAGTATTACCATGACCTTTAATCAATGTCATC  1048

seq1  TGTCTTG-ATC-AGT-CTCTTGTCTT-GATAGGA-ACTGAGTACA-TCCA  1091
      ||||| | ||| ||| |||||  ||| |||| || |||||||||| ||||
seq2  TGTCTGGAATCAAGTCCTCTTTGCTTGGATAAGAGACTGAGTACATTCCA  1098

seq1  -CATGGG-CCCCACCTTATGACAAT-CTCGTGAAAATGGGTAAG--ACAG  1136
       |||||| ||||||||||||||||| |||||| |||||||  ||  ||||
seq2  CCATGGGCCCCCACCTTATGACAATCCTCGTGTAAATGGGGTAGAAACAG  1148

seq1  TCCATCTAAGGTCATCTTAAGAATGGTGTCAGTTCC-TGAG-AAGCA-GG  1183
      ||||||||  |||||||  || |||||||||||||| |||| ||||| ||
seq2  TCCATCTA--GTCATCT--AG-ATGGTGTCAGTTCCTTGAGAAAGCATGG  1193

seq1  AGACA  1188
      |||||
seq2  AGACA  1198


| Home | SequenceCutter | Blast | Download |