BAC Information

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BAC

Clone NameB6Ng01-218F01
Chromosome14 (Build37)
Map Location 38,743,573 - 38,834,472
singlet/doubletdoublet
Overlap genenone
Upstream geneGcap14, LOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm, LOC382871, LOC382872
Downstream geneNrg3, LOC100041521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218F01.bB6Ng01-218F01.g
ACCGA034477GA034478
length1,055689
definitionB6Ng01-218F01.b B6Ng01-218F01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,743,573 - 38,744,426)(38,833,785 - 38,834,472)
sequence
gaattcatgtcactggctttcccattttaatggccataatttggcagcac
taaagatagagttaggtaaccctcttaggtgtttgacttcagaatatttt
cttcaacccgtaagtaatttctgtttccagtaggagtcactctcattcct
tggtagttgattggtcagttcatgacacaaagaaacaaacagaataaaac
aaaaaaatttttaaaaatccttatatcctacaacagtggacttttgcctt
ggttggcaggttttctgtgcatgctatgatatttcttcaatattcagctg
gaaatctctttcatgctcttcctgctttttcaaaatatggtcagagtctt
catagttttcaaacgtactgtagggctgattggaggatgagaccaaatat
atttaaagcttgcaagcctcactgttcttgcagatactcatttgtttttc
ttttttcttttcccttcttattgaaaatagtttcattttttatacaatat
atccttattagagtcacttttccctctagtcctcccagtttttaacctac
cttctcctgccatacgaaccatgctctgccagcctctcataggaaagaat
aggtttctaagagataacaaactaaaatataataaaataaaacaaaaact
atcatactggagttggacaagacaaacaaacataagggaaagagcaataa
aggaaacaggagaatcagagaatggcttgttcacacattcagatgtctca
taaaaatactaaactgaaagctaatacatatatatatatgtatgtatata
tacatatacatatgtatatatatatacatatatatatatacacacacacc
ttctttagagggtcttgttcttctggcattctctatgccatctggctctt
tcatcccatcctcctctgcttttatagaatttcctgagttctgaggggag
ggattgggtagaggcatcccatttactgttggatcatgaaggcagtctgt
gttctggtcagcaaggaggcccagtacaaaatctacagaccaaaccgtaa
gctag
gaattcttcagtagttctggatataaatgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtctgtgtgtctgtgtgtctgtgtgtctgtgtgtctgtgtgt
gtgtgagagagagagagagagaaaatgaaagtgccctggaggccgatgat
gtaggaaaacactctcctactacagttgttccagtcccttttgaaagcat
gaacgtagaaaatgtagtgagtgtggtagagcctcacacattcaggtgcc
tttccagcacacacaagctctccccctggtgggaaacagaatacatgtgg
gaggcactgtgtttattcaatggatttaggaaattatttaacaatgctct
ggtatataattttcatctacaaaactgttctttattaaatgagacaataa
aaaggtttaataatgtgatacatgtggtttatggtcagatataaaaaata
tgtcaaaacatctaatgaattattactagacacaggtgacaggaaatgaa
gatgaagcaggatagtaggacagaaaactttggagtgggagggcctgaga
aggaaaaagaagtcctcatcctcttgaatttgctgtgagaaaagcaagaa
acctgttgaaaactaatcaccacttaaggcctttctgctaatatcaccag
aagccccatttacaggggagctgacttacactaaatccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_38743573_38744426
seq2: B6Ng01-218F01.b_44_897

seq1  GAATTCATGTCACTGGCTTTCCCATTTTAATGGCCATAATTTGGCAGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTCACTGGCTTTCCCATTTTAATGGCCATAATTTGGCAGCAC  50

seq1  TAAAGATAGAGTTAGGTAACCCTCTTAGGTGTTTGACTTCAGAATATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATAGAGTTAGGTAACCCTCTTAGGTGTTTGACTTCAGAATATTTT  100

seq1  CTTCAACCCGTAAGTAATTTCTGTTTCCAGTAGGAGTCACTCTCATTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACCCGTAAGTAATTTCTGTTTCCAGTAGGAGTCACTCTCATTCCT  150

seq1  TGGTAGTTGATTGGTCAGTTCATGACACAAAGAAACAAACAGAATAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTTGATTGGTCAGTTCATGACACAAAGAAACAAACAGAATAAAAC  200

seq1  AAAAAAATTTTTAAAAATCCTTATATCCTACAACAGTGGACTTTTGCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATTTTTAAAAATCCTTATATCCTACAACAGTGGACTTTTGCCTT  250

seq1  GGTTGGCAGGTTTTCTGTGCATGCTATGATATTTCTTCAATATTCAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCAGGTTTTCTGTGCATGCTATGATATTTCTTCAATATTCAGCTG  300

seq1  GAAATCTCTTTCATGCTCTTCCTGCTTTTTCAAAATATGGTCAGAGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTCTTTCATGCTCTTCCTGCTTTTTCAAAATATGGTCAGAGTCTT  350

seq1  CATAGTTTTCAAACGTACTGTAGGGCTGATTGGAGGATGAGACCAAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTTTCAAACGTACTGTAGGGCTGATTGGAGGATGAGACCAAATAT  400

seq1  ATTTAAAGCTTGCAAGCCTCACTGTTCTTGCAGATACTCATTTGTTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAGCTTGCAAGCCTCACTGTTCTTGCAGATACTCATTTGTTTTTC  450

seq1  TTTTTTCTTTTCCCTTCTTATTGAAAATAGTTTCATTTTTTATACAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTTTCCCTTCTTATTGAAAATAGTTTCATTTTTTATACAATAT  500

seq1  ATCCTTATTAGAGTCACTTTTCCCTCTAGTCCTCCCAGTTTTTAACCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTATTAGAGTCACTTTTCCCTCTAGTCCTCCCAGTTTTTAACCTAC  550

seq1  CTTCTCCTGCCATACGAACCATGCTCTGCCAGCCTCTCATAGGAAAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCTGCCATACGAACCATGCTCTGCCAGCCTCTCATAGGAAAGAAT  600

seq1  AGGTTTCTAAGAGATAACAAACTAAAATATAATAAAATAAAACAAAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCTAAGAGATAACAAACTAAAATATAATAAAATAAAACAAAAACT  650

seq1  ATCATACTGGAGTTGGACAAGACAAACAAACATAAGGGAAAGAGCAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATACTGGAGTTGGACAAGACAAACAAACATAAGGGAAAGAGCAATAA  700

seq1  AGGAAACAGGAGAATCAGAGAATGGCTTGTTCACACATTCAGATGTCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACAGGAGAATCAGAGAATGGCTTGTTCACACATTCAGATGTCTCA  750

seq1  TAAAAATACTAAACTGAAAGCTAATACATATATATATATGTATGTATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATACTAAACTGAAAGCTAATACATATATATATATGTATGTATATA  800

seq1  TACATATACATATGTATATATATATACATATATATATATACACACACACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATACATATGTATATATATATACATATATATATATACACACACACC  850

seq1  TTCT  854
      ||||
seq2  TTCT  854

seq1: chr14_38833785_38834472
seq2: B6Ng01-218F01.g_66_754 (reverse)

seq1  GGGATTTAGTGTATGTCAGCT-CCCTGTAAATGGGGCTTCTGGTGATATT  49
      ||||||||||||| ||||||| ||||||||||||||||||||||||||||
seq2  GGGATTTAGTGTAAGTCAGCTCCCCTGTAAATGGGGCTTCTGGTGATATT  50

seq1  AGCAGAAAGGCCTTAAGTGGTGATTAG-TTTCAACAGGTTTCTTGCTTTT  98
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGCAGAAAGGCCTTAAGTGGTGATTAGTTTTCAACAGGTTTCTTGCTTTT  100

seq1  CTCACAGCAAATTTCAAGAGGATGAGGACTTCTTTTTCCTTCTCAGGCCC  148
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGCAAA-TTCAAGAGGATGAGGACTTCTTTTTCCTTCTCAGGCCC  149

seq1  TCCCACTCCAAAGTTTTCTGTCCTACTATCCTGCTTCATCTTCATTTCCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTCCAAAGTTTTCTGTCCTACTATCCTGCTTCATCTTCATTTCCT  199

seq1  GTCACCTGTGTCTAGTAATAATTCATTAGATGTTTTGACATATTTTTTAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTGTGTCTAGTAATAATTCATTAGATGTTTTGACATATTTTTTAT  249

seq1  ATCTGACCATAAACCACATGTATCACATTATTAAACCTTTTTATTGTCTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACCATAAACCACATGTATCACATTATTAAACCTTTTTATTGTCTC  299

seq1  ATTTAATAAAGAACAGTTTTGTAGATGAAAATTATATACCAGAGCATTGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATAAAGAACAGTTTTGTAGATGAAAATTATATACCAGAGCATTGT  349

seq1  TAAATAATTTCCTAAATCCATTGAATAAACACAGTGCCTCCCACATGTAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATTTCCTAAATCCATTGAATAAACACAGTGCCTCCCACATGTAT  399

seq1  TCTGTTTCCCACCAGGGGGAGAGCTTGTGTGTGCTGGAAAGGCACCTGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCCCACCAGGGGGAGAGCTTGTGTGTGCTGGAAAGGCACCTGAA  449

seq1  TGTGTGAGGCTCTACCACACTCACTACATTTTCTACGTTCATGCTTTCAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGGCTCTACCACACTCACTACATTTTCTACGTTCATGCTTTCAA  499

seq1  AAGGGACTGGAACAACTGTAGTAGGAGAGTGTTTTCCTACATCATCGGCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACTGGAACAACTGTAGTAGGAGAGTGTTTTCCTACATCATCGGCC  549

seq1  TCCAGGGCACTTTCATTTTCTCTCTCTCTCTCTCTCACACACACACAGAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGCACTTTCATTTTCTCTCTCTCTCTCTCTCACACACACACAGAC  599

seq1  ACACAGACACACAGACACACAGACACACAGACACACACACACACACACAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACACACAGACACACAGACACACAGACACACACACACACACACAC  649

seq1  ACACACACACACATTTATATCCAGAACTACTGAAGAATTC  688
      ||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACATTTATATCCAGAACTACTGAAGAATTC  689